Wall clock time and date at job start Tue Mar 31 2020 05:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47085 * 2 1 4 4 C 1.52995 * 109.47276 * 119.99831 * 2 1 3 5 5 C 1.50696 * 109.47438 * 64.99659 * 4 2 1 6 6 C 1.38342 * 119.87259 * 90.00001 * 5 4 2 7 7 C 1.37998 * 120.12919 * 180.02562 * 6 5 4 8 8 C 1.39397 * 119.87000 * 0.02562 * 7 6 5 9 9 C 1.48297 * 120.12254 * 180.02562 * 8 7 6 10 10 C 1.40036 * 119.98653 * 4.97629 * 9 8 7 11 11 N 1.32174 * 120.29308 * 180.02562 * 10 9 8 12 12 C 1.31888 * 120.28623 * 359.73158 * 11 10 9 13 13 C 1.40822 * 119.96375 * 0.52151 * 12 11 10 14 14 C 1.41328 * 120.14458 * 179.75469 * 13 12 11 15 15 H 1.07998 * 120.00015 * 359.49660 * 14 13 12 16 16 C 1.40048 * 119.99874 * 179.50299 * 14 13 12 17 17 N 1.30724 * 120.00317 * 177.98335 * 16 14 13 18 18 Si 1.86808 * 120.00088 * 357.97765 * 16 14 13 19 19 H 1.48498 * 109.47339 * 180.02562 * 18 16 14 20 20 H 1.48499 * 109.46832 * 300.00606 * 18 16 14 21 21 H 1.48494 * 109.46896 * 60.00276 * 18 16 14 22 22 N 1.32517 * 119.98546 * 184.99694 * 9 8 7 23 23 C 1.39387 * 119.74872 * 0.27519 * 8 7 6 24 24 C 1.38004 * 119.87237 * 359.42196 * 23 8 7 25 25 H 1.08992 * 109.47131 * 300.00528 * 1 2 3 26 26 H 1.09002 * 109.47071 * 60.00251 * 1 2 3 27 27 H 1.08996 * 109.47151 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47125 * 240.00180 * 2 1 3 29 29 H 1.08998 * 109.47193 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46961 * 299.99816 * 3 2 1 31 31 H 1.08992 * 109.47568 * 59.99739 * 3 2 1 32 32 H 1.09012 * 109.47116 * 305.00275 * 4 2 1 33 33 H 1.08998 * 109.47799 * 185.00117 * 4 2 1 34 34 H 1.08004 * 119.93225 * 359.97438 * 6 5 4 35 35 H 1.07999 * 120.06616 * 180.02562 * 7 6 5 36 36 H 1.07993 * 119.85326 * 0.02562 * 10 9 8 37 37 H 1.07999 * 120.01818 * 180.28116 * 12 11 10 38 38 H 0.97005 * 120.00100 * 354.82334 * 17 16 14 39 39 H 1.08008 * 120.06437 * 179.72632 * 23 8 7 40 40 H 1.08004 * 119.93817 * 180.29832 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 -2.1732 1.1890 6 6 2.4840 -3.0950 0.5941 7 6 2.1240 -4.4259 0.5356 8 6 0.9082 -4.8407 1.0770 9 6 0.5160 -6.2696 1.0177 10 6 1.4108 -7.2206 0.5118 11 7 1.0673 -8.4957 0.4557 12 6 -0.1193 -8.8842 0.8806 13 6 -1.0301 -7.9368 1.3865 14 6 -2.3045 -8.3482 1.8381 15 1 -2.5848 -9.3900 1.7880 16 6 -3.2040 -7.4049 2.3503 17 7 -4.3972 -7.7791 2.7313 18 14 -2.6988 -5.6118 2.4893 19 1 -3.8217 -4.8238 3.0578 20 1 -1.5150 -5.4987 3.3786 21 1 -2.3579 -5.0879 1.1423 22 7 -0.6813 -6.6459 1.4431 23 6 0.0603 -3.9064 1.6695 24 6 0.4337 -2.5791 1.7279 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6053 -0.2616 2.1370 33 1 3.1263 -0.6443 1.2952 34 1 3.4252 -2.7723 0.1739 35 1 2.7828 -5.1448 0.0713 36 1 2.3858 -6.9108 0.1660 37 1 -0.3937 -9.9279 0.8370 38 1 -4.6867 -8.6942 2.5903 39 1 -0.8848 -4.2215 2.0866 40 1 -0.2203 -1.8551 2.1911 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241323867.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:53 Heat of formation + Delta-G solvation = 27.582158 kcal Electronic energy + Delta-G solvation = -21237.847930 eV Core-core repulsion = 18208.685692 eV Total energy + Delta-G solvation = -3029.162238 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.85189 -38.87742 -36.26407 -34.32150 -33.09343 -31.95023 -30.74029 -29.79769 -27.25651 -26.63081 -25.81047 -23.39412 -22.57761 -21.58141 -20.52491 -19.96016 -18.59325 -16.87900 -16.15689 -15.72119 -15.44264 -15.02365 -14.39487 -14.35057 -14.17492 -13.67240 -13.57435 -13.31280 -12.99100 -12.64898 -12.42396 -12.29634 -12.28279 -11.97007 -11.62952 -11.44146 -11.19969 -11.16180 -10.99669 -10.80437 -10.63493 -10.50196 -9.92335 -9.80005 -9.52399 -9.18119 -8.78596 -8.63415 -7.83951 -7.63661 -7.30901 -5.03643 1.14859 1.69866 2.39026 2.60741 3.39440 3.51630 3.81908 4.03772 4.20490 4.53702 4.69737 4.74789 4.86268 4.90005 5.11876 5.22165 5.26733 5.36167 5.41168 5.51330 5.54187 5.60359 5.70704 5.74110 5.77692 5.78891 5.86656 5.97611 6.04093 6.05925 6.21483 6.22521 6.25501 6.37248 6.50548 6.64163 6.75771 6.82415 7.00292 7.17858 7.21795 7.26356 7.78442 7.95599 8.31420 8.74208 9.22011 9.76544 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.020523 B = 0.005003 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.007738 B = 5595.766552 C = 6741.583104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.091 4.091 3 C -0.147 4.147 4 C -0.074 4.074 5 C -0.082 4.082 6 C -0.124 4.124 7 C -0.098 4.098 8 C -0.033 4.033 9 C 0.169 3.831 10 C -0.105 4.105 11 N -0.419 5.419 12 C -0.042 4.042 13 C 0.202 3.798 14 C -0.450 4.450 15 H 0.090 0.910 16 C 0.041 3.959 17 N -0.789 5.789 18 Si 1.145 2.855 19 H -0.326 1.326 20 H -0.284 1.284 21 H -0.278 1.278 22 N -0.540 5.540 23 C -0.094 4.094 24 C -0.123 4.123 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.120 0.880 35 H 0.127 0.873 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.287 0.713 39 H 0.131 0.869 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.221 14.341 -2.940 17.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.110 4.110 3 C -0.204 4.204 4 C -0.111 4.111 5 C -0.082 4.082 6 C -0.142 4.142 7 C -0.117 4.117 8 C -0.034 4.034 9 C 0.026 3.974 10 C -0.261 4.261 11 N -0.130 5.130 12 C -0.213 4.213 13 C 0.077 3.923 14 C -0.482 4.482 15 H 0.108 0.892 16 C -0.182 4.182 17 N -0.410 5.410 18 Si 0.981 3.019 19 H -0.259 1.259 20 H -0.212 1.212 21 H -0.206 1.206 22 N -0.263 5.263 23 C -0.112 4.112 24 C -0.141 4.141 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.138 0.862 35 H 0.145 0.855 36 H 0.155 0.845 37 H 0.158 0.842 38 H 0.099 0.901 39 H 0.148 0.852 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.642 15.646 -2.413 18.036 hybrid contribution 0.360 -1.936 -0.552 2.045 sum 9.002 13.709 -2.965 16.666 Atomic orbital electron populations 1.21942 0.95068 1.02641 1.01380 1.21083 0.96276 0.95571 0.98059 1.21851 1.00764 0.96078 1.01703 1.20665 1.00846 0.91339 0.98293 1.19860 0.94719 0.95216 0.98440 1.20837 0.99652 0.92688 1.00997 1.21199 0.95648 0.95878 0.98957 1.18662 0.94457 0.91361 0.98960 1.20312 0.90904 0.92546 0.93613 1.22464 1.01035 0.89235 1.13380 1.67699 1.17417 1.17284 1.10571 1.23152 0.91497 0.99759 1.06927 1.19407 0.94652 0.87596 0.90648 1.20836 0.96640 0.97610 1.33160 0.89160 1.27878 0.91974 1.09343 0.89052 1.70635 1.18063 1.22383 1.29908 0.82253 0.71425 0.70099 0.78123 1.25884 1.21243 1.20625 1.67132 1.16731 1.17304 1.25100 1.21756 0.99834 0.92471 0.97137 1.20985 0.96444 0.95615 1.01025 0.92769 0.93001 0.91749 0.91094 0.92817 0.92765 0.92723 0.91101 0.91181 0.86192 0.85494 0.84490 0.84190 0.90129 0.85200 0.86091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.76 37.16 0.33 -1.22 16 2 C -0.09 -0.86 2.91 -90.62 -0.26 -1.12 16 3 C -0.15 -1.12 9.19 37.16 0.34 -0.78 16 4 C -0.07 -0.74 4.83 -27.89 -0.13 -0.88 16 5 C -0.08 -1.08 4.72 -104.55 -0.49 -1.57 16 6 C -0.12 -1.65 9.68 -39.63 -0.38 -2.04 16 7 C -0.10 -1.55 9.42 -39.24 -0.37 -1.92 16 8 C -0.03 -0.65 5.87 -104.90 -0.62 -1.26 16 9 C 0.17 3.89 6.73 -82.76 -0.56 3.33 16 10 C -0.10 -2.31 10.61 -16.73 -0.18 -2.48 16 11 N -0.42 -9.86 10.47 -12.06 -0.13 -9.99 16 12 C -0.04 -1.00 10.98 -16.55 -0.18 -1.19 16 13 C 0.20 5.23 6.42 -84.84 -0.54 4.68 16 14 C -0.45 -11.81 9.60 -37.73 -0.36 -12.18 16 15 H 0.09 2.30 8.06 -52.49 -0.42 1.88 16 16 C 0.04 1.07 5.52 -17.34 -0.10 0.97 16 17 N -0.79 -20.71 13.65 55.55 0.76 -19.95 16 18 Si 1.15 27.67 22.22 -169.99 -3.78 23.89 16 19 H -0.33 -7.69 7.11 56.52 0.40 -7.29 16 20 H -0.28 -6.85 6.65 56.52 0.38 -6.47 16 21 H -0.28 -6.70 6.48 56.52 0.37 -6.33 16 22 N -0.54 -13.74 4.31 -7.50 -0.03 -13.78 16 23 C -0.09 -1.79 9.47 -39.24 -0.37 -2.16 16 24 C -0.12 -1.87 7.93 -39.63 -0.31 -2.18 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.77 6.26 -51.93 -0.33 0.44 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.67 8.08 -51.92 -0.42 0.25 16 33 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 34 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 35 H 0.13 1.79 6.22 -52.49 -0.33 1.46 16 36 H 0.14 2.55 6.22 -52.49 -0.33 2.22 16 37 H 0.14 3.05 8.06 -52.49 -0.42 2.63 16 38 H 0.29 7.12 8.72 -40.82 -0.36 6.76 16 39 H 0.13 2.73 2.59 -52.48 -0.14 2.59 16 40 H 0.12 1.57 8.03 -52.48 -0.42 1.15 16 LS Contribution 320.77 15.07 4.83 4.83 Total: -1.00 -28.39 320.77 -7.94 -36.32 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -5.39 Total: 0.65 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: -4.20 Total: -21.99 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: 0.60 Total: -43.71 kcal Atomic # 14 Polarization: 27.67 SS G_CDS: -3.78 Total: 23.89 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.39 -7.94 -36.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241323867.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.904 kcal (2) G-P(sol) polarization free energy of solvation -28.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds