Wall clock time and date at job start Tue Mar 31 2020 05:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53008 * 109.47362 * 2 1 4 4 C 1.53001 * 109.47220 * 119.99960 * 2 1 3 5 5 C 1.50706 * 109.47324 * 175.00035 * 4 2 1 6 6 C 1.38405 * 119.84511 * 89.99798 * 5 4 2 7 7 C 1.37913 * 120.15102 * 179.97438 * 6 5 4 8 8 C 1.39696 * 119.84439 * 0.02562 * 7 6 5 9 9 C 1.47796 * 120.15240 * 179.97438 * 8 7 6 10 10 N 1.32866 * 120.24958 * 316.70943 * 9 8 7 11 11 C 1.32000 * 120.07928 * 180.30329 * 10 9 8 12 12 C 1.39198 * 120.58697 * 359.69933 * 11 10 9 13 13 N 1.31605 * 120.50714 * 0.02562 * 12 11 10 14 14 C 1.33972 * 119.89656 * 359.97438 * 13 12 11 15 15 C 1.40800 * 120.29002 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00258 * 157.78544 * 15 14 13 17 17 C 1.40178 * 119.99613 * 337.79009 * 15 14 13 18 18 N 1.30685 * 119.99970 * 339.62732 * 17 15 14 19 19 Si 1.86800 * 119.99811 * 159.34893 * 17 15 14 20 20 H 1.48503 * 109.46569 * 180.27641 * 19 17 15 21 21 H 1.48500 * 109.47174 * 300.27356 * 19 17 15 22 22 H 1.48497 * 109.46923 * 60.27529 * 19 17 15 23 23 C 1.39693 * 119.69529 * 0.25729 * 8 7 6 24 24 C 1.37916 * 119.84040 * 359.46577 * 23 8 7 25 25 H 1.09009 * 109.46819 * 300.00246 * 1 2 3 26 26 H 1.09001 * 109.47302 * 59.99374 * 1 2 3 27 27 H 1.08999 * 109.47480 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47540 * 240.00065 * 2 1 3 29 29 H 1.08996 * 109.46974 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46785 * 300.00149 * 3 2 1 31 31 H 1.08997 * 109.46946 * 60.00062 * 3 2 1 32 32 H 1.08997 * 109.46875 * 55.00080 * 4 2 1 33 33 H 1.08999 * 109.47107 * 294.99821 * 4 2 1 34 34 H 1.07993 * 119.92475 * 359.97438 * 6 5 4 35 35 H 1.07999 * 120.07701 * 180.02562 * 7 6 5 36 36 H 1.08005 * 119.70788 * 179.68308 * 11 10 9 37 37 H 1.07998 * 119.74777 * 180.02562 * 12 11 10 38 38 H 0.96998 * 119.99606 * 353.65780 * 18 17 15 39 39 H 1.07998 * 120.07594 * 179.74458 * 23 8 7 40 40 H 1.08005 * 119.91720 * 180.25429 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.8294 1.1889 6 6 4.3270 0.1743 1.7291 7 6 5.7021 0.0816 1.6778 8 6 6.3021 -1.0285 1.0785 9 6 7.7750 -1.1346 1.0193 10 7 8.5099 -0.0763 0.6948 11 6 9.8248 -0.1763 0.6371 12 6 10.4563 -1.3841 0.9201 13 7 9.7513 -2.4456 1.2492 14 6 8.4155 -2.3663 1.3138 15 6 7.6532 -3.4967 1.6656 16 1 6.6568 -3.3735 2.0634 17 6 8.1878 -4.7818 1.4995 18 7 9.1863 -4.9731 0.6784 19 14 7.4779 -6.2196 2.4577 20 1 8.2179 -7.4594 2.1104 21 1 7.6081 -5.9568 3.9135 22 1 6.0436 -6.3856 2.1110 23 6 5.5035 -2.0349 0.5301 24 6 4.1296 -1.9319 0.5935 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6053 -1.7198 1.2951 33 1 1.7516 -0.1583 2.1370 34 1 3.8618 1.0321 2.1917 35 1 6.3135 0.8653 2.1000 36 1 10.4160 0.6865 0.3677 37 1 11.5330 -1.4507 0.8692 38 1 9.4976 -4.2467 0.1159 39 1 5.9609 -2.8938 0.0616 40 1 3.5110 -2.7113 0.1735 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241324348.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:57 Heat of formation + Delta-G solvation = 26.882763 kcal Electronic energy + Delta-G solvation = -21312.654479 eV Core-core repulsion = 18283.461913 eV Total energy + Delta-G solvation = -3029.192566 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.54780 -38.57214 -36.01154 -34.47186 -32.64313 -31.38133 -30.38895 -29.35023 -27.14968 -26.39691 -25.74633 -22.85007 -22.22543 -21.64323 -20.52796 -19.73950 -18.33298 -16.35658 -16.13824 -15.33239 -14.89997 -14.76947 -14.23188 -14.14248 -14.12707 -13.68835 -13.31941 -13.03041 -12.85056 -12.56457 -12.27830 -12.12986 -12.00446 -11.72197 -11.59678 -11.29550 -11.15018 -10.79627 -10.66691 -10.50376 -10.39623 -10.34644 -10.07580 -9.96109 -9.80503 -9.25146 -8.40960 -8.27217 -7.84680 -7.55340 -7.12048 -4.81367 1.68084 2.07488 2.45708 2.80297 3.08216 3.17185 3.28628 3.88802 4.35492 4.51392 4.88826 4.92763 5.01193 5.31412 5.35873 5.41425 5.47976 5.58799 5.60081 5.70471 5.71494 5.77686 5.83050 5.91951 5.98034 6.04839 6.10601 6.12154 6.27915 6.29102 6.35538 6.41646 6.49805 6.65444 6.71505 6.88052 7.08064 7.16440 7.35987 7.46461 7.56185 7.62782 7.71240 8.31815 8.40457 8.98851 9.47276 9.89397 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.016540 B = 0.005212 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.417387 B = 5370.931331 C = 6754.908002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.150 4.150 4 C -0.070 4.070 5 C -0.101 4.101 6 C -0.122 4.122 7 C -0.108 4.108 8 C 0.020 3.980 9 C -0.021 4.021 10 N -0.408 5.408 11 C -0.122 4.122 12 C 0.100 3.900 13 N -0.519 5.519 14 C 0.209 3.791 15 C -0.455 4.455 16 H 0.096 0.904 17 C 0.035 3.965 18 N -0.744 5.744 19 Si 1.066 2.934 20 H -0.271 1.271 21 H -0.272 1.272 22 H -0.271 1.271 23 C -0.093 4.093 24 C -0.124 4.124 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.308 0.692 39 H 0.130 0.870 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.856 4.457 -0.030 12.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.207 4.207 4 C -0.107 4.107 5 C -0.101 4.101 6 C -0.140 4.140 7 C -0.127 4.127 8 C 0.019 3.981 9 C -0.168 4.168 10 N -0.119 5.119 11 C -0.282 4.282 12 C -0.070 4.070 13 N -0.238 5.238 14 C 0.085 3.915 15 C -0.485 4.485 16 H 0.114 0.886 17 C -0.193 4.193 18 N -0.365 5.365 19 Si 0.889 3.111 20 H -0.195 1.195 21 H -0.198 1.198 22 H -0.197 1.197 23 C -0.112 4.112 24 C -0.142 4.142 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.123 0.877 39 H 0.148 0.852 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.588 2.832 0.218 11.931 hybrid contribution 0.230 1.878 -0.300 1.916 sum -11.358 4.710 -0.081 12.296 Atomic orbital electron populations 1.21854 0.95563 1.01491 1.01467 1.21085 0.94889 0.96629 0.98416 1.21913 1.02200 0.95634 1.00966 1.20591 0.91845 1.00568 0.97715 1.19701 0.94728 0.95226 1.00480 1.20758 0.93348 0.98419 1.01499 1.21194 0.94060 0.97744 0.99699 1.18308 0.90621 0.93560 0.95662 1.20217 0.92192 0.92206 1.12228 1.67701 1.06755 1.30288 1.07198 1.22500 0.91131 0.98372 1.16221 1.23337 0.99730 0.90486 0.93444 1.69035 1.06498 1.29095 1.19137 1.19230 0.88809 0.92785 0.90642 1.20706 1.02526 0.91179 1.34103 0.88595 1.27186 0.94016 1.01715 0.96428 1.70210 1.15582 1.39217 1.11493 0.83612 0.76568 0.74440 0.76502 1.19520 1.19757 1.19665 1.21392 0.92712 0.98824 0.98307 1.20825 0.94552 0.97718 1.01107 0.92863 0.92925 0.92819 0.91145 0.91689 0.93279 0.93049 0.91484 0.91607 0.87094 0.86768 0.85123 0.84900 0.87715 0.85183 0.86834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.19 37.15 0.34 -0.98 16 2 C -0.09 -1.01 2.91 -90.62 -0.26 -1.27 16 3 C -0.15 -1.67 8.76 37.16 0.33 -1.34 16 4 C -0.07 -0.84 4.83 -27.88 -0.13 -0.98 16 5 C -0.10 -1.56 4.72 -104.50 -0.49 -2.05 16 6 C -0.12 -2.00 7.93 -39.64 -0.31 -2.31 16 7 C -0.11 -2.11 9.67 -39.16 -0.38 -2.49 16 8 C 0.02 0.44 5.25 -104.90 -0.55 -0.11 16 9 C -0.02 -0.52 6.42 -82.10 -0.53 -1.04 16 10 N -0.41 -10.00 10.30 -8.97 -0.09 -10.09 16 11 C -0.12 -2.76 11.22 -17.12 -0.19 -2.96 16 12 C 0.10 2.30 11.22 -17.29 -0.19 2.10 16 13 N -0.52 -13.61 8.02 -10.73 -0.09 -13.70 16 14 C 0.21 5.50 6.06 -84.56 -0.51 4.99 16 15 C -0.46 -11.48 6.95 -37.89 -0.26 -11.74 16 16 H 0.10 2.32 6.15 -52.49 -0.32 2.00 16 17 C 0.04 0.86 5.30 -17.31 -0.09 0.77 16 18 N -0.74 -19.41 13.11 55.56 0.73 -18.68 16 19 Si 1.07 20.62 29.98 -169.99 -5.10 15.53 16 20 H -0.27 -5.21 7.11 56.52 0.40 -4.80 16 21 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 22 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 23 C -0.09 -1.89 7.72 -39.16 -0.30 -2.20 16 24 C -0.12 -2.10 9.68 -39.64 -0.38 -2.49 16 25 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.84 6.26 -51.93 -0.33 0.52 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 33 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 34 H 0.11 1.55 8.03 -52.49 -0.42 1.12 16 35 H 0.11 2.23 8.06 -52.49 -0.42 1.81 16 36 H 0.13 2.52 8.06 -52.48 -0.42 2.09 16 37 H 0.13 2.56 8.06 -52.49 -0.42 2.14 16 38 H 0.31 8.38 6.60 -40.82 -0.27 8.11 16 39 H 0.13 2.79 6.76 -52.49 -0.35 2.43 16 40 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 331.62 15.07 5.00 5.00 Total: -1.00 -28.24 331.62 -9.04 -37.29 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -5.56 Total: 8.76 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: -3.94 Total: -24.11 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: 0.55 Total: -42.47 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.10 Total: 15.53 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.24 -9.04 -37.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241324348.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.168 kcal (2) G-P(sol) polarization free energy of solvation -28.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds