Wall clock time and date at job start Tue Mar 31 2020 05:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53008 * 109.47362 * 2 1 4 4 C 1.53001 * 109.47220 * 119.99960 * 2 1 3 5 5 C 1.50706 * 109.47324 * 175.00035 * 4 2 1 6 6 C 1.38405 * 119.84511 * 89.99798 * 5 4 2 7 7 C 1.37913 * 120.15102 * 179.97438 * 6 5 4 8 8 C 1.39696 * 119.84439 * 0.02562 * 7 6 5 9 9 C 1.47796 * 120.15240 * 179.97438 * 8 7 6 10 10 N 1.32866 * 120.24958 * 316.70943 * 9 8 7 11 11 C 1.32000 * 120.07928 * 180.30329 * 10 9 8 12 12 C 1.39198 * 120.58697 * 359.69933 * 11 10 9 13 13 N 1.31605 * 120.50714 * 0.02562 * 12 11 10 14 14 C 1.33972 * 119.89656 * 359.97438 * 13 12 11 15 15 C 1.40800 * 120.29002 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00258 * 157.78544 * 15 14 13 17 17 C 1.40178 * 119.99613 * 337.79009 * 15 14 13 18 18 N 1.30685 * 119.99970 * 339.62732 * 17 15 14 19 19 Si 1.86800 * 119.99811 * 159.34893 * 17 15 14 20 20 H 1.48503 * 109.46569 * 180.27641 * 19 17 15 21 21 H 1.48500 * 109.47174 * 300.27356 * 19 17 15 22 22 H 1.48497 * 109.46923 * 60.27529 * 19 17 15 23 23 C 1.39693 * 119.69529 * 0.25729 * 8 7 6 24 24 C 1.37916 * 119.84040 * 359.46577 * 23 8 7 25 25 H 1.09009 * 109.46819 * 300.00246 * 1 2 3 26 26 H 1.09001 * 109.47302 * 59.99374 * 1 2 3 27 27 H 1.08999 * 109.47480 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47540 * 240.00065 * 2 1 3 29 29 H 1.08996 * 109.46974 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46785 * 300.00149 * 3 2 1 31 31 H 1.08997 * 109.46946 * 60.00062 * 3 2 1 32 32 H 1.08997 * 109.46875 * 55.00080 * 4 2 1 33 33 H 1.08999 * 109.47107 * 294.99821 * 4 2 1 34 34 H 1.07993 * 119.92475 * 359.97438 * 6 5 4 35 35 H 1.07999 * 120.07701 * 180.02562 * 7 6 5 36 36 H 1.08005 * 119.70788 * 179.68308 * 11 10 9 37 37 H 1.07998 * 119.74777 * 180.02562 * 12 11 10 38 38 H 0.96998 * 119.99606 * 353.65780 * 18 17 15 39 39 H 1.07998 * 120.07594 * 179.74458 * 23 8 7 40 40 H 1.08005 * 119.91720 * 180.25429 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.8294 1.1889 6 6 4.3270 0.1743 1.7291 7 6 5.7021 0.0816 1.6778 8 6 6.3021 -1.0285 1.0785 9 6 7.7750 -1.1346 1.0193 10 7 8.5099 -0.0763 0.6948 11 6 9.8248 -0.1763 0.6371 12 6 10.4563 -1.3841 0.9201 13 7 9.7513 -2.4456 1.2492 14 6 8.4155 -2.3663 1.3138 15 6 7.6532 -3.4967 1.6656 16 1 6.6568 -3.3735 2.0634 17 6 8.1878 -4.7818 1.4995 18 7 9.1863 -4.9731 0.6784 19 14 7.4779 -6.2196 2.4577 20 1 8.2179 -7.4594 2.1104 21 1 7.6081 -5.9568 3.9135 22 1 6.0436 -6.3856 2.1110 23 6 5.5035 -2.0349 0.5301 24 6 4.1296 -1.9319 0.5935 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6053 -1.7198 1.2951 33 1 1.7516 -0.1583 2.1370 34 1 3.8618 1.0321 2.1917 35 1 6.3135 0.8653 2.1000 36 1 10.4160 0.6865 0.3677 37 1 11.5330 -1.4507 0.8692 38 1 9.4976 -4.2467 0.1159 39 1 5.9609 -2.8938 0.0616 40 1 3.5110 -2.7113 0.1735 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241324348.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:56 Heat of formation + Delta-G solvation = 13.023099 kcal Electronic energy + Delta-G solvation = -21313.255479 eV Core-core repulsion = 18283.461913 eV Total energy + Delta-G solvation = -3029.793566 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.28452 -40.02255 -37.08139 -36.32809 -34.33507 -33.04685 -31.83152 -30.88248 -28.11275 -27.87947 -27.22904 -24.46867 -23.97404 -23.18144 -21.91839 -20.74505 -20.18350 -18.01874 -17.86473 -16.75456 -16.44764 -16.13988 -15.72879 -15.46634 -15.24138 -15.06264 -14.97777 -14.53166 -14.23074 -14.08371 -13.77073 -13.25237 -13.15263 -12.95080 -12.87737 -12.68275 -12.33214 -12.01967 -11.98135 -11.90043 -11.82737 -11.70162 -11.56089 -11.44097 -11.41746 -11.04166 -10.13295 -9.80657 -9.65820 -9.24720 -8.93134 -6.72202 0.06621 0.62413 0.68131 1.01841 1.50282 1.62556 1.79581 2.28465 2.65418 2.93465 3.51920 3.65086 3.91980 3.98508 3.99573 4.13846 4.18389 4.22951 4.28915 4.45136 4.50213 4.64746 4.65953 4.79468 4.84770 4.88048 4.92087 4.96748 5.03012 5.13219 5.14251 5.22732 5.29479 5.39453 5.49307 5.51087 5.54347 5.57302 5.67847 5.77861 5.81391 5.91970 6.21185 6.44590 6.54129 7.11751 7.59346 7.94428 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.016540 B = 0.005212 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.417387 B = 5370.931331 C = 6754.908002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 C -0.151 4.151 4 C -0.068 4.068 5 C -0.084 4.084 6 C -0.113 4.113 7 C -0.117 4.117 8 C -0.018 4.018 9 C -0.033 4.033 10 N -0.427 5.427 11 C -0.121 4.121 12 C 0.088 3.912 13 N -0.549 5.549 14 C 0.182 3.818 15 C -0.473 4.473 16 H 0.098 0.902 17 C 0.003 3.997 18 N -0.771 5.771 19 Si 1.115 2.885 20 H -0.269 1.269 21 H -0.266 1.266 22 H -0.246 1.246 23 C -0.106 4.106 24 C -0.122 4.122 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.142 0.858 35 H 0.106 0.894 36 H 0.167 0.833 37 H 0.168 0.832 38 H 0.289 0.711 39 H 0.107 0.893 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.723 4.942 0.669 15.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 C -0.208 4.208 4 C -0.105 4.105 5 C -0.084 4.084 6 C -0.131 4.131 7 C -0.136 4.136 8 C -0.019 4.019 9 C -0.180 4.180 10 N -0.139 5.139 11 C -0.280 4.280 12 C -0.081 4.081 13 N -0.269 5.269 14 C 0.058 3.942 15 C -0.504 4.504 16 H 0.116 0.884 17 C -0.219 4.219 18 N -0.392 5.392 19 Si 0.931 3.069 20 H -0.194 1.194 21 H -0.191 1.191 22 H -0.169 1.169 23 C -0.125 4.125 24 C -0.140 4.140 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.159 0.841 35 H 0.124 0.876 36 H 0.184 0.816 37 H 0.185 0.815 38 H 0.103 0.897 39 H 0.125 0.875 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.455 3.353 0.904 14.866 hybrid contribution 1.084 1.926 -0.569 2.282 sum -13.371 5.279 0.334 14.379 Atomic orbital electron populations 1.21808 0.93637 1.02228 1.02254 1.21063 0.96435 0.96097 0.97264 1.21920 1.00705 0.96118 1.02061 1.20686 0.88769 1.02021 0.98997 1.20131 0.96914 0.93650 0.97726 1.21056 0.91956 0.99462 1.00646 1.21220 0.95587 0.96838 0.99998 1.18395 0.89450 0.95574 0.98530 1.20699 0.93979 0.91913 1.11384 1.67795 1.07641 1.30453 1.08024 1.23136 0.91020 0.99440 1.14451 1.23912 1.01328 0.90005 0.92821 1.69010 1.06931 1.30614 1.20312 1.19643 0.89336 0.93971 0.91244 1.20836 1.02833 0.91625 1.35075 0.88411 1.28635 0.93220 1.04095 0.95947 1.70325 1.17496 1.38341 1.13025 0.83057 0.77261 0.71245 0.75367 1.19373 1.19056 1.16942 1.21272 0.94177 0.97936 0.99161 1.21108 0.93245 0.98956 1.00656 0.91926 0.92361 0.92149 0.92294 0.93915 0.92556 0.91745 0.90035 0.89900 0.84057 0.87565 0.81612 0.81481 0.89711 0.87496 0.84264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.19 71.98 0.66 -1.35 16 2 C -0.09 -1.68 2.91 -10.79 -0.03 -1.71 16 3 C -0.15 -2.91 8.76 71.98 0.63 -2.28 16 4 C -0.07 -1.36 4.83 29.85 0.14 -1.22 16 5 C -0.08 -2.38 4.72 -19.78 -0.09 -2.47 16 6 C -0.11 -3.50 7.93 22.23 0.18 -3.32 16 7 C -0.12 -4.61 9.67 22.55 0.22 -4.39 16 8 C -0.02 -0.82 5.25 -20.05 -0.11 -0.93 16 9 C -0.03 -1.70 6.42 42.43 0.27 -1.43 16 10 N -0.43 -21.44 10.30 -182.29 -1.88 -23.32 16 11 C -0.12 -5.48 11.22 84.90 0.95 -4.53 16 12 C 0.09 4.09 11.22 84.96 0.95 5.04 16 13 N -0.55 -29.87 8.02 -187.85 -1.51 -31.37 16 14 C 0.18 10.01 6.06 40.36 0.24 10.25 16 15 C -0.47 -24.81 6.95 23.37 0.16 -24.65 16 16 H 0.10 4.92 6.15 -2.91 -0.02 4.90 16 17 C 0.00 0.17 5.30 85.33 0.45 0.63 16 18 N -0.77 -41.76 13.11 21.86 0.29 -41.48 16 19 Si 1.12 41.55 29.98 68.60 2.06 43.61 16 20 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 21 H -0.27 -9.55 7.11 99.48 0.71 -8.85 16 22 H -0.25 -8.08 7.11 99.48 0.71 -7.37 16 23 C -0.11 -4.41 7.72 22.55 0.17 -4.24 16 24 C -0.12 -3.97 9.68 22.23 0.22 -3.76 16 25 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.04 1.01 6.26 -2.39 -0.01 1.00 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.47 8.08 -2.39 -0.02 1.45 16 33 H 0.08 1.46 8.08 -2.39 -0.02 1.44 16 34 H 0.14 3.47 8.03 -2.91 -0.02 3.45 16 35 H 0.11 4.24 8.06 -2.91 -0.02 4.21 16 36 H 0.17 6.16 8.06 -2.91 -0.02 6.14 16 37 H 0.17 6.37 8.06 -2.91 -0.02 6.35 16 38 H 0.29 16.62 6.60 -92.71 -0.61 16.00 16 39 H 0.11 4.85 6.76 -2.91 -0.02 4.83 16 40 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -64.44 331.62 5.17 -59.27 By element: Atomic # 1 Polarization: 32.47 SS G_CDS: 1.18 Total: 33.65 kcal Atomic # 6 Polarization: -45.38 SS G_CDS: 5.03 Total: -40.36 kcal Atomic # 7 Polarization: -93.07 SS G_CDS: -3.10 Total: -96.17 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.06 Total: 43.61 kcal Total: -64.44 5.17 -59.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241324348.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.291 kcal (2) G-P(sol) polarization free energy of solvation -64.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds