Wall clock time and date at job start Tue Mar 31 2020 05:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46885 * 2 1 4 4 C 1.52993 * 109.47356 * 120.00354 * 2 1 3 5 5 C 1.50696 * 109.47367 * 174.99861 * 4 2 1 6 6 C 1.38414 * 119.84748 * 89.99510 * 5 4 2 7 7 C 1.37916 * 120.14806 * 180.02562 * 6 5 4 8 8 C 1.39660 * 119.84974 * 359.97438 * 7 6 5 9 9 C 1.47936 * 120.14706 * 179.97438 * 8 7 6 10 10 C 1.40423 * 120.79230 * 359.72253 * 9 8 7 11 11 N 1.31587 * 119.09558 * 179.73430 * 10 9 8 12 12 C 1.33647 * 120.82808 * 0.57487 * 11 10 9 13 13 C 1.41095 * 119.13589 * 179.70157 * 12 11 10 14 14 H 1.08000 * 119.99662 * 179.97438 * 13 12 11 15 15 C 1.40142 * 119.99832 * 359.97438 * 13 12 11 16 16 N 1.30655 * 120.00101 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99876 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47280 * 59.99762 * 17 15 13 19 19 H 1.48502 * 109.47081 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46932 * 299.99604 * 17 15 13 21 21 N 1.33643 * 121.73051 * 359.67449 * 12 11 10 22 22 C 1.31585 * 120.83207 * 0.02562 * 21 12 11 23 23 C 1.39652 * 119.70279 * 0.25288 * 8 7 6 24 24 C 1.37920 * 119.84941 * 359.53153 * 23 8 7 25 25 H 1.09000 * 109.47059 * 299.99297 * 1 2 3 26 26 H 1.08994 * 109.47333 * 59.99539 * 1 2 3 27 27 H 1.09003 * 109.47115 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47059 * 240.00703 * 2 1 3 29 29 H 1.08997 * 109.47309 * 300.00831 * 3 2 1 30 30 H 1.09000 * 109.46698 * 60.00482 * 3 2 1 31 31 H 1.09001 * 109.46895 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.47342 * 54.99803 * 4 2 1 33 33 H 1.08999 * 109.47237 * 295.00180 * 4 2 1 34 34 H 1.08001 * 119.92696 * 0.02562 * 6 5 4 35 35 H 1.07999 * 120.07993 * 179.97438 * 7 6 5 36 36 H 1.08000 * 120.45470 * 0.02562 * 10 9 8 37 37 H 0.96999 * 120.00101 * 179.97438 * 16 15 13 38 38 H 1.08006 * 120.45038 * 180.02562 * 22 21 12 39 39 H 1.07995 * 120.07566 * 179.72353 * 23 8 7 40 40 H 1.07996 * 119.92723 * 180.20951 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5419 -0.8295 1.1887 6 6 4.3271 0.1743 1.7289 7 6 5.7022 0.0819 1.6766 8 6 6.3021 -1.0279 1.0774 9 6 7.7764 -1.1335 1.0171 10 6 8.5919 -0.1235 1.5527 11 7 9.8996 -0.2541 1.4856 12 6 10.4521 -1.3247 0.9071 13 6 11.8583 -1.4253 0.8493 14 1 12.3195 -2.2846 0.3853 15 6 12.6563 -0.4101 1.3939 16 7 12.0982 0.6296 1.9547 17 14 14.5180 -0.5429 1.3167 18 1 14.9506 -0.6173 -0.1019 19 1 15.1264 0.6507 1.9573 20 1 14.9570 -1.7675 2.0329 21 7 9.7077 -2.3028 0.3823 22 6 8.3937 -2.2433 0.4178 23 6 5.5038 -2.0347 0.5302 24 6 4.1299 -1.9318 0.5932 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 1.6765 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6054 -1.7199 1.2950 33 1 1.7517 -0.1584 2.1369 34 1 3.8620 1.0318 2.1923 35 1 6.3138 0.8659 2.0980 36 1 8.1519 0.7464 2.0176 37 1 12.6506 1.3321 2.3319 38 1 7.7981 -3.0374 -0.0078 39 1 5.9613 -2.8933 0.0614 40 1 3.5114 -2.7113 0.1735 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241325746.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:16 Heat of formation + Delta-G solvation = 40.988271 kcal Electronic energy + Delta-G solvation = -20567.383059 eV Core-core repulsion = 17538.802154 eV Total energy + Delta-G solvation = -3028.580905 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.45117 -38.55151 -36.14150 -34.02870 -32.23833 -31.90163 -30.47799 -29.52037 -27.22994 -27.11660 -24.99351 -23.48622 -22.29471 -21.32361 -20.53116 -19.83192 -18.01433 -16.37120 -16.11959 -15.32026 -15.08063 -14.96033 -14.41341 -14.29582 -13.95121 -13.40586 -13.16480 -13.06568 -12.73538 -12.57496 -12.27434 -12.18878 -12.14113 -11.81904 -11.50042 -11.40751 -11.35710 -10.91777 -10.86887 -10.72702 -10.59351 -10.40912 -10.37506 -9.69102 -9.27977 -9.21869 -8.82862 -8.47250 -7.43400 -7.29895 -6.70827 -4.83321 1.50978 1.89765 2.68964 2.91694 2.95911 2.98809 3.07197 3.75031 4.24667 4.61047 4.81458 4.85151 4.94631 5.23742 5.36240 5.39746 5.49906 5.56245 5.59092 5.62487 5.71614 5.76896 5.81858 5.82500 5.85008 5.89411 5.97440 6.04944 6.14133 6.21944 6.27963 6.31594 6.40596 6.56501 6.74243 6.83459 6.92186 7.00931 7.06096 7.44574 7.46305 7.59253 7.98719 8.32439 8.40272 8.97246 9.93712 10.12659 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.045746 B = 0.003010 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.930162 B = 9300.950900 C = 9677.034646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.150 4.150 4 C -0.067 4.067 5 C -0.124 4.124 6 C -0.102 4.102 7 C -0.145 4.145 8 C 0.035 3.965 9 C -0.330 4.330 10 C 0.181 3.819 11 N -0.509 5.509 12 C 0.379 3.621 13 C -0.376 4.376 14 H 0.096 0.904 15 C 0.060 3.940 16 N -0.697 5.697 17 Si 0.923 3.077 18 H -0.261 1.261 19 H -0.274 1.274 20 H -0.261 1.261 21 N -0.594 5.594 22 C 0.187 3.813 23 C -0.146 4.146 24 C -0.105 4.105 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.111 0.889 35 H 0.117 0.883 36 H 0.131 0.869 37 H 0.280 0.720 38 H 0.132 0.868 39 H 0.116 0.884 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.656 1.013 -0.852 14.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.207 4.207 4 C -0.105 4.105 5 C -0.124 4.124 6 C -0.120 4.120 7 C -0.163 4.163 8 C 0.033 3.967 9 C -0.340 4.340 10 C 0.004 3.996 11 N -0.224 5.224 12 C 0.147 3.853 13 C -0.409 4.409 14 H 0.114 0.886 15 C -0.169 4.169 16 N -0.317 5.317 17 Si 0.746 3.254 18 H -0.185 1.185 19 H -0.199 1.199 20 H -0.185 1.185 21 N -0.312 5.312 22 C 0.012 3.988 23 C -0.164 4.164 24 C -0.123 4.123 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.129 0.871 35 H 0.135 0.865 36 H 0.149 0.851 37 H 0.091 0.909 38 H 0.149 0.851 39 H 0.134 0.866 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.379 1.161 -0.773 13.451 hybrid contribution -0.294 0.106 0.052 0.317 sum -13.673 1.268 -0.721 13.750 Atomic orbital electron populations 1.21858 0.95583 1.01452 1.01524 1.21094 0.94881 0.96670 0.98396 1.21909 1.02142 0.95611 1.01040 1.20549 0.91867 1.00387 0.97681 1.19611 0.94731 0.95783 1.02312 1.20794 0.93428 0.97953 0.99822 1.21140 0.94274 0.98597 1.02299 1.18703 0.92090 0.92668 0.93191 1.19772 0.92041 1.02983 1.19205 1.23064 0.90565 0.94907 0.91060 1.69350 1.09308 1.24011 1.19770 1.19960 0.94402 0.83823 0.87141 1.19482 0.88357 1.04447 1.28619 0.88561 1.26237 1.02216 0.94492 0.93949 1.70109 1.37739 1.04564 1.19247 0.86114 0.80237 0.79061 0.79971 1.18513 1.19883 1.18508 1.68648 1.05706 1.31210 1.25644 1.22689 0.91288 0.93913 0.90883 1.21105 0.93166 0.99484 1.02662 1.20774 0.94496 0.97380 0.99630 0.92843 0.92897 0.92877 0.91229 0.93244 0.93025 0.91719 0.91717 0.91683 0.87079 0.86471 0.85141 0.90863 0.85081 0.86595 0.87151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.19 37.16 0.34 -0.86 16 2 C -0.09 -0.91 2.91 -90.62 -0.26 -1.18 16 3 C -0.15 -1.52 8.76 37.16 0.33 -1.20 16 4 C -0.07 -0.73 4.83 -27.89 -0.13 -0.86 16 5 C -0.12 -1.69 4.72 -104.50 -0.49 -2.19 16 6 C -0.10 -1.48 7.93 -39.63 -0.31 -1.79 16 7 C -0.14 -2.44 9.45 -39.17 -0.37 -2.81 16 8 C 0.04 0.66 5.88 -104.87 -0.62 0.05 16 9 C -0.33 -7.31 5.93 -104.28 -0.62 -7.93 16 10 C 0.18 4.31 10.70 -16.83 -0.18 4.13 16 11 N -0.51 -13.86 7.83 -12.41 -0.10 -13.95 16 12 C 0.38 10.55 7.35 -158.16 -1.16 9.39 16 13 C -0.38 -10.02 9.35 -37.78 -0.35 -10.37 16 14 H 0.10 2.44 7.85 -52.49 -0.41 2.03 16 15 C 0.06 1.46 5.50 -17.34 -0.10 1.36 16 16 N -0.70 -17.70 11.40 55.56 0.63 -17.06 16 17 Si 0.92 17.76 29.56 -169.99 -5.02 12.74 16 18 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 19 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 20 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 21 N -0.59 -15.61 10.34 -12.41 -0.13 -15.74 16 22 C 0.19 4.30 10.70 -16.83 -0.18 4.12 16 23 C -0.15 -2.43 9.45 -39.17 -0.37 -2.80 16 24 C -0.10 -1.51 9.68 -39.64 -0.38 -1.90 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.76 6.26 -51.93 -0.33 0.44 16 32 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 33 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 34 H 0.11 1.38 8.03 -52.49 -0.42 0.96 16 35 H 0.12 1.90 6.29 -52.49 -0.33 1.57 16 36 H 0.13 2.73 6.33 -52.49 -0.33 2.40 16 37 H 0.28 6.35 8.29 -40.82 -0.34 6.01 16 38 H 0.13 2.55 6.33 -52.48 -0.33 2.22 16 39 H 0.12 1.81 6.29 -52.49 -0.33 1.48 16 40 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 331.56 15.07 5.00 5.00 Total: -1.00 -28.86 331.56 -9.91 -38.77 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -5.42 Total: 5.08 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -4.87 Total: -14.82 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: 0.41 Total: -46.76 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.02 Total: 12.74 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.86 -9.91 -38.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241325746.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.755 kcal (2) G-P(sol) polarization free energy of solvation -28.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds