Wall clock time and date at job start Tue Mar 31 2020 06:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46890 * 1 3 3 C 1.46836 * 111.00269 * 2 1 4 4 C 1.50165 * 110.25301 * 174.63797 * 3 2 1 5 5 C 1.31654 * 123.03496 * 342.89394 * 4 3 2 6 6 C 1.47570 * 118.67553 * 180.02562 * 5 4 3 7 7 C 1.39390 * 120.30258 * 104.72439 * 6 5 4 8 8 C 1.38258 * 120.07922 * 179.83483 * 7 6 5 9 9 C 1.38070 * 120.79725 * 0.41900 * 8 7 6 10 10 C 1.39126 * 120.28881 * 359.80500 * 9 8 7 11 11 N 1.38191 * 132.73822 * 180.02562 * 10 9 8 12 12 H 0.97003 * 124.70009 * 359.97438 * 11 10 9 13 13 C 1.35573 * 110.59556 * 180.02562 * 11 10 9 14 14 C 1.39014 * 109.23576 * 359.97438 * 13 11 10 15 15 C 1.40977 * 126.92458 * 179.97438 * 14 13 11 16 16 H 1.08005 * 119.99910 * 180.02562 * 15 14 13 17 17 C 1.39673 * 120.00348 * 0.02991 * 15 14 13 18 18 N 1.31084 * 120.00103 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00261 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47424 * 89.99780 * 19 17 15 21 21 H 1.48499 * 109.47497 * 209.99770 * 19 17 15 22 22 H 1.48503 * 109.47440 * 329.99858 * 19 17 15 23 23 C 1.40241 * 119.38766 * 0.02562 * 10 9 8 24 24 C 1.50335 * 122.65650 * 0.36284 * 5 4 3 25 25 C 1.47214 * 111.00051 * 123.01063 * 2 1 3 26 26 H 1.09006 * 109.47391 * 56.04814 * 1 2 3 27 27 H 1.09007 * 109.47045 * 176.04486 * 1 2 3 28 28 H 1.08997 * 109.47535 * 296.04568 * 1 2 3 29 29 H 1.08999 * 109.33842 * 54.39603 * 3 2 1 30 30 H 1.09004 * 109.21270 * 294.79838 * 3 2 1 31 31 H 1.08001 * 118.48353 * 162.91770 * 4 3 2 32 32 H 1.08000 * 119.95855 * 0.02562 * 7 6 5 33 33 H 1.07995 * 119.60128 * 180.20284 * 8 7 6 34 34 H 1.08005 * 119.86075 * 179.82824 * 9 8 7 35 35 H 1.08000 * 125.38137 * 180.02562 * 13 11 10 36 36 H 0.96997 * 120.00289 * 180.02562 * 18 17 15 37 37 H 1.08995 * 109.43682 * 103.53468 * 24 5 4 38 38 H 1.09004 * 109.43319 * 223.39618 * 24 5 4 39 39 H 1.09004 * 109.63069 * 286.94184 * 25 2 1 40 40 H 1.09000 * 109.62523 * 47.31974 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3708 0.0000 4 6 3.4909 1.3534 0.1317 5 6 4.1622 0.3017 0.5519 6 6 5.6323 0.3908 0.6452 7 6 6.2515 0.5238 1.8869 8 6 7.6293 0.6035 1.9691 9 6 8.4091 0.5617 0.8305 10 6 7.8162 0.4341 -0.4217 11 7 8.3331 0.3664 -1.7015 12 1 9.2779 0.4032 -1.9182 13 6 7.3365 0.2425 -2.6123 14 6 6.1130 0.2237 -1.9528 15 6 4.8362 0.1091 -2.5395 16 1 3.9539 0.1069 -1.9166 17 6 4.7122 -0.0019 -3.9263 18 7 5.7830 0.0011 -4.6824 19 14 3.0206 -0.1545 -4.7036 20 1 2.4944 1.1990 -5.0141 21 1 3.1208 -0.9459 -5.9561 22 1 2.1013 -0.8380 -3.7585 23 6 6.4196 0.3489 -0.5164 24 6 3.4923 -0.9889 0.9337 25 6 1.9965 -0.7487 1.1525 26 1 -0.3634 0.5740 -0.8525 27 1 -0.3633 -1.0253 -0.0709 28 1 -0.3634 0.4512 0.9232 29 1 1.5656 1.9224 0.8362 30 1 1.7207 1.8604 -0.9344 31 1 4.0415 2.2449 -0.1302 32 1 5.6544 0.5616 2.7860 33 1 8.1012 0.7032 2.9354 34 1 9.4840 0.6279 0.9121 35 1 7.4719 0.1691 -3.6813 36 1 5.6970 -0.0755 -5.6455 37 1 3.6296 -1.7186 0.1358 38 1 3.9367 -1.3700 1.8532 39 1 1.8484 -0.1698 2.0641 40 1 1.4779 -1.7037 1.2371 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241330315.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:25 Heat of formation + Delta-G solvation = 69.822929 kcal Electronic energy + Delta-G solvation = -22207.187100 eV Core-core repulsion = 19179.856560 eV Total energy + Delta-G solvation = -3027.330541 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.73507 -38.47465 -35.83591 -33.89698 -32.98520 -30.51280 -30.10558 -28.49414 -27.68928 -26.11014 -24.52964 -23.23381 -22.40625 -20.96168 -20.47472 -19.35295 -17.70435 -16.56977 -15.74944 -15.46859 -15.08206 -14.78075 -14.55406 -14.24389 -14.04218 -13.45639 -13.07919 -12.91371 -12.79771 -12.44227 -12.40323 -12.13947 -11.79547 -11.55115 -11.25099 -11.10375 -10.99141 -10.87399 -10.68223 -10.57391 -10.32161 -9.98494 -9.60509 -9.44922 -9.27869 -8.27924 -8.13328 -7.80661 -6.99115 -6.47543 -6.36198 -3.84593 2.13118 2.66709 2.94560 3.19554 3.26903 3.38128 4.22198 4.23269 4.30251 4.63261 4.81379 5.19933 5.23401 5.44580 5.52932 5.67769 5.70908 5.76646 5.81461 5.82463 5.85650 5.98061 6.01512 6.06329 6.11861 6.20047 6.43728 6.57644 6.59324 6.75687 6.86807 7.03175 7.23960 7.30045 7.31298 7.42402 7.52101 7.55313 7.67769 7.78762 7.96424 8.16876 8.46386 8.81803 9.16149 9.29503 9.32940 10.62026 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.011588 B = 0.009528 C = 0.005534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.687558 B = 2938.010703 C = 5058.221922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.534 5.534 3 C 0.094 3.906 4 C -0.153 4.153 5 C -0.047 4.047 6 C 0.002 3.998 7 C -0.180 4.180 8 C -0.116 4.116 9 C -0.155 4.155 10 C 0.083 3.917 11 N -0.592 5.592 12 H 0.392 0.608 13 C -0.101 4.101 14 C 0.019 3.981 15 C -0.405 4.405 16 H 0.089 0.911 17 C 0.052 3.948 18 N -0.839 5.839 19 Si 0.908 3.092 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.258 1.258 23 C -0.111 4.111 24 C -0.073 4.073 25 C 0.057 3.943 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.020 0.980 29 H 0.035 0.965 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.191 0.809 36 H 0.269 0.731 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.032 0.968 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.498 0.390 8.527 9.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.259 5.259 3 C -0.033 4.033 4 C -0.171 4.171 5 C -0.048 4.048 6 C 0.001 3.999 7 C -0.201 4.201 8 C -0.136 4.136 9 C -0.177 4.177 10 C -0.028 4.028 11 N -0.193 5.193 12 H 0.225 0.775 13 C -0.225 4.225 14 C 0.014 3.986 15 C -0.438 4.438 16 H 0.107 0.893 17 C -0.156 4.156 18 N -0.471 5.471 19 Si 0.734 3.266 20 H -0.203 1.203 21 H -0.211 1.211 22 H -0.181 1.181 23 C -0.118 4.118 24 C -0.110 4.110 25 C -0.071 4.071 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.039 0.961 29 H 0.053 0.947 30 H 0.100 0.900 31 H 0.128 0.872 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.116 0.884 35 H 0.207 0.793 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.050 0.950 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.267 0.124 7.689 8.795 hybrid contribution -0.374 0.401 0.041 0.550 sum -4.641 0.525 7.730 9.032 Atomic orbital electron populations 1.22359 0.87910 1.01965 1.00039 1.62322 1.06938 1.14408 1.42183 1.20894 0.93271 0.88690 1.00435 1.22201 0.93805 0.99367 1.01737 1.19471 0.91840 0.94398 0.99061 1.18237 0.91356 0.98618 0.91667 1.20531 0.94039 1.09952 0.95540 1.20272 0.93514 1.03498 0.96271 1.19808 0.97853 1.09780 0.90286 1.18197 0.93490 1.05269 0.85884 1.41573 1.08000 1.65396 1.04340 0.77470 1.23418 0.85602 1.18531 0.94905 1.18096 0.93189 1.00697 0.86611 1.19097 0.92881 1.40629 0.91144 0.89259 1.25637 0.97761 0.94749 0.97482 1.69477 1.29262 1.42765 1.05578 0.86266 0.83202 0.78610 0.78512 1.20294 1.21142 1.18149 1.19443 0.91221 1.06995 0.94150 1.20444 0.92663 0.96298 1.01606 1.22169 0.96089 0.97837 0.90976 0.91512 0.91546 0.96144 0.94672 0.89967 0.87171 0.87863 0.87696 0.88372 0.79269 0.91993 0.89661 0.91215 0.95002 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.54 60.06 0.57 0.90 16 2 N -0.53 -8.64 4.97 -244.44 -1.21 -9.85 16 3 C 0.09 1.54 5.65 -5.27 -0.03 1.51 16 4 C -0.15 -2.92 8.10 -36.44 -0.30 -3.21 16 5 C -0.05 -0.93 3.94 -102.86 -0.41 -1.34 16 6 C 0.00 0.04 5.12 -104.85 -0.54 -0.50 16 7 C -0.18 -3.45 9.78 -39.15 -0.38 -3.83 16 8 C -0.12 -2.12 9.99 -39.64 -0.40 -2.52 16 9 C -0.16 -3.04 10.06 -39.31 -0.40 -3.44 16 10 C 0.08 1.89 7.23 -83.92 -0.61 1.28 16 11 N -0.59 -13.17 5.99 -9.81 -0.06 -13.23 16 12 H 0.39 7.20 8.96 -40.82 -0.37 6.83 16 13 C -0.10 -2.59 10.89 -15.61 -0.17 -2.76 16 14 C 0.02 0.52 6.10 -104.84 -0.64 -0.12 16 15 C -0.40 -10.94 8.93 -38.01 -0.34 -11.28 16 16 H 0.09 2.37 5.23 -52.48 -0.27 2.09 16 17 C 0.05 1.38 5.49 -17.34 -0.10 1.28 16 18 N -0.84 -22.30 10.33 55.54 0.57 -21.72 16 19 Si 0.91 20.35 29.56 -169.99 -5.02 15.33 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 21 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 23 C -0.11 -2.73 6.19 -104.60 -0.65 -3.38 16 24 C -0.07 -1.26 6.03 -28.02 -0.17 -1.43 16 25 C 0.06 0.85 5.58 -3.62 -0.02 0.83 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 28 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.04 0.51 8.12 -51.93 -0.42 0.09 16 30 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.11 2.22 7.98 -52.49 -0.42 1.81 16 32 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.10 1.58 8.06 -52.49 -0.42 1.15 16 34 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 35 H 0.19 5.05 5.68 -52.49 -0.30 4.75 16 36 H 0.27 6.68 8.30 -40.82 -0.34 6.34 16 37 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.03 0.44 8.07 -51.93 -0.42 0.02 16 40 H 0.07 0.94 8.04 -51.93 -0.42 0.52 16 LS Contribution 324.20 15.07 4.89 4.89 Total: -1.00 -29.23 324.20 -10.95 -40.18 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -5.55 Total: 12.43 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: -4.56 Total: -28.02 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: -0.70 Total: -44.81 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.23 -10.95 -40.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241330315.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.001 kcal (2) G-P(sol) polarization free energy of solvation -29.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds