Wall clock time and date at job start Tue Mar 31 2020 06:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46510 * 119.99910 * 2 1 4 4 C 1.38915 * 120.00399 * 179.97438 * 2 1 3 5 5 C 1.39242 * 119.57230 * 5.00573 * 4 2 1 6 6 C 1.38056 * 119.21791 * 179.97438 * 5 4 2 7 7 C 1.39966 * 118.40934 * 359.97438 * 6 5 4 8 8 C 1.48353 * 120.46057 * 180.02562 * 7 6 5 9 9 C 1.39358 * 120.11845 * 359.72118 * 8 7 6 10 10 C 1.38019 * 119.86995 * 179.74526 * 9 8 7 11 11 C 1.38319 * 120.12736 * 0.55502 * 10 9 8 12 12 C 1.50699 * 119.88309 * 179.72142 * 11 10 9 13 13 C 1.50706 * 109.47066 * 269.97978 * 12 11 10 14 14 H 1.07998 * 119.99640 * 359.97438 * 13 12 11 15 15 C 1.37868 * 119.99863 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00336 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99904 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46984 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47247 * 120.00044 * 17 15 13 20 20 H 1.48504 * 109.47234 * 240.00369 * 17 15 13 21 21 C 1.38328 * 120.24422 * 359.69761 * 11 10 9 22 22 C 1.38013 * 120.12516 * 0.02562 * 21 11 10 23 23 C 1.39168 * 119.08739 * 359.97438 * 7 6 5 24 24 N 1.31822 * 120.68426 * 359.73468 * 23 7 6 25 25 H 1.09002 * 109.47391 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46813 * 240.00026 * 1 2 3 27 27 H 1.09004 * 109.47041 * 120.00153 * 1 2 3 28 28 H 1.08999 * 109.47096 * 89.99783 * 3 2 1 29 29 H 1.09001 * 109.46763 * 210.00177 * 3 2 1 30 30 H 1.09005 * 109.46576 * 330.00159 * 3 2 1 31 31 H 1.07998 * 120.38678 * 359.96936 * 5 4 2 32 32 H 1.08011 * 120.79616 * 180.02562 * 6 5 4 33 33 H 1.07993 * 120.06247 * 0.02562 * 9 8 7 34 34 H 1.08005 * 119.93556 * 180.25183 * 10 9 8 35 35 H 1.09005 * 109.46601 * 29.97272 * 12 11 10 36 36 H 1.08994 * 109.47826 * 149.97826 * 12 11 10 37 37 H 0.97002 * 119.99803 * 179.97438 * 16 15 13 38 38 H 1.08010 * 119.93793 * 180.02562 * 21 11 10 39 39 H 1.07996 * 120.06371 * 180.02562 * 22 21 11 40 40 H 1.08000 * 119.65905 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1596 -1.2030 0.0005 5 6 1.4585 -2.4014 -0.1046 6 6 2.1563 -3.5927 -0.1039 7 6 3.5511 -3.5473 0.0028 8 6 4.3462 -4.7998 0.0076 9 6 3.7067 -6.0343 -0.0885 10 6 4.4518 -7.1962 -0.0889 11 6 5.8296 -7.1374 0.0175 12 6 6.6372 -8.4097 0.0229 13 6 6.8001 -8.8953 1.4403 14 1 6.3630 -8.3380 2.2556 15 6 7.5072 -10.0509 1.6961 16 7 8.0400 -10.7292 0.7032 17 14 7.7098 -10.6524 3.4530 18 1 7.0214 -9.7173 4.3788 19 1 7.1142 -12.0063 3.5844 20 1 9.1543 -10.7119 3.7924 21 6 6.4691 -5.9150 0.1186 22 6 5.7346 -4.7465 0.1142 23 6 4.1822 -2.3110 0.1033 24 7 3.4807 -1.1949 0.0932 25 1 -0.3634 1.0277 0.0005 26 1 -0.3633 -0.5138 0.8900 27 1 -0.3633 -0.5139 -0.8900 28 1 2.3791 1.5835 1.0277 29 1 3.1499 1.1384 -0.5139 30 1 1.6083 2.0284 -0.5138 31 1 0.3816 -2.3990 -0.1857 32 1 1.6383 -4.5370 -0.1845 33 1 2.6307 -6.0816 -0.1672 34 1 3.9576 -8.1533 -0.1675 35 1 6.1218 -9.1696 -0.5645 36 1 7.6188 -8.2190 -0.4108 37 1 8.5379 -11.5420 0.8833 38 1 7.5453 -5.8748 0.2010 39 1 6.2349 -3.7927 0.1927 40 1 5.2580 -2.2652 0.1856 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241369395.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:43 Heat of formation + Delta-G solvation = 61.261774 kcal Electronic energy + Delta-G solvation = -20276.670764 eV Core-core repulsion = 17248.968984 eV Total energy + Delta-G solvation = -3027.701780 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.38963 -38.57420 -36.61461 -33.77870 -32.64286 -31.78820 -30.32955 -29.67449 -28.44654 -26.96525 -25.05589 -23.74563 -23.01992 -21.62919 -21.23598 -19.95889 -17.73704 -16.55687 -16.40055 -16.21491 -15.50946 -15.25028 -14.61532 -14.50891 -14.08230 -13.93078 -13.59325 -13.46753 -13.25856 -12.90318 -12.60479 -12.54786 -12.48166 -12.18430 -12.04704 -11.72820 -11.29357 -11.14254 -10.74463 -10.52613 -10.23523 -10.20128 -9.74007 -9.55923 -9.40187 -9.34870 -8.43702 -8.31458 -8.20993 -7.07530 -6.04751 -4.08981 1.01964 1.33977 2.05865 2.39423 2.75802 3.29141 3.36861 3.42194 3.93244 4.40849 4.44285 4.62800 4.69274 4.83923 4.95526 5.01877 5.05423 5.14884 5.22154 5.29476 5.31584 5.39414 5.44041 5.52558 5.65586 5.77411 5.89342 5.98576 6.07832 6.21493 6.36006 6.51890 6.62310 6.71992 6.77372 7.11273 7.16038 7.17578 7.23504 7.49690 7.70594 7.84100 7.91006 8.11854 8.30865 8.96722 9.55064 11.04718 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.038827 B = 0.002779 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.969964 B =10072.409480 C =10121.064457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.622 5.622 3 C 0.103 3.897 4 C 0.386 3.614 5 C -0.231 4.231 6 C -0.034 4.034 7 C -0.129 4.129 8 C -0.071 4.071 9 C -0.113 4.113 10 C -0.122 4.122 11 C -0.029 4.029 12 C 0.045 3.955 13 C -0.510 4.510 14 H 0.058 0.942 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.895 3.105 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.121 4.121 22 C -0.113 4.113 23 C 0.148 3.852 24 N -0.538 5.538 25 H 0.076 0.924 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.045 0.955 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.129 0.871 32 H 0.135 0.865 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.029 0.971 36 H 0.029 0.971 37 H 0.261 0.739 38 H 0.120 0.880 39 H 0.114 0.886 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.204 20.243 -2.923 24.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.338 5.338 3 C -0.040 4.040 4 C 0.153 3.847 5 C -0.256 4.256 6 C -0.060 4.060 7 C -0.133 4.133 8 C -0.072 4.072 9 C -0.131 4.131 10 C -0.140 4.140 11 C -0.029 4.029 12 C 0.008 3.992 13 C -0.548 4.548 14 H 0.076 0.924 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.722 3.278 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.139 4.139 22 C -0.131 4.131 23 C -0.009 4.009 24 N -0.254 5.254 25 H 0.094 0.906 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.147 0.853 32 H 0.153 0.847 33 H 0.130 0.870 34 H 0.137 0.863 35 H 0.047 0.953 36 H 0.048 0.952 37 H 0.071 0.929 38 H 0.138 0.862 39 H 0.132 0.868 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -13.789 21.077 -2.903 25.354 hybrid contribution -0.309 -1.236 0.956 1.592 sum -14.098 19.842 -1.947 24.418 Atomic orbital electron populations 1.21624 0.78681 1.02640 1.01387 1.46104 1.04894 1.03111 1.79672 1.21534 0.97474 0.83883 1.01138 1.18306 0.88524 0.85692 0.92185 1.21285 1.00670 0.91667 1.11930 1.21412 0.93244 0.97882 0.93424 1.19560 0.93462 0.94062 1.06258 1.18312 0.92768 0.91125 1.04985 1.21035 0.98848 0.91930 1.01307 1.21018 0.94044 0.97572 1.01363 1.20776 0.94038 0.96890 0.91187 1.18396 0.94492 0.88494 0.97779 1.21092 1.33628 1.08242 0.91885 0.92390 1.25016 0.95518 0.96590 0.97259 1.69968 1.35541 1.16936 1.30875 0.86483 0.77867 0.78675 0.84726 1.19642 1.20946 1.20923 1.21026 0.99961 0.91768 1.01158 1.21044 0.92817 0.98035 1.01222 1.22549 0.99525 0.86050 0.92796 1.67093 1.06036 1.31805 1.20448 0.90559 0.92619 0.92596 0.93660 0.90560 0.92158 0.85325 0.84743 0.86981 0.86275 0.95271 0.95241 0.92888 0.86194 0.86800 0.82528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.64 9.40 59.85 0.56 1.21 16 2 N -0.62 -6.20 3.39 -189.64 -0.64 -6.84 16 3 C 0.10 0.86 10.39 59.85 0.62 1.48 16 4 C 0.39 4.88 7.37 -155.04 -1.14 3.74 16 5 C -0.23 -2.68 9.32 -39.28 -0.37 -3.05 16 6 C -0.03 -0.43 9.52 -39.00 -0.37 -0.80 16 7 C -0.13 -1.86 5.89 -104.74 -0.62 -2.48 16 8 C -0.07 -1.16 5.88 -104.90 -0.62 -1.77 16 9 C -0.11 -1.88 9.44 -39.25 -0.37 -2.25 16 10 C -0.12 -2.35 9.68 -39.63 -0.38 -2.74 16 11 C -0.03 -0.62 5.07 -104.56 -0.53 -1.15 16 12 C 0.05 1.15 5.10 -29.03 -0.15 1.01 16 13 C -0.51 -14.24 9.09 -34.44 -0.31 -14.55 16 14 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 17 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 C -0.12 -2.34 9.68 -39.63 -0.38 -2.72 16 22 C -0.11 -1.88 9.44 -39.25 -0.37 -2.25 16 23 C 0.15 2.06 10.59 -17.21 -0.18 1.88 16 24 N -0.54 -7.52 9.13 -12.17 -0.11 -7.63 16 25 H 0.08 0.33 7.79 -51.93 -0.40 -0.08 16 26 H 0.06 0.34 8.10 -51.93 -0.42 -0.08 16 27 H 0.06 0.33 7.73 -51.93 -0.40 -0.08 16 28 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.74 7.44 -51.93 -0.39 0.35 16 30 H 0.06 0.35 7.92 -51.93 -0.41 -0.06 16 31 H 0.13 1.16 6.68 -52.49 -0.35 0.81 16 32 H 0.13 1.46 6.32 -52.48 -0.33 1.13 16 33 H 0.11 1.54 6.27 -52.49 -0.33 1.21 16 34 H 0.12 2.22 8.06 -52.48 -0.42 1.80 16 35 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 36 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.12 2.24 8.06 -52.48 -0.42 1.81 16 39 H 0.11 1.56 6.23 -52.49 -0.33 1.24 16 40 H 0.16 1.91 6.21 -52.49 -0.33 1.58 16 LS Contribution 335.14 15.07 5.05 5.05 Total: -1.00 -31.71 335.14 -10.03 -41.74 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -5.34 Total: -0.29 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -4.71 Total: -22.93 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: -0.02 Total: -40.08 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.71 -10.03 -41.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241369395.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.001 kcal (2) G-P(sol) polarization free energy of solvation -31.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds