Wall clock time and date at job start Tue Mar 31 2020 06:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46505 * 120.00157 * 2 1 4 4 C 1.38915 * 120.00192 * 180.02562 * 2 1 3 5 5 C 1.39246 * 119.57360 * 5.00109 * 4 2 1 6 6 C 1.38055 * 119.22330 * 180.02562 * 5 4 2 7 7 C 1.39976 * 118.39930 * 359.97438 * 6 5 4 8 8 C 1.48361 * 120.45151 * 180.02562 * 7 6 5 9 9 C 1.39371 * 120.12648 * 359.97361 * 8 7 6 10 10 C 1.37989 * 119.87609 * 180.02562 * 9 8 7 11 11 C 1.38344 * 120.12500 * 0.02562 * 10 9 8 12 12 C 1.38297 * 120.24576 * 359.97438 * 11 10 9 13 13 C 1.50704 * 119.93750 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47365 * 270.00303 * 13 12 11 15 15 H 1.08004 * 119.99754 * 0.02562 * 14 13 12 16 16 C 1.37868 * 119.99922 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00366 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99904 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47134 * 59.99576 * 18 16 14 20 20 H 1.48494 * 109.47431 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47006 * 299.99940 * 18 16 14 22 22 C 1.38033 * 120.12407 * 0.02562 * 12 11 10 23 23 C 1.39169 * 119.09369 * 0.27538 * 7 6 5 24 24 N 1.31819 * 120.68101 * 359.43393 * 23 7 6 25 25 H 1.08998 * 109.46881 * 270.00085 * 1 2 3 26 26 H 1.09005 * 109.47024 * 29.99800 * 1 2 3 27 27 H 1.08996 * 109.47093 * 149.99408 * 1 2 3 28 28 H 1.08994 * 109.47291 * 270.00796 * 3 2 1 29 29 H 1.08999 * 109.46619 * 30.00369 * 3 2 1 30 30 H 1.09000 * 109.47248 * 149.99725 * 3 2 1 31 31 H 1.08001 * 120.38732 * 0.03810 * 5 4 2 32 32 H 1.07998 * 120.80082 * 179.97438 * 6 5 4 33 33 H 1.08001 * 120.05804 * 0.02562 * 9 8 7 34 34 H 1.08002 * 119.93341 * 180.02562 * 10 9 8 35 35 H 1.08000 * 119.87312 * 179.97438 * 11 10 9 36 36 H 1.08995 * 109.47124 * 30.00218 * 13 12 11 37 37 H 1.09000 * 109.47004 * 150.00087 * 13 12 11 38 38 H 0.97008 * 120.00067 * 180.02562 * 17 16 14 39 39 H 1.08005 * 120.06005 * 180.27537 * 22 12 11 40 40 H 1.07992 * 119.65365 * 179.72016 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.1596 -1.2030 -0.0005 5 6 1.4585 -2.4014 -0.1066 6 6 2.1560 -3.5927 -0.1059 7 6 3.5509 -3.5474 0.0018 8 6 4.3457 -4.8002 0.0066 9 6 3.7067 -6.0345 -0.0958 10 6 4.4510 -7.1964 -0.0902 11 6 5.8290 -7.1377 0.0173 12 6 6.4684 -5.9157 0.1192 13 6 7.9699 -5.8599 0.2354 14 6 8.3632 -5.9033 1.6896 15 1 7.6020 -5.9655 2.4532 16 6 9.6947 -5.8646 2.0450 17 7 10.6217 -5.7903 1.1151 18 14 10.1823 -5.9191 3.8475 19 1 9.6846 -7.1785 4.4570 20 1 11.6618 -5.8652 3.9620 21 1 9.5878 -4.7574 4.5564 22 6 5.7339 -4.7470 0.1147 23 6 4.1815 -2.3115 0.1095 24 7 3.4802 -1.1954 0.0994 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5139 28 1 2.3791 1.5835 -1.0276 29 1 1.6085 2.0283 0.5139 30 1 3.1500 1.1384 0.5139 31 1 0.3816 -2.3988 -0.1888 32 1 1.6380 -4.5369 -0.1865 33 1 2.6309 -6.0814 -0.1793 34 1 3.9568 -8.1534 -0.1699 35 1 6.4075 -8.0497 0.0217 36 1 8.4065 -6.7125 -0.2846 37 1 8.3348 -4.9355 -0.2122 38 1 11.5586 -5.7635 1.3652 39 1 6.2346 -3.7930 0.1899 40 1 5.2569 -2.2662 0.1976 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241370212.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:48 Heat of formation + Delta-G solvation = 64.216828 kcal Electronic energy + Delta-G solvation = -20528.358603 eV Core-core repulsion = 17500.784963 eV Total energy + Delta-G solvation = -3027.573639 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.34275 -38.55887 -36.54223 -33.67573 -32.66500 -31.68445 -31.07241 -28.65314 -28.42823 -27.01453 -25.21583 -23.78523 -22.95835 -21.97019 -20.97241 -19.67459 -17.70238 -16.49314 -16.35344 -16.04329 -15.52531 -15.38738 -14.55833 -14.51185 -14.26848 -13.99197 -13.55497 -13.34434 -13.21824 -12.81469 -12.56540 -12.36805 -12.33858 -12.15576 -11.82722 -11.78348 -11.27819 -11.04786 -10.77271 -10.48181 -10.33141 -10.20305 -9.68846 -9.52707 -9.43254 -9.27547 -8.43840 -8.40344 -7.88594 -7.13144 -6.03120 -4.06968 1.04863 1.39981 2.11739 2.39307 2.81621 3.33570 3.37490 3.41024 3.98339 4.42505 4.47650 4.64986 4.77275 4.93260 4.99224 5.04526 5.08269 5.16686 5.29519 5.31402 5.36449 5.46264 5.50594 5.57128 5.75126 5.77402 5.94382 6.03358 6.10356 6.16310 6.39495 6.58659 6.67033 6.75761 6.81573 7.09219 7.18359 7.20531 7.29067 7.51139 7.71821 7.85362 7.92758 8.19868 8.32813 8.98118 9.56941 11.06756 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.019326 B = 0.003630 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.473474 B = 7711.355822 C = 8687.782587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.622 5.622 3 C 0.100 3.900 4 C 0.390 3.610 5 C -0.239 4.239 6 C -0.030 4.030 7 C -0.138 4.138 8 C -0.041 4.041 9 C -0.143 4.143 10 C -0.120 4.120 11 C -0.123 4.123 12 C -0.029 4.029 13 C 0.047 3.953 14 C -0.512 4.512 15 H 0.057 0.943 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.895 3.105 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.116 4.116 23 C 0.158 3.842 24 N -0.538 5.538 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.045 0.955 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.130 0.870 32 H 0.134 0.866 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.263 0.737 39 H 0.120 0.880 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.415 8.347 -3.795 22.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.337 5.337 3 C -0.043 4.043 4 C 0.157 3.843 5 C -0.263 4.263 6 C -0.056 4.056 7 C -0.142 4.142 8 C -0.042 4.042 9 C -0.161 4.161 10 C -0.138 4.138 11 C -0.141 4.141 12 C -0.029 4.029 13 C 0.010 3.990 14 C -0.550 4.550 15 H 0.075 0.925 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.723 3.277 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.134 4.134 23 C 0.000 4.000 24 N -0.254 5.254 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.148 0.852 32 H 0.152 0.848 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.138 0.862 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -19.905 9.350 -3.759 22.310 hybrid contribution -0.127 -0.836 0.969 1.286 sum -20.032 8.514 -2.790 21.944 Atomic orbital electron populations 1.21667 0.78805 1.02820 1.01363 1.46110 1.04878 1.03167 1.79569 1.21536 0.97797 0.83872 1.01112 1.18363 0.88644 0.85712 0.91613 1.21304 1.00669 0.91719 1.12625 1.21379 0.93162 0.97773 0.93262 1.19577 0.93425 0.94142 1.07094 1.18479 0.92917 0.91128 1.01657 1.20848 0.98666 0.91933 1.04678 1.20940 0.94280 0.97370 1.01203 1.21156 0.93858 0.98121 1.01009 1.20614 0.99039 0.91735 0.91542 1.18367 0.84559 0.98423 0.97603 1.21019 0.91772 1.50949 0.91309 0.92497 1.24999 0.96552 0.95162 0.97544 1.69945 1.00516 1.50269 1.32582 0.86605 0.77244 0.78759 0.85140 1.20180 1.21240 1.20128 1.21102 0.92011 0.98811 1.01442 1.22697 0.99863 0.85953 0.91453 1.67127 1.05936 1.31822 1.20490 0.93159 0.91248 0.91124 0.93668 0.92172 0.90083 0.85204 0.84845 0.87133 0.86957 0.86421 0.95264 0.95261 0.92780 0.86215 0.82066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.68 10.28 59.85 0.61 1.29 16 2 N -0.62 -6.74 3.39 -189.65 -0.64 -7.38 16 3 C 0.10 0.94 10.50 59.85 0.63 1.57 16 4 C 0.39 5.28 7.37 -155.03 -1.14 4.14 16 5 C -0.24 -2.88 9.26 -39.27 -0.36 -3.25 16 6 C -0.03 -0.39 9.52 -39.00 -0.37 -0.77 16 7 C -0.14 -2.14 5.89 -104.73 -0.62 -2.75 16 8 C -0.04 -0.71 5.88 -104.90 -0.62 -1.32 16 9 C -0.14 -2.26 9.44 -39.25 -0.37 -2.63 16 10 C -0.12 -1.97 10.03 -39.63 -0.40 -2.37 16 11 C -0.12 -2.39 9.69 -39.52 -0.38 -2.78 16 12 C -0.03 -0.63 5.06 -104.67 -0.53 -1.16 16 13 C 0.05 1.21 5.10 -29.03 -0.15 1.06 16 14 C -0.51 -14.35 9.09 -34.44 -0.31 -14.66 16 15 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 16 C 0.06 1.67 5.46 -17.83 -0.10 1.57 16 17 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 18 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 C -0.12 -2.27 9.09 -39.25 -0.36 -2.63 16 23 C 0.16 2.49 10.59 -17.21 -0.18 2.30 16 24 N -0.54 -8.29 9.05 -12.17 -0.11 -8.40 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 0.36 8.07 -51.93 -0.42 -0.06 16 27 H 0.07 0.44 5.96 -51.93 -0.31 0.13 16 28 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.42 8.07 -51.93 -0.42 0.00 16 30 H 0.08 0.90 7.29 -51.93 -0.38 0.52 16 31 H 0.13 1.18 6.00 -52.49 -0.32 0.87 16 32 H 0.13 1.43 6.32 -52.49 -0.33 1.10 16 33 H 0.11 1.41 6.27 -52.49 -0.33 1.08 16 34 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 36 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 37 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.12 2.27 6.23 -52.48 -0.33 1.95 16 40 H 0.16 2.45 6.21 -52.49 -0.33 2.13 16 LS Contribution 333.87 15.07 5.03 5.03 Total: -1.00 -31.72 333.87 -9.88 -41.60 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.23 Total: 0.59 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: -4.65 Total: -22.37 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: -0.02 Total: -41.46 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.72 -9.88 -41.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241370212.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.813 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds