Wall clock time and date at job start Tue Mar 31 2020 06:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47211 * 110.99831 * 2 1 4 4 C 1.53074 * 108.53903 * 54.09055 * 3 2 1 5 5 C 1.50335 * 109.75457 * 49.03779 * 4 3 2 6 6 C 1.31658 * 122.65403 * 343.91092 * 5 4 3 7 7 C 1.47568 * 118.47987 * 180.11008 * 6 5 4 8 8 C 1.39400 * 120.29992 * 104.75318 * 7 6 5 9 9 C 1.38264 * 120.07842 * 179.97438 * 8 7 6 10 10 C 1.38076 * 120.79602 * 359.75438 * 9 8 7 11 11 C 1.39133 * 120.28652 * 0.49846 * 10 9 8 12 12 N 1.38187 * 132.73032 * 179.82579 * 11 10 9 13 13 H 0.96999 * 124.70173 * 359.72714 * 12 11 10 14 14 C 1.35570 * 110.59296 * 179.70885 * 12 11 10 15 15 C 1.39020 * 109.23859 * 359.97438 * 14 12 11 16 16 C 1.40976 * 126.92914 * 180.02562 * 15 14 12 17 17 H 1.07997 * 119.99988 * 179.97438 * 16 15 14 18 18 C 1.39679 * 119.99687 * 359.95919 * 16 15 14 19 19 N 1.31079 * 120.00319 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99726 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47423 * 89.99949 * 20 18 16 22 22 H 1.48500 * 109.47048 * 209.99957 * 20 18 16 23 23 H 1.48507 * 109.46902 * 329.99886 * 20 18 16 24 24 C 1.40245 * 119.38938 * 359.50772 * 11 10 9 25 25 C 1.46838 * 110.99605 * 123.01120 * 2 1 3 26 26 H 1.09001 * 109.47501 * 296.98854 * 1 2 3 27 27 H 1.09003 * 109.46974 * 56.98977 * 1 2 3 28 28 H 1.08996 * 109.47711 * 176.98739 * 1 2 3 29 29 H 1.09006 * 109.62184 * 173.80700 * 3 2 1 30 30 H 1.09001 * 109.62565 * 294.17707 * 3 2 1 31 31 H 1.08993 * 109.43389 * 169.30148 * 4 3 2 32 32 H 1.09000 * 109.42904 * 289.20657 * 4 3 2 33 33 H 1.07995 * 118.67084 * 163.68975 * 5 4 3 34 34 H 1.07992 * 119.96018 * 359.96564 * 8 7 6 35 35 H 1.07997 * 119.59875 * 180.02562 * 9 8 7 36 36 H 1.07997 * 119.85685 * 180.02562 * 10 9 8 37 37 H 1.08001 * 125.38146 * 179.97438 * 14 12 11 38 38 H 0.96995 * 120.00232 * 180.02562 * 19 18 16 39 39 H 1.08998 * 109.33970 * 167.53571 * 25 2 1 40 40 H 1.09004 * 109.21451 * 47.92801 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9965 1.3743 0.0000 4 6 1.3762 2.1337 1.1755 5 6 1.5016 1.3167 2.4312 6 6 1.7799 0.0299 2.4166 7 6 1.8790 -0.6832 3.7047 8 6 0.8520 -1.5288 4.1213 9 6 0.9499 -2.1951 5.3289 10 6 2.0606 -2.0393 6.1342 11 6 3.0974 -1.1973 5.7445 12 7 4.2985 -0.8537 6.3350 13 1 4.6082 -1.1872 7.1916 14 6 4.9843 0.0140 5.5509 15 6 4.2470 0.2736 4.4013 16 6 4.6104 1.1219 3.3356 17 1 3.9480 1.2420 2.4911 18 6 5.8270 1.8071 3.3720 19 7 6.6310 1.6612 4.3969 20 14 6.3082 2.9317 1.9602 21 1 5.8108 4.3048 2.2293 22 1 7.7872 2.9576 1.8300 23 1 5.7090 2.4266 0.6987 24 6 3.0085 -0.5166 4.5216 25 6 1.9951 -0.7469 1.1496 26 1 -0.3634 0.4664 0.9157 27 1 -0.3633 0.5599 -0.8618 28 1 -0.3634 -1.0262 -0.0540 29 1 3.0806 1.3503 0.1108 30 1 1.7351 1.8668 -0.9366 31 1 1.8925 3.0847 1.3058 32 1 0.3215 2.3186 0.9717 33 1 1.3612 1.8058 3.3837 34 1 -0.0211 -1.6634 3.5003 35 1 0.1499 -2.8486 5.6439 36 1 2.1214 -2.5675 7.0743 37 1 5.9508 0.4367 5.7827 38 1 7.4756 2.1373 4.4224 39 1 3.0620 -0.9206 1.0095 40 1 1.4797 -1.7047 1.2214 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241570640.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:30 Heat of formation + Delta-G solvation = 69.459963 kcal Electronic energy + Delta-G solvation = -22404.936246 eV Core-core repulsion = 19377.589966 eV Total energy + Delta-G solvation = -3027.346280 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.88435 -38.90241 -35.80038 -33.69919 -32.64011 -31.21903 -29.62150 -28.10951 -27.51260 -26.97090 -24.76121 -23.33207 -22.33618 -20.80632 -20.52730 -19.41605 -17.73561 -16.64574 -15.84425 -15.53857 -15.07407 -15.03030 -14.49199 -14.30684 -13.92409 -13.58686 -13.20137 -13.01739 -12.77642 -12.50200 -12.21475 -12.10171 -11.57866 -11.42083 -11.24178 -11.16402 -11.08613 -10.94714 -10.88932 -10.63210 -10.47177 -10.22558 -9.74518 -9.59477 -9.37552 -8.41462 -7.99984 -7.92030 -7.04515 -6.54152 -6.45441 -3.94417 2.07357 2.61416 2.84073 3.09929 3.17840 3.21496 4.10831 4.22532 4.33154 4.57525 4.75842 5.19035 5.33234 5.46582 5.57813 5.58910 5.66700 5.72100 5.79906 5.86553 5.92438 5.97454 6.04707 6.14305 6.18144 6.25235 6.32544 6.42132 6.51112 6.67641 6.82447 7.11066 7.15803 7.23028 7.27197 7.31940 7.41978 7.47854 7.59980 7.71664 7.88699 8.08660 8.36056 8.72278 9.06331 9.19201 9.24972 10.52888 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.011067 B = 0.010321 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.405678 B = 2712.195255 C = 4948.063322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.532 5.532 3 C 0.048 3.952 4 C -0.119 4.119 5 C -0.143 4.143 6 C -0.090 4.090 7 C 0.004 3.996 8 C -0.178 4.178 9 C -0.116 4.116 10 C -0.154 4.154 11 C 0.083 3.917 12 N -0.592 5.592 13 H 0.393 0.607 14 C -0.096 4.096 15 C 0.018 3.982 16 C -0.407 4.407 17 H 0.080 0.920 18 C 0.053 3.947 19 N -0.837 5.837 20 Si 0.907 3.093 21 H -0.275 1.275 22 H -0.282 1.282 23 H -0.264 1.264 24 C -0.111 4.111 25 C 0.094 3.906 26 H 0.036 0.964 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.191 0.809 38 H 0.271 0.729 39 H 0.091 0.909 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.922 -1.866 -3.504 8.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.253 5.253 3 C -0.080 4.080 4 C -0.157 4.157 5 C -0.161 4.161 6 C -0.092 4.092 7 C 0.002 3.998 8 C -0.199 4.199 9 C -0.135 4.135 10 C -0.176 4.176 11 C -0.028 4.028 12 N -0.193 5.193 13 H 0.226 0.774 14 C -0.220 4.220 15 C 0.013 3.987 16 C -0.440 4.440 17 H 0.098 0.902 18 C -0.156 4.156 19 N -0.468 5.468 20 Si 0.734 3.266 21 H -0.201 1.201 22 H -0.207 1.207 23 H -0.188 1.188 24 C -0.118 4.118 25 C -0.034 4.034 26 H 0.054 0.946 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.117 0.883 37 H 0.208 0.792 38 H 0.082 0.918 39 H 0.109 0.891 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.395 -1.976 -3.859 8.572 hybrid contribution 0.244 0.824 0.852 1.211 sum -7.151 -1.151 -3.007 7.842 Atomic orbital electron populations 1.22411 0.88309 1.01684 1.00612 1.62803 1.07744 1.14104 1.40662 1.22288 1.00699 0.88036 0.96987 1.20997 1.00814 0.99452 0.94454 1.22205 1.02045 0.93880 0.97967 1.20207 1.00106 0.94760 0.94090 1.18180 0.92997 0.95940 0.92641 1.20534 0.99037 1.02255 0.98073 1.20283 0.97005 1.01014 0.95190 1.19821 0.94457 1.02751 1.00587 1.18200 0.88983 1.00431 0.95165 1.41570 1.16006 1.41944 1.19814 0.77395 1.23416 1.01601 1.02558 0.94449 1.18057 0.89395 0.96668 0.94585 1.18924 1.01533 1.20181 1.03372 0.90195 1.25628 0.96206 0.97222 0.96577 1.69457 1.09986 1.38380 1.28984 0.86289 0.77879 0.80471 0.81962 1.20066 1.20743 1.18815 1.19436 0.96233 1.01920 0.94254 1.21022 1.01481 0.95827 0.85039 0.94593 0.92038 0.91874 0.90007 0.90916 0.90639 0.91466 0.87705 0.87903 0.87627 0.88300 0.79238 0.91826 0.89118 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 8.80 60.06 0.53 0.77 16 2 N -0.53 -8.22 5.28 -244.43 -1.29 -9.51 16 3 C 0.05 0.74 6.06 -3.62 -0.02 0.71 16 4 C -0.12 -1.84 5.53 -28.02 -0.16 -2.00 16 5 C -0.14 -2.66 7.45 -36.36 -0.27 -2.93 16 6 C -0.09 -1.73 3.47 -102.94 -0.36 -2.09 16 7 C 0.00 0.08 5.11 -104.85 -0.54 -0.46 16 8 C -0.18 -3.38 9.78 -39.14 -0.38 -3.76 16 9 C -0.12 -2.09 9.99 -39.63 -0.40 -2.49 16 10 C -0.15 -2.98 10.06 -39.31 -0.40 -3.38 16 11 C 0.08 1.87 7.23 -83.91 -0.61 1.27 16 12 N -0.59 -12.97 5.99 -9.81 -0.06 -13.03 16 13 H 0.39 7.08 8.96 -40.82 -0.37 6.72 16 14 C -0.10 -2.44 10.89 -15.61 -0.17 -2.61 16 15 C 0.02 0.48 6.10 -104.84 -0.64 -0.16 16 16 C -0.41 -10.70 8.94 -38.01 -0.34 -11.04 16 17 H 0.08 2.02 5.24 -52.49 -0.28 1.75 16 18 C 0.05 1.35 5.49 -17.33 -0.10 1.25 16 19 N -0.84 -21.73 10.33 55.54 0.57 -21.16 16 20 Si 0.91 19.53 29.56 -169.99 -5.02 14.51 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 24 C -0.11 -2.69 6.19 -104.60 -0.65 -3.34 16 25 C 0.09 1.64 5.65 -5.27 -0.03 1.61 16 26 H 0.04 0.49 5.75 -51.93 -0.30 0.20 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.77 8.10 -51.93 -0.42 0.34 16 29 H 0.08 1.41 8.08 -51.93 -0.42 0.99 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.07 0.92 6.99 -51.93 -0.36 0.56 16 33 H 0.10 2.13 7.98 -52.49 -0.42 1.71 16 34 H 0.10 1.72 8.06 -52.49 -0.42 1.29 16 35 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.19 4.97 5.68 -52.49 -0.30 4.67 16 38 H 0.27 6.56 8.30 -40.82 -0.34 6.22 16 39 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 40 H 0.08 1.28 8.01 -51.93 -0.42 0.87 16 LS Contribution 319.05 15.07 4.81 4.81 Total: -1.00 -27.87 319.05 -10.88 -38.75 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -5.37 Total: 14.29 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: -4.51 Total: -28.65 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: -0.78 Total: -43.70 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.87 -10.88 -38.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241570640.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.211 kcal (2) G-P(sol) polarization free energy of solvation -27.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds