Wall clock time and date at job start Tue Mar 31 2020 06:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46507 * 119.99768 * 2 1 4 4 C 1.39721 * 120.00420 * 180.02562 * 2 1 3 5 5 C 1.39006 * 120.43447 * 359.97438 * 4 2 1 6 6 N 1.31815 * 120.92330 * 179.97438 * 5 4 2 7 7 C 1.31743 * 121.93166 * 0.02562 * 6 5 4 8 8 C 1.39334 * 120.75950 * 0.02562 * 7 6 5 9 9 C 1.48406 * 120.49640 * 179.97438 * 8 7 6 10 10 C 1.39335 * 120.11664 * 179.72427 * 9 8 7 11 11 C 1.38023 * 119.87284 * 179.69836 * 10 9 8 12 12 C 1.38316 * 120.12181 * 0.57968 * 11 10 9 13 13 C 1.50707 * 119.88005 * 179.73890 * 12 11 10 14 14 C 1.50699 * 109.47288 * 269.98223 * 13 12 11 15 15 H 1.08004 * 119.99876 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99939 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00340 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99965 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47165 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47033 * 119.99903 * 18 16 14 21 21 H 1.48498 * 109.47417 * 240.00247 * 18 16 14 22 22 C 1.38315 * 120.24399 * 359.72431 * 12 11 10 23 23 C 1.38024 * 120.12125 * 359.97266 * 22 12 11 24 24 C 1.39070 * 120.43604 * 180.25860 * 4 2 1 25 25 H 1.09007 * 109.46699 * 239.99796 * 1 2 3 26 26 H 1.08997 * 109.47422 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46683 * 120.00464 * 1 2 3 28 28 H 1.08997 * 109.47272 * 270.00171 * 3 2 1 29 29 H 1.09000 * 109.47348 * 30.00129 * 3 2 1 30 30 H 1.09003 * 109.47062 * 150.00433 * 3 2 1 31 31 H 1.08006 * 119.54011 * 359.97438 * 5 4 2 32 32 H 1.08003 * 119.62117 * 180.02562 * 7 6 5 33 33 H 1.07997 * 120.06333 * 0.02562 * 10 9 8 34 34 H 1.07998 * 119.93915 * 180.30640 * 11 10 9 35 35 H 1.09001 * 109.46602 * 29.98176 * 13 12 11 36 36 H 1.08996 * 109.47274 * 149.98037 * 13 12 11 37 37 H 0.96996 * 120.00376 * 179.97438 * 17 16 14 38 38 H 1.07999 * 119.94199 * 179.97438 * 22 12 11 39 39 H 1.08001 * 120.06090 * 180.02562 * 23 22 12 40 40 H 1.08001 * 120.87674 * 0.03620 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1637 -1.2100 -0.0005 5 6 1.4779 -2.4191 -0.0005 6 7 2.1273 -3.5662 -0.0016 7 6 3.4435 -3.6217 -0.0021 8 6 4.2060 -2.4555 -0.0011 9 6 5.6884 -2.5249 -0.0011 10 6 6.4431 -1.3536 -0.0059 11 6 7.8216 -1.4240 0.0004 12 6 8.4538 -2.6542 -0.0007 13 6 9.9592 -2.7246 0.0002 14 6 10.4620 -2.7468 -1.4203 15 1 9.7615 -2.7128 -2.2416 16 6 11.8162 -2.8094 -1.6713 17 7 12.6693 -2.8503 -0.6712 18 14 12.4394 -2.8362 -3.4321 19 1 11.2864 -2.7808 -4.3663 20 1 13.3200 -1.6630 -3.6634 21 1 13.2074 -4.0854 -3.6665 22 6 7.7095 -3.8200 -0.0024 23 6 6.3305 -3.7614 -0.0023 24 6 3.5543 -1.2205 0.0049 25 1 -0.3633 -0.5139 0.8900 26 1 -0.3634 1.0276 0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 2.3791 1.5835 -1.0276 29 1 1.6084 2.0285 0.5138 30 1 3.1499 1.1385 0.5138 31 1 0.3978 -2.4187 0.0003 32 1 3.9373 -4.5823 -0.0034 33 1 5.9505 -0.3926 -0.0092 34 1 8.4076 -0.5168 0.0017 35 1 10.3633 -1.8530 0.5151 36 1 10.2802 -3.6310 0.5134 37 1 13.6220 -2.8947 -0.8479 38 1 8.2082 -4.7779 -0.0036 39 1 5.7503 -4.6723 -0.0032 40 1 4.1155 -0.2977 0.0101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242527189.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:52 Heat of formation + Delta-G solvation = 59.111018 kcal Electronic energy + Delta-G solvation = -20464.781525 eV Core-core repulsion = 17436.986481 eV Total energy + Delta-G solvation = -3027.795044 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.40849 -38.58525 -36.88955 -34.03784 -32.62806 -31.19933 -30.35023 -29.91068 -28.68296 -26.69971 -25.35750 -23.87117 -22.93319 -21.74942 -21.09178 -19.94671 -17.78175 -16.55922 -16.36261 -16.30059 -15.56585 -15.42636 -14.78186 -14.59979 -14.23968 -13.95080 -13.67958 -13.50908 -13.02945 -12.94545 -12.88499 -12.63651 -12.43831 -12.12002 -11.93759 -11.77890 -11.32766 -11.23649 -10.77289 -10.56724 -10.49289 -10.27914 -9.91107 -9.59034 -9.36937 -9.27190 -8.46797 -8.38282 -7.73974 -7.39626 -6.08005 -4.12339 0.86634 1.45516 1.99302 2.32839 2.81530 3.27322 3.35182 3.40357 3.93532 4.37790 4.54074 4.56435 4.64712 4.66053 4.85538 4.96707 5.00806 5.07045 5.20642 5.26772 5.27590 5.33957 5.40676 5.41436 5.48160 5.63269 5.92213 5.94651 5.98360 6.14384 6.35759 6.46272 6.55239 6.66034 6.89949 7.01318 7.09177 7.11282 7.17321 7.45004 7.63130 7.78180 7.87710 8.12179 8.26639 8.93268 9.51946 11.01699 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.028307 B = 0.003125 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.902074 B = 8958.041833 C = 9347.271705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.635 5.635 3 C 0.092 3.908 4 C 0.167 3.833 5 C 0.013 3.987 6 N -0.444 5.444 7 C 0.040 3.960 8 C -0.019 4.019 9 C -0.090 4.090 10 C -0.102 4.102 11 C -0.126 4.126 12 C -0.020 4.020 13 C 0.044 3.956 14 C -0.512 4.512 15 H 0.058 0.942 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.895 3.105 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.125 4.125 23 C -0.100 4.100 24 C -0.159 4.159 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.147 0.853 32 H 0.155 0.845 33 H 0.112 0.888 34 H 0.121 0.879 35 H 0.030 0.970 36 H 0.031 0.969 37 H 0.262 0.738 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.076 6.101 2.692 23.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.348 5.348 3 C -0.052 4.052 4 C 0.064 3.936 5 C -0.149 4.149 6 N -0.150 5.150 7 C -0.120 4.120 8 C -0.022 4.022 9 C -0.091 4.091 10 C -0.120 4.120 11 C -0.144 4.144 12 C -0.020 4.020 13 C 0.007 3.993 14 C -0.550 4.550 15 H 0.076 0.924 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.723 3.277 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.143 4.143 23 C -0.118 4.118 24 C -0.189 4.189 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.164 0.836 32 H 0.172 0.828 33 H 0.130 0.870 34 H 0.139 0.861 35 H 0.048 0.952 36 H 0.049 0.951 37 H 0.072 0.928 38 H 0.140 0.860 39 H 0.136 0.864 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -22.487 5.489 2.731 23.308 hybrid contribution 0.945 0.910 -1.000 1.650 sum -21.542 6.399 1.731 22.539 Atomic orbital electron populations 1.21617 0.79265 1.02527 1.01314 1.46240 1.04980 1.02888 1.80672 1.21694 0.97432 0.84684 1.01358 1.18776 0.91784 0.87117 0.95940 1.22195 0.99698 0.86220 1.06806 1.67424 1.10203 1.28230 1.09163 1.22596 0.88824 0.97954 1.02637 1.19645 0.93446 0.93220 0.95875 1.18383 0.90000 0.94008 1.06714 1.21058 0.94019 0.96750 1.00184 1.21036 0.93444 0.98248 1.01695 1.20840 0.99093 0.91938 0.90089 1.18420 0.84420 0.98534 0.97877 1.21079 0.91607 1.50959 0.91369 0.92355 1.25012 0.96886 0.95118 0.97302 1.69961 1.02287 1.50340 1.30659 0.86476 0.78890 0.77666 0.84680 1.19629 1.20927 1.20883 1.21060 0.92866 0.98890 1.01481 1.21114 0.94704 0.96229 0.99787 1.21161 0.91915 0.98512 1.07263 0.92693 0.90781 0.92665 0.93220 0.91417 0.91239 0.83553 0.82828 0.86980 0.86116 0.95185 0.95123 0.92837 0.85961 0.86422 0.84742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.60 9.41 59.85 0.56 1.17 16 2 N -0.64 -5.86 3.41 -187.45 -0.64 -6.50 16 3 C 0.09 0.67 10.19 59.85 0.61 1.28 16 4 C 0.17 2.01 6.56 -83.67 -0.55 1.46 16 5 C 0.01 0.16 10.48 -17.27 -0.18 -0.02 16 6 N -0.44 -6.39 10.34 -12.80 -0.13 -6.52 16 7 C 0.04 0.57 10.60 -17.18 -0.18 0.39 16 8 C -0.02 -0.28 5.89 -104.78 -0.62 -0.90 16 9 C -0.09 -1.46 5.88 -104.90 -0.62 -2.08 16 10 C -0.10 -1.67 9.44 -39.25 -0.37 -2.04 16 11 C -0.13 -2.39 9.68 -39.63 -0.38 -2.77 16 12 C -0.02 -0.41 5.07 -104.56 -0.53 -0.94 16 13 C 0.04 1.12 5.10 -29.03 -0.15 0.97 16 14 C -0.51 -14.14 9.09 -34.44 -0.31 -14.45 16 15 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 18 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C -0.12 -2.37 9.68 -39.63 -0.38 -2.76 16 23 C -0.10 -1.66 9.44 -39.25 -0.37 -2.03 16 24 C -0.16 -2.08 8.66 -38.75 -0.34 -2.42 16 25 H 0.05 0.32 7.96 -51.93 -0.41 -0.09 16 26 H 0.07 0.32 7.79 -51.93 -0.40 -0.08 16 27 H 0.05 0.33 7.96 -51.93 -0.41 -0.08 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.36 7.92 -51.93 -0.41 -0.06 16 30 H 0.07 0.53 6.23 -51.93 -0.32 0.20 16 31 H 0.15 1.46 6.74 -52.48 -0.35 1.10 16 32 H 0.15 1.97 6.22 -52.48 -0.33 1.65 16 33 H 0.11 1.52 6.27 -52.49 -0.33 1.19 16 34 H 0.12 2.20 8.06 -52.49 -0.42 1.77 16 35 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 36 H 0.03 0.81 8.08 -51.93 -0.42 0.39 16 37 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.12 2.24 8.06 -52.49 -0.42 1.81 16 39 H 0.12 1.62 6.23 -52.49 -0.33 1.29 16 40 H 0.13 1.57 4.52 -52.49 -0.24 1.33 16 LS Contribution 332.86 15.07 5.02 5.02 Total: -1.00 -31.27 332.86 -9.13 -40.40 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -5.19 Total: 0.26 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -3.91 Total: -23.63 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: -0.04 Total: -38.38 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.27 -9.13 -40.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242527189.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.515 kcal (2) G-P(sol) polarization free energy of solvation -31.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds