Wall clock time and date at job start Tue Mar 31 2020 06:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46497 * 119.99954 * 2 1 4 4 C 1.39718 * 119.99687 * 180.02562 * 2 1 3 5 5 C 1.39010 * 120.43484 * 174.56500 * 4 2 1 6 6 N 1.31824 * 120.92151 * 180.30925 * 5 4 2 7 7 C 1.31740 * 121.93136 * 359.71311 * 6 5 4 8 8 C 1.39339 * 120.75974 * 0.02562 * 7 6 5 9 9 C 1.48405 * 120.49518 * 179.97438 * 8 7 6 10 10 C 1.39352 * 120.11531 * 179.74974 * 9 8 7 11 11 C 1.38004 * 119.87390 * 179.72226 * 10 9 8 12 12 C 1.38342 * 120.12044 * 0.54639 * 11 10 9 13 13 C 1.38307 * 120.24279 * 359.72774 * 12 11 10 14 14 C 1.50696 * 119.93983 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47513 * 270.02058 * 14 13 12 16 16 H 1.08006 * 119.99183 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00463 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99793 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00279 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47301 * 59.99628 * 19 17 15 21 21 H 1.48496 * 109.47349 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46958 * 299.99701 * 19 17 15 23 23 C 1.38037 * 120.11819 * 359.97438 * 13 12 11 24 24 C 1.39062 * 120.43820 * 354.33083 * 4 2 1 25 25 H 1.09007 * 109.46817 * 270.00031 * 1 2 3 26 26 H 1.09002 * 109.47073 * 29.98970 * 1 2 3 27 27 H 1.08991 * 109.47202 * 149.99537 * 1 2 3 28 28 H 1.08996 * 109.47234 * 185.06910 * 3 2 1 29 29 H 1.08997 * 109.47612 * 305.07800 * 3 2 1 30 30 H 1.08999 * 109.47098 * 65.07821 * 3 2 1 31 31 H 1.08003 * 119.53609 * 0.02562 * 5 4 2 32 32 H 1.07991 * 119.62100 * 180.02562 * 7 6 5 33 33 H 1.08002 * 120.06600 * 359.97438 * 10 9 8 34 34 H 1.08000 * 119.94362 * 180.25186 * 11 10 9 35 35 H 1.08003 * 119.88216 * 179.70184 * 12 11 10 36 36 H 1.09003 * 109.47237 * 30.02446 * 14 13 12 37 37 H 1.09002 * 109.47293 * 150.01803 * 14 13 12 38 38 H 0.97006 * 120.00118 * 179.97438 * 18 17 15 39 39 H 1.08004 * 120.05945 * 179.97438 * 23 13 12 40 40 H 1.08001 * 120.87450 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1636 -1.2100 -0.0005 5 6 3.5490 -1.2233 -0.1141 6 7 4.2172 -2.3596 -0.1217 7 6 3.6114 -3.5248 -0.0176 8 6 2.2254 -3.5990 0.1053 9 6 1.5491 -4.9149 0.2216 10 6 0.1629 -4.9796 0.3494 11 6 -0.4614 -6.2061 0.4514 12 6 0.2872 -7.3694 0.4383 13 6 1.6637 -7.3107 0.3175 14 6 2.4726 -8.5821 0.3046 15 6 2.8633 -8.9433 1.7145 16 1 2.5562 -8.3151 2.5376 17 6 3.6128 -10.0755 1.9536 18 7 3.9863 -10.8407 0.9513 19 14 4.0965 -10.5236 3.7014 20 1 2.8724 -10.7246 4.5178 21 1 4.8936 -11.7764 3.6887 22 1 4.9075 -9.4262 4.2872 23 6 2.2980 -6.0895 0.2086 24 6 1.4825 -2.4167 0.1174 25 1 -0.3633 0.0000 1.0278 26 1 -0.3633 0.8901 -0.5137 27 1 -0.3633 -0.8899 -0.5139 28 1 3.2657 1.0716 -0.0908 29 1 1.8678 1.8787 -0.8410 30 1 2.0042 1.7999 0.9320 31 1 4.0850 -0.2898 -0.2018 32 1 4.1957 -4.4330 -0.0277 33 1 -0.4221 -4.0719 0.3645 34 1 -1.5360 -6.2578 0.5464 35 1 -0.2050 -8.3270 0.5233 36 1 1.8767 -9.3875 -0.1250 37 1 3.3709 -8.4352 -0.2951 38 1 4.5139 -11.6371 1.1195 39 1 3.3730 -6.0447 0.1146 40 1 0.4068 -2.4391 0.2114 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242527455.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:58 Heat of formation + Delta-G solvation = 63.519261 kcal Electronic energy + Delta-G solvation = -20646.667985 eV Core-core repulsion = 17619.064097 eV Total energy + Delta-G solvation = -3027.603888 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.38397 -38.57913 -36.83716 -33.87280 -32.77675 -31.21104 -30.86017 -29.36367 -28.14928 -27.09830 -25.28725 -23.76429 -22.95938 -22.37508 -20.65496 -19.69221 -17.75831 -16.52823 -16.32499 -16.20963 -15.77882 -15.41095 -14.73817 -14.58526 -14.27424 -14.02086 -13.66815 -13.44068 -13.25159 -12.86888 -12.60805 -12.55687 -12.29952 -12.16114 -11.81436 -11.71882 -11.29386 -11.07410 -10.82381 -10.51180 -10.47007 -10.39621 -9.88819 -9.52790 -9.42310 -9.31615 -8.42454 -8.07761 -7.80895 -7.42291 -6.04708 -4.08762 0.87312 1.50872 2.04536 2.31496 2.84438 3.32885 3.36924 3.40349 3.97124 4.40244 4.43462 4.58343 4.68304 4.84323 4.89078 4.97008 5.00480 5.12245 5.24483 5.28061 5.30628 5.37211 5.40987 5.48194 5.52830 5.59143 5.94987 5.96576 6.04023 6.06866 6.36456 6.49518 6.64589 6.68123 6.91595 7.01295 7.09296 7.12969 7.22635 7.47660 7.64546 7.80444 7.90928 8.18864 8.30273 8.96171 9.55328 11.05186 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.023763 B = 0.003562 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.034384 B = 7859.831351 C = 8493.120590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.636 5.636 3 C 0.091 3.909 4 C 0.164 3.836 5 C 0.013 3.987 6 N -0.442 5.442 7 C 0.048 3.952 8 C -0.026 4.026 9 C -0.061 4.061 10 C -0.132 4.132 11 C -0.124 4.124 12 C -0.114 4.114 13 C -0.033 4.033 14 C 0.047 3.953 15 C -0.514 4.514 16 H 0.057 0.943 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.103 4.103 24 C -0.155 4.155 25 H 0.048 0.952 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.150 0.850 32 H 0.159 0.841 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.030 0.970 37 H 0.030 0.970 38 H 0.263 0.737 39 H 0.124 0.876 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.626 21.384 -3.066 22.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.349 5.349 3 C -0.052 4.052 4 C 0.061 3.939 5 C -0.149 4.149 6 N -0.149 5.149 7 C -0.112 4.112 8 C -0.029 4.029 9 C -0.061 4.061 10 C -0.150 4.150 11 C -0.142 4.142 12 C -0.132 4.132 13 C -0.033 4.033 14 C 0.010 3.990 15 C -0.552 4.552 16 H 0.075 0.925 17 C -0.142 4.142 18 N -0.532 5.532 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.121 4.121 24 C -0.185 4.185 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.167 0.833 32 H 0.177 0.823 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.138 0.862 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.073 0.927 39 H 0.142 0.858 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.700 21.421 -3.192 22.670 hybrid contribution -0.753 -0.274 1.110 1.369 sum -7.452 21.147 -2.082 22.518 Atomic orbital electron populations 1.21614 0.79468 1.02636 1.01235 1.46197 1.04943 1.02812 1.80965 1.21689 0.97632 0.84815 1.01040 1.18777 0.92751 0.86290 0.96109 1.22345 0.89301 0.96959 1.06307 1.67479 1.40013 0.98058 1.09336 1.22748 0.91451 0.95735 1.01233 1.19674 0.94168 0.92591 0.96434 1.18551 0.93211 0.91073 1.03299 1.20877 0.93398 0.97283 1.03437 1.20963 0.99176 0.92558 1.01498 1.21221 0.94107 0.97964 0.99915 1.20654 0.93892 0.96832 0.91898 1.18373 0.94386 0.88351 0.97843 1.21011 1.33479 1.08716 0.91972 0.92493 1.24999 0.95831 0.96208 0.97191 1.69944 1.37449 1.15118 1.30733 0.86598 0.78652 0.77777 0.84686 1.20184 1.21221 1.20091 1.21175 0.99750 0.91049 1.00102 1.21123 1.00238 0.90156 1.06953 0.93347 0.91496 0.91360 0.90355 0.92548 0.92925 0.83264 0.82347 0.87106 0.86779 0.86218 0.95202 0.95159 0.92746 0.85840 0.84839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 10.13 59.85 0.61 1.29 16 2 N -0.64 -6.05 3.41 -187.46 -0.64 -6.69 16 3 C 0.09 0.61 10.63 59.85 0.64 1.25 16 4 C 0.16 2.04 6.55 -83.67 -0.55 1.49 16 5 C 0.01 0.17 10.48 -17.27 -0.18 -0.01 16 6 N -0.44 -6.95 10.34 -12.80 -0.13 -7.08 16 7 C 0.05 0.77 10.60 -17.18 -0.18 0.59 16 8 C -0.03 -0.41 5.89 -104.78 -0.62 -1.03 16 9 C -0.06 -1.04 5.88 -104.90 -0.62 -1.65 16 10 C -0.13 -2.05 9.44 -39.25 -0.37 -2.42 16 11 C -0.12 -1.98 10.03 -39.63 -0.40 -2.38 16 12 C -0.11 -2.16 9.69 -39.52 -0.38 -2.55 16 13 C -0.03 -0.70 5.06 -104.67 -0.53 -1.23 16 14 C 0.05 1.20 5.10 -29.04 -0.15 1.05 16 15 C -0.51 -14.29 9.09 -34.44 -0.31 -14.60 16 16 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 19 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C -0.10 -2.00 9.09 -39.26 -0.36 -2.36 16 24 C -0.15 -2.09 8.62 -38.75 -0.33 -2.42 16 25 H 0.05 0.34 8.14 -51.92 -0.42 -0.09 16 26 H 0.07 0.36 8.07 -51.93 -0.42 -0.06 16 27 H 0.07 0.51 6.49 -51.93 -0.34 0.17 16 28 H 0.08 0.50 5.33 -51.93 -0.28 0.22 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.15 1.55 5.74 -52.48 -0.30 1.25 16 32 H 0.16 2.50 6.22 -52.49 -0.33 2.18 16 33 H 0.11 1.40 6.27 -52.49 -0.33 1.07 16 34 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.12 2.19 8.06 -52.48 -0.42 1.77 16 36 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 37 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.12 2.34 6.23 -52.48 -0.33 2.01 16 40 H 0.13 1.54 4.69 -52.49 -0.25 1.30 16 LS Contribution 331.45 15.07 4.99 4.99 Total: -1.00 -31.41 331.45 -8.95 -40.37 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.06 Total: 0.83 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: -3.83 Total: -23.41 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: -0.04 Total: -39.32 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.41 -8.95 -40.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242527455.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.886 kcal (2) G-P(sol) polarization free energy of solvation -31.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds