Wall clock time and date at job start Tue Mar 31 2020 06:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46497 * 119.99954 * 2 1 4 4 C 1.39718 * 119.99687 * 180.02562 * 2 1 3 5 5 C 1.39010 * 120.43484 * 174.56500 * 4 2 1 6 6 N 1.31824 * 120.92151 * 180.30925 * 5 4 2 7 7 C 1.31740 * 121.93136 * 359.71311 * 6 5 4 8 8 C 1.39339 * 120.75974 * 0.02562 * 7 6 5 9 9 C 1.48405 * 120.49518 * 179.97438 * 8 7 6 10 10 C 1.39352 * 120.11531 * 179.74974 * 9 8 7 11 11 C 1.38004 * 119.87390 * 179.72226 * 10 9 8 12 12 C 1.38342 * 120.12044 * 0.54639 * 11 10 9 13 13 C 1.38307 * 120.24279 * 359.72774 * 12 11 10 14 14 C 1.50696 * 119.93983 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47513 * 270.02058 * 14 13 12 16 16 H 1.08006 * 119.99183 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00463 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99793 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00279 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47301 * 59.99628 * 19 17 15 21 21 H 1.48496 * 109.47349 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46958 * 299.99701 * 19 17 15 23 23 C 1.38037 * 120.11819 * 359.97438 * 13 12 11 24 24 C 1.39062 * 120.43820 * 354.33083 * 4 2 1 25 25 H 1.09007 * 109.46817 * 270.00031 * 1 2 3 26 26 H 1.09002 * 109.47073 * 29.98970 * 1 2 3 27 27 H 1.08991 * 109.47202 * 149.99537 * 1 2 3 28 28 H 1.08996 * 109.47234 * 185.06910 * 3 2 1 29 29 H 1.08997 * 109.47612 * 305.07800 * 3 2 1 30 30 H 1.08999 * 109.47098 * 65.07821 * 3 2 1 31 31 H 1.08003 * 119.53609 * 0.02562 * 5 4 2 32 32 H 1.07991 * 119.62100 * 180.02562 * 7 6 5 33 33 H 1.08002 * 120.06600 * 359.97438 * 10 9 8 34 34 H 1.08000 * 119.94362 * 180.25186 * 11 10 9 35 35 H 1.08003 * 119.88216 * 179.70184 * 12 11 10 36 36 H 1.09003 * 109.47237 * 30.02446 * 14 13 12 37 37 H 1.09002 * 109.47293 * 150.01803 * 14 13 12 38 38 H 0.97006 * 120.00118 * 179.97438 * 18 17 15 39 39 H 1.08004 * 120.05945 * 179.97438 * 23 13 12 40 40 H 1.08001 * 120.87450 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1636 -1.2100 -0.0005 5 6 3.5490 -1.2233 -0.1141 6 7 4.2172 -2.3596 -0.1217 7 6 3.6114 -3.5248 -0.0176 8 6 2.2254 -3.5990 0.1053 9 6 1.5491 -4.9149 0.2216 10 6 0.1629 -4.9796 0.3494 11 6 -0.4614 -6.2061 0.4514 12 6 0.2872 -7.3694 0.4383 13 6 1.6637 -7.3107 0.3175 14 6 2.4726 -8.5821 0.3046 15 6 2.8633 -8.9433 1.7145 16 1 2.5562 -8.3151 2.5376 17 6 3.6128 -10.0755 1.9536 18 7 3.9863 -10.8407 0.9513 19 14 4.0965 -10.5236 3.7014 20 1 2.8724 -10.7246 4.5178 21 1 4.8936 -11.7764 3.6887 22 1 4.9075 -9.4262 4.2872 23 6 2.2980 -6.0895 0.2086 24 6 1.4825 -2.4167 0.1174 25 1 -0.3633 0.0000 1.0278 26 1 -0.3633 0.8901 -0.5137 27 1 -0.3633 -0.8899 -0.5139 28 1 3.2657 1.0716 -0.0908 29 1 1.8678 1.8787 -0.8410 30 1 2.0042 1.7999 0.9320 31 1 4.0850 -0.2898 -0.2018 32 1 4.1957 -4.4330 -0.0277 33 1 -0.4221 -4.0719 0.3645 34 1 -1.5360 -6.2578 0.5464 35 1 -0.2050 -8.3270 0.5233 36 1 1.8767 -9.3875 -0.1250 37 1 3.3709 -8.4352 -0.2951 38 1 4.5139 -11.6371 1.1195 39 1 3.3730 -6.0447 0.1146 40 1 0.4068 -2.4391 0.2114 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242527455.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:57 Heat of formation + Delta-G solvation = 46.411781 kcal Electronic energy + Delta-G solvation = -20647.409821 eV Core-core repulsion = 17619.064097 eV Total energy + Delta-G solvation = -3028.345724 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.46167 -39.92108 -37.68657 -35.65178 -34.30803 -32.81458 -31.92764 -30.34690 -29.08666 -28.82070 -26.22222 -25.33727 -24.37650 -23.57355 -21.85279 -21.04367 -18.80186 -18.49027 -17.54630 -17.23884 -17.09182 -16.48769 -16.08304 -15.76516 -15.66408 -15.11295 -14.74605 -14.55623 -14.49271 -14.37867 -13.97083 -13.43637 -13.37366 -13.32149 -13.11819 -12.99445 -12.78681 -12.60794 -12.44712 -12.28286 -11.99647 -11.64435 -11.36770 -11.33600 -10.94083 -10.61100 -10.42347 -9.53684 -9.11878 -8.32576 -8.20902 -6.34249 -0.32198 0.44752 0.63477 1.01396 1.39042 1.41811 1.50049 2.13130 2.39172 2.79420 3.09861 3.20108 3.44304 3.73141 3.83670 3.96122 4.06793 4.16686 4.22288 4.27069 4.37743 4.53917 4.56287 4.60474 4.68160 4.73373 4.79691 4.88411 4.92317 5.03687 5.04595 5.19378 5.22456 5.34904 5.38095 5.51998 5.64818 5.69918 5.76353 6.05813 6.10405 6.21765 6.24641 6.33422 6.78035 7.09816 7.34281 8.88375 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.023763 B = 0.003562 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.034384 B = 7859.831351 C = 8493.120590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.633 5.633 3 C 0.083 3.917 4 C 0.171 3.829 5 C 0.009 3.991 6 N -0.464 5.464 7 C 0.020 3.980 8 C -0.041 4.041 9 C -0.056 4.056 10 C -0.120 4.120 11 C -0.110 4.110 12 C -0.130 4.130 13 C -0.063 4.063 14 C 0.056 3.944 15 C -0.530 4.530 16 H 0.053 0.947 17 C 0.005 3.995 18 N -0.930 5.930 19 Si 0.964 3.036 20 H -0.266 1.266 21 H -0.279 1.279 22 H -0.270 1.270 23 C -0.122 4.122 24 C -0.154 4.154 25 H 0.055 0.945 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.177 0.823 32 H 0.143 0.857 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.118 0.882 36 H 0.006 0.994 37 H 0.001 0.999 38 H 0.266 0.734 39 H 0.110 0.890 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.932 24.809 -2.037 26.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.344 5.344 3 C -0.059 4.059 4 C 0.065 3.935 5 C -0.154 4.154 6 N -0.171 5.171 7 C -0.138 4.138 8 C -0.043 4.043 9 C -0.057 4.057 10 C -0.138 4.138 11 C -0.128 4.128 12 C -0.148 4.148 13 C -0.063 4.063 14 C 0.020 3.980 15 C -0.568 4.568 16 H 0.072 0.928 17 C -0.193 4.193 18 N -0.569 5.569 19 Si 0.788 3.212 20 H -0.191 1.191 21 H -0.204 1.204 22 H -0.195 1.195 23 C -0.140 4.140 24 C -0.184 4.184 25 H 0.074 0.926 26 H 0.108 0.892 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.193 0.807 32 H 0.160 0.840 33 H 0.170 0.830 34 H 0.174 0.826 35 H 0.136 0.864 36 H 0.025 0.975 37 H 0.019 0.981 38 H 0.075 0.925 39 H 0.128 0.872 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -9.032 24.876 -2.165 26.553 hybrid contribution -0.082 -1.071 0.724 1.296 sum -9.114 23.804 -1.441 25.530 Atomic orbital electron populations 1.21844 0.77911 1.03898 1.02096 1.46533 1.06106 1.02497 1.79293 1.21923 0.97584 0.83819 1.02590 1.18832 0.92625 0.87365 0.94637 1.22841 0.90219 0.97035 1.05264 1.67441 1.40930 0.98603 1.10153 1.22604 0.92064 0.95731 1.03441 1.19586 0.93974 0.92761 0.97994 1.18717 0.94129 0.90760 1.02090 1.21344 0.92700 0.98776 1.00963 1.21337 1.00959 0.91254 0.99221 1.21289 0.93133 0.99504 1.00843 1.20319 0.94942 0.95457 0.95603 1.18100 0.93502 0.90136 0.96308 1.21339 1.33596 1.08878 0.92957 0.92823 1.25916 0.95679 0.96068 1.01648 1.70072 1.38180 1.15636 1.33049 0.85511 0.78641 0.77651 0.79351 1.19062 1.20446 1.19510 1.21106 0.99555 0.91707 1.01620 1.21298 1.01221 0.89494 1.06422 0.92599 0.89177 0.91281 0.90268 0.90613 0.91602 0.80655 0.83958 0.82950 0.82631 0.86434 0.97550 0.98084 0.92526 0.87181 0.82472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 10.13 127.77 1.29 2.14 16 2 N -0.63 -9.50 3.41 -746.98 -2.55 -12.05 16 3 C 0.08 0.78 10.63 127.77 1.36 2.13 16 4 C 0.17 3.78 6.55 38.27 0.25 4.03 16 5 C 0.01 0.23 10.48 84.88 0.89 1.12 16 6 N -0.46 -14.67 10.34 -194.42 -2.01 -16.68 16 7 C 0.02 0.67 10.60 84.97 0.90 1.57 16 8 C -0.04 -1.25 5.89 -19.96 -0.12 -1.37 16 9 C -0.06 -1.91 5.88 -20.04 -0.12 -2.02 16 10 C -0.12 -3.38 9.44 22.48 0.21 -3.17 16 11 C -0.11 -3.23 10.03 22.24 0.22 -3.01 16 12 C -0.13 -4.97 9.69 22.31 0.22 -4.75 16 13 C -0.06 -2.86 5.06 -19.90 -0.10 -2.96 16 14 C 0.06 3.10 5.10 29.10 0.15 3.25 16 15 C -0.53 -30.95 9.09 25.60 0.23 -30.72 16 16 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16 17 C 0.01 0.30 5.46 84.65 0.46 0.76 16 18 N -0.93 -56.96 13.29 21.45 0.28 -56.68 16 19 Si 0.96 45.16 29.54 68.60 2.03 47.18 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 22 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 23 C -0.12 -5.03 9.09 22.48 0.20 -4.83 16 24 C -0.15 -3.74 8.62 22.81 0.20 -3.54 16 25 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 26 H 0.09 0.52 8.07 -2.39 -0.02 0.50 16 27 H 0.07 0.70 6.49 -2.39 -0.02 0.69 16 28 H 0.08 0.73 5.33 -2.39 -0.01 0.72 16 29 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.18 3.20 5.74 -2.91 -0.02 3.18 16 32 H 0.14 5.02 6.22 -2.92 -0.02 5.00 16 33 H 0.15 3.02 6.27 -2.91 -0.02 3.00 16 34 H 0.16 3.30 8.06 -2.91 -0.02 3.27 16 35 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 36 H 0.01 0.36 8.08 -2.39 -0.02 0.34 16 37 H 0.00 0.05 8.08 -2.39 -0.02 0.03 16 38 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 39 H 0.11 4.67 6.23 -2.91 -0.02 4.65 16 40 H 0.16 2.92 4.69 -2.91 -0.01 2.91 16 Total: -1.00 -71.74 331.45 5.06 -66.69 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 1.05 Total: 12.91 kcal Atomic # 6 Polarization: -47.63 SS G_CDS: 6.25 Total: -41.37 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -4.27 Total: -85.41 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -71.74 5.06 -66.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242527455.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.098 kcal (2) G-P(sol) polarization free energy of solvation -71.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds