Wall clock time and date at job start Tue Mar 31 2020 05:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47081 * 2 1 4 4 C 1.53000 * 109.46965 * 240.00008 * 2 1 3 5 5 C 1.50697 * 109.46935 * 120.00153 * 2 1 3 6 6 C 1.37960 * 119.55225 * 75.30194 * 5 2 1 7 7 C 1.39969 * 118.99269 * 180.22637 * 6 5 2 8 8 C 1.48023 * 120.92770 * 179.75214 * 7 6 5 9 9 C 1.40230 * 120.34314 * 179.72525 * 8 7 6 10 10 C 1.36735 * 118.59960 * 179.97438 * 9 8 7 11 11 C 1.40838 * 119.24953 * 359.97438 * 10 9 8 12 12 C 1.41034 * 119.68511 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99529 * 0.02562 * 12 11 10 14 14 C 1.40141 * 120.00743 * 179.97438 * 12 11 10 15 15 N 1.30692 * 119.99546 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00738 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46813 * 60.00015 * 16 14 12 18 18 H 1.48494 * 109.47510 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47289 * 300.00791 * 16 14 12 20 20 N 1.33774 * 120.63669 * 359.97438 * 11 10 9 21 21 C 1.31199 * 121.50465 * 0.02562 * 20 11 10 22 22 C 1.40017 * 118.14711 * 359.48302 * 7 6 5 23 23 C 1.37918 * 118.98746 * 0.26750 * 22 7 6 24 24 N 1.31930 * 119.54714 * 254.99889 * 5 2 1 25 25 H 1.09001 * 109.47189 * 300.00361 * 1 2 3 26 26 H 1.08997 * 109.47042 * 59.99840 * 1 2 3 27 27 H 1.09001 * 109.47245 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.46736 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47173 * 300.00531 * 3 2 1 30 30 H 1.08997 * 109.46949 * 59.99932 * 3 2 1 31 31 H 1.09001 * 109.47003 * 299.99982 * 4 2 1 32 32 H 1.08997 * 109.47116 * 60.00197 * 4 2 1 33 33 H 1.09006 * 109.46640 * 179.97438 * 4 2 1 34 34 H 1.08001 * 120.50143 * 0.02562 * 6 5 2 35 35 H 1.07998 * 120.69732 * 0.24695 * 9 8 7 36 36 H 1.07997 * 120.37134 * 179.97438 * 10 9 8 37 37 H 0.97003 * 119.99913 * 179.97438 * 15 14 12 38 38 H 1.08002 * 119.65118 * 179.97438 * 21 20 11 39 39 H 1.07999 * 120.50515 * 180.25613 * 22 7 6 40 40 H 1.08004 * 119.54519 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2304 6 6 1.9720 -2.0873 1.2934 7 6 2.4374 -2.7348 2.4438 8 6 2.3879 -4.2097 2.5593 9 6 2.8628 -4.8461 3.7151 10 6 2.7995 -6.2102 3.7841 11 6 2.2621 -6.9299 2.6993 12 6 2.1919 -8.3372 2.7610 13 1 2.5490 -8.8577 3.6374 14 6 1.6580 -9.0601 1.6856 15 7 1.2256 -8.4301 0.6254 16 14 1.5644 -10.9239 1.7676 17 1 0.7236 -11.3268 2.9234 18 1 0.9648 -11.4451 0.5131 19 1 2.9310 -11.4814 1.9315 20 7 1.8167 -6.2916 1.6114 21 6 1.8643 -4.9839 1.5162 22 6 2.9563 -1.9489 3.4799 23 6 2.9832 -0.5782 3.3300 24 7 2.5292 -0.0076 2.2302 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7208 -1.2494 34 1 1.5688 -2.6566 0.4690 35 1 3.2659 -4.2706 4.5353 36 1 3.1575 -6.7298 4.6606 37 1 0.8564 -8.9304 -0.1191 38 1 1.4967 -4.4994 0.6237 39 1 3.3296 -2.4091 4.3828 40 1 3.3811 0.0367 4.1237 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244020137.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:41 Heat of formation + Delta-G solvation = 44.614043 kcal Electronic energy + Delta-G solvation = -21073.800663 eV Core-core repulsion = 18045.376983 eV Total energy + Delta-G solvation = -3028.423680 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.01392 -38.27916 -36.32136 -34.15430 -32.55803 -30.94614 -29.83254 -29.37232 -27.21313 -27.14142 -25.89125 -23.48415 -22.95145 -21.46266 -20.85433 -18.83672 -17.76785 -16.49525 -15.87537 -15.51989 -15.10186 -14.37969 -14.31210 -14.19900 -13.98262 -13.53426 -13.26813 -13.10339 -12.69343 -12.43943 -12.36069 -12.07192 -12.00917 -11.53704 -11.45389 -11.38089 -11.19432 -11.11470 -10.82752 -10.82488 -10.71466 -10.44766 -10.15822 -9.96422 -9.24232 -8.89666 -8.48201 -8.40780 -7.78600 -7.47815 -6.68594 -4.75752 1.52862 1.67597 2.72467 2.93691 2.94133 2.95378 3.13992 3.73088 4.29173 4.51032 4.62477 4.88572 5.16139 5.21333 5.39135 5.48735 5.60734 5.65035 5.70872 5.71737 5.79335 5.89071 5.91462 5.92670 5.98607 6.03048 6.07859 6.17205 6.28333 6.36217 6.41980 6.49639 6.51586 6.59397 6.70734 6.83524 6.88663 7.16342 7.26380 7.43889 7.60464 7.79058 7.94715 8.34665 8.54657 8.64157 9.84875 10.00857 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.026616 B = 0.003834 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.747379 B = 7302.027108 C = 8162.711236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.018 4.018 3 C -0.123 4.123 4 C -0.141 4.141 5 C 0.143 3.857 6 C -0.196 4.196 7 C 0.075 3.925 8 C -0.288 4.288 9 C -0.030 4.030 10 C -0.272 4.272 11 C 0.251 3.749 12 C -0.400 4.400 13 H 0.089 0.911 14 C 0.062 3.938 15 N -0.695 5.695 16 Si 0.914 3.086 17 H -0.262 1.262 18 H -0.274 1.274 19 H -0.262 1.262 20 N -0.489 5.489 21 C 0.166 3.834 22 C -0.210 4.210 23 C 0.102 3.898 24 N -0.515 5.515 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.128 0.872 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.280 0.720 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.021 9.403 -1.291 9.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.019 4.019 3 C -0.180 4.180 4 C -0.198 4.198 5 C 0.006 3.994 6 C -0.216 4.216 7 C 0.066 3.934 8 C -0.293 4.293 9 C -0.053 4.053 10 C -0.294 4.294 11 C 0.129 3.871 12 C -0.430 4.430 13 H 0.107 0.893 14 C -0.167 4.167 15 N -0.314 5.314 16 Si 0.737 3.263 17 H -0.186 1.186 18 H -0.199 1.199 19 H -0.186 1.186 20 N -0.200 5.200 21 C -0.005 4.005 22 C -0.230 4.230 23 C -0.054 4.054 24 N -0.225 5.225 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.146 0.854 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.091 0.909 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.377 9.689 -2.223 9.948 hybrid contribution 0.359 -1.277 0.982 1.650 sum -0.019 8.412 -1.241 8.503 Atomic orbital electron populations 1.21854 0.93596 1.02234 1.01691 1.19427 0.95513 0.95603 0.91311 1.21630 1.00993 0.94295 1.01086 1.21937 1.01285 1.00590 0.96033 1.20798 0.94494 0.90333 0.93774 1.21848 1.05635 0.94693 0.99438 1.19175 0.89459 0.93233 0.91499 1.18950 1.19974 0.90306 1.00110 1.20655 0.95063 0.94293 0.95264 1.21443 1.12495 0.93985 1.01483 1.18688 0.87688 0.93774 0.86979 1.19853 1.30980 0.90562 1.01561 0.89255 1.26235 0.94078 1.01534 0.94821 1.70092 1.20683 1.37707 1.02913 0.86263 0.79907 0.81133 0.78977 1.18611 1.19863 1.18616 1.68820 1.20177 1.06671 1.24341 1.22755 0.91686 0.91001 0.95025 1.22055 1.05639 0.94735 1.00588 1.22372 0.95926 0.92328 0.94735 1.67332 1.13243 1.40797 1.01163 0.92609 0.92268 0.92266 0.92830 0.93460 0.91863 0.91950 0.92264 0.92542 0.85445 0.88218 0.87972 0.90899 0.85995 0.85805 0.83971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.41 37.16 0.31 -1.34 16 2 C -0.02 -0.24 0.87 -155.66 -0.14 -0.37 16 3 C -0.12 -1.51 7.81 37.16 0.29 -1.22 16 4 C -0.14 -1.71 8.08 37.16 0.30 -1.41 16 5 C 0.14 2.34 5.56 -82.65 -0.46 1.88 16 6 C -0.20 -3.49 8.48 -39.04 -0.33 -3.82 16 7 C 0.07 1.45 5.92 -104.57 -0.62 0.83 16 8 C -0.29 -6.30 5.92 -104.45 -0.62 -6.92 16 9 C -0.03 -0.64 9.49 -39.38 -0.37 -1.01 16 10 C -0.27 -6.34 9.77 -39.14 -0.38 -6.72 16 11 C 0.25 6.52 6.55 -84.98 -0.56 5.96 16 12 C -0.40 -10.01 9.12 -37.81 -0.34 -10.36 16 13 H 0.09 2.05 7.85 -52.48 -0.41 1.64 16 14 C 0.06 1.46 5.50 -17.32 -0.10 1.36 16 15 N -0.69 -17.32 11.44 55.56 0.64 -16.68 16 16 Si 0.91 17.19 29.56 -169.99 -5.02 12.17 16 17 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 18 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 19 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 20 N -0.49 -12.87 7.84 -10.85 -0.09 -12.96 16 21 C 0.17 3.89 10.62 -17.14 -0.18 3.71 16 22 C -0.21 -3.63 9.52 -39.03 -0.37 -4.00 16 23 C 0.10 1.63 11.17 -17.62 -0.20 1.43 16 24 N -0.51 -8.67 9.00 -9.57 -0.09 -8.75 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.82 7.85 -51.93 -0.41 0.41 16 31 H 0.06 0.78 6.69 -51.93 -0.35 0.43 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.13 2.16 5.00 -52.49 -0.26 1.90 16 35 H 0.10 1.86 6.39 -52.49 -0.34 1.53 16 36 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 37 H 0.28 6.27 8.29 -40.82 -0.34 5.93 16 38 H 0.12 2.58 6.30 -52.49 -0.33 2.25 16 39 H 0.12 1.96 6.39 -52.49 -0.34 1.62 16 40 H 0.14 1.82 8.06 -52.48 -0.42 1.40 16 LS Contribution 329.75 15.07 4.97 4.97 Total: -1.00 -27.66 329.75 -8.72 -36.38 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -5.37 Total: 6.86 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: -3.76 Total: -21.99 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.46 Total: -38.39 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -5.02 Total: 12.17 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.66 -8.72 -36.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244020137.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.997 kcal (2) G-P(sol) polarization free energy of solvation -27.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds