Wall clock time and date at job start Tue Mar 31 2020 05:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47165 * 2 1 4 4 C 1.53003 * 109.46988 * 240.00388 * 2 1 3 5 5 C 1.50694 * 109.47214 * 120.00213 * 2 1 3 6 6 C 1.38006 * 119.56084 * 75.02346 * 5 2 1 7 7 C 1.39742 * 119.01878 * 179.72103 * 6 5 2 8 8 C 1.48393 * 120.90087 * 180.27298 * 7 6 5 9 9 C 1.39710 * 120.41110 * 359.97358 * 8 7 6 10 10 N 1.31913 * 121.14657 * 179.76659 * 9 8 7 11 11 C 1.31526 * 122.12505 * 0.50204 * 10 9 8 12 12 C 1.40766 * 120.66558 * 359.76641 * 11 10 9 13 13 C 1.41449 * 120.60263 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99818 * 155.58129 * 13 12 11 15 15 C 1.39934 * 119.99684 * 335.58140 * 13 12 11 16 16 N 1.30829 * 120.00399 * 342.35323 * 15 13 12 17 17 Si 1.86808 * 119.99703 * 162.35909 * 15 13 12 18 18 H 1.48497 * 109.46922 * 94.67045 * 17 15 13 19 19 H 1.48496 * 109.46790 * 214.67307 * 17 15 13 20 20 H 1.48498 * 109.46818 * 334.67099 * 17 15 13 21 21 C 1.39152 * 120.41134 * 180.25115 * 8 7 6 22 22 C 1.39775 * 118.19088 * 0.51740 * 7 6 5 23 23 C 1.37958 * 119.02388 * 359.48138 * 22 7 6 24 24 N 1.31909 * 119.56129 * 254.99672 * 5 2 1 25 25 H 1.08998 * 109.47043 * 299.99588 * 1 2 3 26 26 H 1.09006 * 109.46893 * 59.99955 * 1 2 3 27 27 H 1.09001 * 109.46743 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47531 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47285 * 300.00438 * 3 2 1 30 30 H 1.09006 * 109.46684 * 59.99941 * 3 2 1 31 31 H 1.08992 * 109.47458 * 299.99559 * 4 2 1 32 32 H 1.08996 * 109.47522 * 60.00076 * 4 2 1 33 33 H 1.09004 * 109.47065 * 179.97438 * 4 2 1 34 34 H 1.07994 * 120.49032 * 0.02562 * 6 5 2 35 35 H 1.07991 * 119.42681 * 359.97438 * 9 8 7 36 36 H 1.07995 * 119.66872 * 179.74980 * 11 10 9 37 37 H 0.96997 * 120.00106 * 179.97438 * 16 15 13 38 38 H 1.08002 * 120.95520 * 359.97438 * 21 8 7 39 39 H 1.08002 * 120.48077 * 179.75594 * 22 7 6 40 40 H 1.07994 * 119.55787 * 180.27196 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2304 6 6 1.9668 -2.0874 1.2960 7 6 2.4412 -2.7349 2.4398 8 6 2.3966 -4.2139 2.5522 9 6 1.8763 -4.9868 1.5111 10 7 1.8337 -6.3026 1.5937 11 6 2.2652 -6.9512 2.6534 12 6 2.8008 -6.2543 3.7529 13 6 3.2640 -6.9532 4.8922 14 1 4.0048 -6.5040 5.5370 15 6 2.7622 -8.2266 5.1836 16 7 1.6462 -8.6315 4.6341 17 14 3.6861 -9.3482 6.3576 18 1 3.1312 -9.1966 7.7266 19 1 3.5363 -10.7580 5.9160 20 1 5.1250 -8.9814 6.3632 21 6 2.8670 -4.8478 3.6981 22 6 2.9542 -1.9512 3.4774 23 6 2.9824 -0.5799 3.3293 24 7 2.5293 -0.0079 2.2301 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7488 -1.2494 32 1 1.6767 -0.2074 -2.1393 33 1 3.1300 -0.7208 -1.2496 34 1 1.5595 -2.6564 0.4734 35 1 1.5056 -4.4987 0.6220 36 1 2.2078 -8.0293 2.6804 37 1 1.2986 -9.5143 4.8359 38 1 3.2714 -4.2782 4.5218 39 1 3.3271 -2.4128 4.3797 40 1 3.3810 0.0336 4.1237 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244020167.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:47 Heat of formation + Delta-G solvation = 36.331875 kcal Electronic energy + Delta-G solvation = -21052.979361 eV Core-core repulsion = 18024.196540 eV Total energy + Delta-G solvation = -3028.782822 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.27580 -38.37805 -36.48299 -34.25196 -33.11418 -30.98978 -30.07800 -28.98898 -27.27413 -27.17111 -25.81441 -23.77501 -23.26297 -21.44220 -20.93888 -19.09462 -17.49441 -16.47573 -16.02451 -15.64193 -15.32220 -14.75924 -14.44483 -14.43342 -13.97081 -13.69514 -13.41599 -13.29115 -12.80424 -12.50662 -12.24507 -12.16562 -12.00195 -11.65724 -11.63946 -11.39309 -11.32447 -11.04276 -10.97968 -10.94481 -10.82397 -10.60697 -10.25562 -9.91127 -9.50701 -9.12723 -8.66963 -8.28837 -8.00207 -7.46460 -7.02315 -4.62217 1.26866 1.45311 2.59528 2.90113 2.96839 3.00376 3.08438 3.77009 4.15070 4.33118 4.51217 4.72154 5.02717 5.05480 5.19459 5.23695 5.41187 5.48500 5.53422 5.59996 5.67668 5.78179 5.79112 5.85482 5.88177 5.92737 6.01519 6.10802 6.14039 6.29487 6.30955 6.36169 6.44287 6.48432 6.56636 6.92959 6.96734 7.02153 7.13874 7.43421 7.57840 7.89826 8.16963 8.29861 8.52760 8.57708 9.54653 9.94794 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.033138 B = 0.003658 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.737711 B = 7651.814887 C = 8236.975311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.018 4.018 3 C -0.124 4.124 4 C -0.142 4.142 5 C 0.136 3.864 6 C -0.169 4.169 7 C 0.037 3.963 8 C -0.093 4.093 9 C -0.018 4.018 10 N -0.477 5.477 11 C 0.055 3.945 12 C 0.061 3.939 13 C -0.450 4.450 14 H 0.083 0.917 15 C 0.075 3.925 16 N -0.787 5.787 17 Si 0.914 3.086 18 H -0.269 1.269 19 H -0.273 1.273 20 H -0.259 1.259 21 C -0.174 4.174 22 C -0.178 4.178 23 C 0.097 3.903 24 N -0.495 5.495 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.134 0.866 35 H 0.122 0.878 36 H 0.153 0.847 37 H 0.287 0.713 38 H 0.107 0.893 39 H 0.134 0.866 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.453 11.420 -4.615 12.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.019 4.019 3 C -0.181 4.181 4 C -0.199 4.199 5 C -0.001 4.001 6 C -0.188 4.188 7 C 0.028 3.972 8 C -0.095 4.095 9 C -0.173 4.173 10 N -0.185 5.185 11 C -0.109 4.109 12 C 0.056 3.944 13 C -0.480 4.480 14 H 0.101 0.899 15 C -0.145 4.145 16 N -0.412 5.412 17 Si 0.738 3.262 18 H -0.194 1.194 19 H -0.197 1.197 20 H -0.182 1.182 21 C -0.199 4.199 22 C -0.198 4.198 23 C -0.059 4.059 24 N -0.205 5.205 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.151 0.849 35 H 0.139 0.861 36 H 0.170 0.830 37 H 0.098 0.902 38 H 0.125 0.875 39 H 0.152 0.848 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.031 11.702 -5.395 12.886 hybrid contribution 0.639 -1.091 1.572 2.017 sum 0.608 10.610 -3.824 11.295 Atomic orbital electron populations 1.21868 0.93413 1.02293 1.01909 1.19444 0.95635 0.95719 0.91055 1.21645 1.01062 0.94133 1.01292 1.21946 1.01360 1.00542 0.96085 1.20914 0.94884 0.90275 0.94060 1.21967 1.02879 0.94854 0.99121 1.19365 0.91962 0.93471 0.92385 1.19238 1.03231 0.89983 0.97093 1.21844 1.07427 0.89852 0.98159 1.67173 1.14811 1.09336 1.27143 1.23148 0.99830 0.99978 0.87941 1.18486 0.90938 0.91088 0.93881 1.19543 1.20700 0.99764 1.07978 0.89889 1.25990 0.93769 0.98323 0.96382 1.69754 1.15234 1.19556 1.36614 0.86193 0.80996 0.79041 0.80003 1.19362 1.19731 1.18227 1.21424 1.07058 0.94370 0.97062 1.22243 1.02487 0.94808 1.00286 1.22519 0.96116 0.92327 0.94899 1.67362 1.11367 1.40903 1.00850 0.92485 0.92081 0.92260 0.92740 0.93259 0.91777 0.91991 0.92056 0.92449 0.84867 0.86083 0.83015 0.90200 0.87457 0.84789 0.83243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.40 37.16 0.31 -1.20 16 2 C -0.02 -0.21 0.87 -155.66 -0.14 -0.35 16 3 C -0.12 -1.39 7.80 37.16 0.29 -1.10 16 4 C -0.14 -1.54 8.08 37.16 0.30 -1.24 16 5 C 0.14 2.07 5.56 -82.65 -0.46 1.61 16 6 C -0.17 -2.80 8.47 -39.10 -0.33 -3.13 16 7 C 0.04 0.68 5.91 -104.58 -0.62 0.07 16 8 C -0.09 -2.04 5.88 -104.83 -0.62 -2.66 16 9 C -0.02 -0.41 10.62 -16.97 -0.18 -0.59 16 10 N -0.48 -11.98 10.32 -12.29 -0.13 -12.11 16 11 C 0.05 1.43 9.89 -16.73 -0.17 1.26 16 12 C 0.06 1.55 5.58 -106.71 -0.60 0.95 16 13 C -0.45 -11.19 9.08 -37.73 -0.34 -11.54 16 14 H 0.08 1.96 7.91 -52.48 -0.41 1.54 16 15 C 0.07 1.76 5.15 -17.34 -0.09 1.67 16 16 N -0.79 -19.27 10.96 55.55 0.61 -18.66 16 17 Si 0.91 17.46 29.59 -169.99 -5.03 12.43 16 18 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 19 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 20 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 21 C -0.17 -4.05 9.32 -38.23 -0.36 -4.41 16 22 C -0.18 -2.98 9.51 -39.11 -0.37 -3.35 16 23 C 0.10 1.46 11.17 -17.61 -0.20 1.26 16 24 N -0.50 -7.76 9.01 -9.56 -0.09 -7.85 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.76 7.85 -51.93 -0.41 0.36 16 31 H 0.06 0.68 6.70 -51.93 -0.35 0.33 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.13 2.06 5.01 -52.49 -0.26 1.80 16 35 H 0.12 2.41 6.29 -52.49 -0.33 2.08 16 36 H 0.15 4.01 6.15 -52.49 -0.32 3.69 16 37 H 0.29 6.34 8.30 -40.82 -0.34 6.00 16 38 H 0.11 2.28 6.40 -52.49 -0.34 1.94 16 39 H 0.13 2.11 6.40 -52.49 -0.34 1.77 16 40 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 328.52 15.07 4.95 4.95 Total: -1.00 -27.27 328.52 -8.51 -35.78 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -5.27 Total: 8.20 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -3.56 Total: -22.74 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.40 Total: -38.62 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.43 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.27 -8.51 -35.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244020167.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.112 kcal (2) G-P(sol) polarization free energy of solvation -27.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds