Wall clock time and date at job start Tue Mar 31 2020 05:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47165 * 2 1 4 4 C 1.53003 * 109.46988 * 240.00388 * 2 1 3 5 5 C 1.50694 * 109.47214 * 120.00213 * 2 1 3 6 6 C 1.38006 * 119.56084 * 75.02346 * 5 2 1 7 7 C 1.39742 * 119.01878 * 179.72103 * 6 5 2 8 8 C 1.48393 * 120.90087 * 180.27298 * 7 6 5 9 9 C 1.39710 * 120.41110 * 359.97358 * 8 7 6 10 10 N 1.31913 * 121.14657 * 179.76659 * 9 8 7 11 11 C 1.31526 * 122.12505 * 0.50204 * 10 9 8 12 12 C 1.40766 * 120.66558 * 359.76641 * 11 10 9 13 13 C 1.41449 * 120.60263 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99818 * 155.58129 * 13 12 11 15 15 C 1.39934 * 119.99684 * 335.58140 * 13 12 11 16 16 N 1.30829 * 120.00399 * 342.35323 * 15 13 12 17 17 Si 1.86808 * 119.99703 * 162.35909 * 15 13 12 18 18 H 1.48497 * 109.46922 * 94.67045 * 17 15 13 19 19 H 1.48496 * 109.46790 * 214.67307 * 17 15 13 20 20 H 1.48498 * 109.46818 * 334.67099 * 17 15 13 21 21 C 1.39152 * 120.41134 * 180.25115 * 8 7 6 22 22 C 1.39775 * 118.19088 * 0.51740 * 7 6 5 23 23 C 1.37958 * 119.02388 * 359.48138 * 22 7 6 24 24 N 1.31909 * 119.56129 * 254.99672 * 5 2 1 25 25 H 1.08998 * 109.47043 * 299.99588 * 1 2 3 26 26 H 1.09006 * 109.46893 * 59.99955 * 1 2 3 27 27 H 1.09001 * 109.46743 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47531 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47285 * 300.00438 * 3 2 1 30 30 H 1.09006 * 109.46684 * 59.99941 * 3 2 1 31 31 H 1.08992 * 109.47458 * 299.99559 * 4 2 1 32 32 H 1.08996 * 109.47522 * 60.00076 * 4 2 1 33 33 H 1.09004 * 109.47065 * 179.97438 * 4 2 1 34 34 H 1.07994 * 120.49032 * 0.02562 * 6 5 2 35 35 H 1.07991 * 119.42681 * 359.97438 * 9 8 7 36 36 H 1.07995 * 119.66872 * 179.74980 * 11 10 9 37 37 H 0.96997 * 120.00106 * 179.97438 * 16 15 13 38 38 H 1.08002 * 120.95520 * 359.97438 * 21 8 7 39 39 H 1.08002 * 120.48077 * 179.75594 * 22 7 6 40 40 H 1.07994 * 119.55787 * 180.27196 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2304 6 6 1.9668 -2.0874 1.2960 7 6 2.4412 -2.7349 2.4398 8 6 2.3966 -4.2139 2.5522 9 6 1.8763 -4.9868 1.5111 10 7 1.8337 -6.3026 1.5937 11 6 2.2652 -6.9512 2.6534 12 6 2.8008 -6.2543 3.7529 13 6 3.2640 -6.9532 4.8922 14 1 4.0048 -6.5040 5.5370 15 6 2.7622 -8.2266 5.1836 16 7 1.6462 -8.6315 4.6341 17 14 3.6861 -9.3482 6.3576 18 1 3.1312 -9.1966 7.7266 19 1 3.5363 -10.7580 5.9160 20 1 5.1250 -8.9814 6.3632 21 6 2.8670 -4.8478 3.6981 22 6 2.9542 -1.9512 3.4774 23 6 2.9824 -0.5799 3.3293 24 7 2.5293 -0.0079 2.2301 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7488 -1.2494 32 1 1.6767 -0.2074 -2.1393 33 1 3.1300 -0.7208 -1.2496 34 1 1.5595 -2.6564 0.4734 35 1 1.5056 -4.4987 0.6220 36 1 2.2078 -8.0293 2.6804 37 1 1.2986 -9.5143 4.8359 38 1 3.2714 -4.2782 4.5218 39 1 3.3271 -2.4128 4.3797 40 1 3.3810 0.0336 4.1237 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244020167.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:46 Heat of formation + Delta-G solvation = 23.358971 kcal Electronic energy + Delta-G solvation = -21053.541909 eV Core-core repulsion = 18024.196540 eV Total energy + Delta-G solvation = -3029.345369 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.55425 -40.12030 -37.54050 -36.02082 -34.65174 -32.74781 -31.35065 -30.58923 -28.14238 -28.09063 -27.63890 -25.22160 -24.67095 -23.03946 -22.54917 -20.35228 -19.12880 -18.05083 -17.46488 -17.07975 -16.86959 -16.19984 -15.94220 -15.49468 -15.40765 -14.89995 -14.62483 -14.58035 -14.31868 -14.11211 -13.67357 -13.40492 -13.09621 -13.00832 -12.94652 -12.81425 -12.65958 -12.52608 -12.47384 -11.99509 -11.87702 -11.85262 -11.65752 -11.42388 -11.25835 -10.40085 -10.12218 -9.88257 -9.84719 -9.20027 -8.79956 -6.51736 -0.22828 0.21343 0.82713 1.21215 1.39350 1.50123 1.56137 2.16631 2.64049 2.93157 3.26492 3.53970 3.66320 3.79762 3.99240 4.12041 4.14645 4.17677 4.20200 4.27060 4.42884 4.67692 4.69792 4.74494 4.79735 4.81028 4.92054 4.93590 5.00981 5.06138 5.08480 5.13482 5.18183 5.25857 5.28327 5.38644 5.43679 5.54554 5.69698 5.75279 5.80535 6.04251 6.29385 6.67093 6.71621 7.06115 7.66195 8.20002 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.033138 B = 0.003658 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.737711 B = 7651.814887 C = 8236.975311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.020 4.020 3 C -0.119 4.119 4 C -0.141 4.141 5 C 0.135 3.865 6 C -0.169 4.169 7 C 0.007 3.993 8 C -0.083 4.083 9 C -0.031 4.031 10 N -0.491 5.491 11 C 0.021 3.979 12 C 0.038 3.962 13 C -0.479 4.479 14 H 0.089 0.911 15 C 0.036 3.964 16 N -0.819 5.819 17 Si 0.990 3.010 18 H -0.261 1.261 19 H -0.265 1.265 20 H -0.255 1.255 21 C -0.186 4.186 22 C -0.183 4.183 23 C 0.102 3.898 24 N -0.498 5.498 25 H 0.048 0.952 26 H 0.085 0.915 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.140 0.860 35 H 0.148 0.852 36 H 0.137 0.863 37 H 0.295 0.705 38 H 0.123 0.877 39 H 0.140 0.860 40 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.756 13.252 -4.646 14.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.021 4.021 3 C -0.176 4.176 4 C -0.198 4.198 5 C -0.002 4.002 6 C -0.189 4.189 7 C -0.001 4.001 8 C -0.086 4.086 9 C -0.187 4.187 10 N -0.199 5.199 11 C -0.141 4.141 12 C 0.033 3.967 13 C -0.508 4.508 14 H 0.107 0.893 15 C -0.181 4.181 16 N -0.443 5.443 17 Si 0.810 3.190 18 H -0.185 1.185 19 H -0.190 1.190 20 H -0.179 1.179 21 C -0.212 4.212 22 C -0.202 4.202 23 C -0.054 4.054 24 N -0.207 5.207 25 H 0.068 0.932 26 H 0.104 0.896 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.069 0.931 34 H 0.158 0.842 35 H 0.165 0.835 36 H 0.155 0.845 37 H 0.106 0.894 38 H 0.141 0.859 39 H 0.157 0.843 40 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 0.266 13.535 -5.433 14.587 hybrid contribution 0.503 -1.464 1.513 2.164 sum 0.769 12.072 -3.920 12.716 Atomic orbital electron populations 1.21863 0.92416 1.02185 1.02785 1.19597 0.96364 0.96093 0.90028 1.21606 1.00479 0.93483 1.02062 1.21951 1.00938 1.00503 0.96415 1.21443 0.93860 0.89923 0.94995 1.22085 1.02542 0.95648 0.98611 1.19327 0.94629 0.91783 0.94365 1.19488 1.01078 0.92024 0.95961 1.22305 1.07596 0.89286 0.99498 1.67108 1.15040 1.10655 1.27093 1.22943 1.02634 0.99543 0.89028 1.18782 0.91407 0.92297 0.94174 1.19852 1.21475 1.01160 1.08302 0.89323 1.26895 0.94126 0.99173 0.97875 1.69812 1.16486 1.20330 1.37715 0.85069 0.79432 0.76858 0.77691 1.18511 1.18970 1.17892 1.21683 1.07352 0.93876 0.98240 1.22390 1.02279 0.95589 0.99988 1.23044 0.94989 0.91919 0.95425 1.67501 1.11116 1.40983 1.01098 0.93236 0.89616 0.92880 0.93571 0.90886 0.92638 0.92421 0.89663 0.93135 0.84191 0.83520 0.84535 0.89391 0.85912 0.84253 0.79816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 8.40 71.98 0.60 -2.02 16 2 C -0.02 -0.44 0.87 -52.93 -0.05 -0.48 16 3 C -0.12 -2.34 7.80 71.98 0.56 -1.78 16 4 C -0.14 -2.71 8.08 71.98 0.58 -2.12 16 5 C 0.14 3.86 5.56 42.49 0.24 4.10 16 6 C -0.17 -5.42 8.47 22.58 0.19 -5.23 16 7 C 0.01 0.27 5.91 -19.84 -0.12 0.16 16 8 C -0.08 -3.69 5.88 -20.00 -0.12 -3.81 16 9 C -0.03 -1.44 10.62 85.04 0.90 -0.53 16 10 N -0.49 -25.51 10.32 -192.79 -1.99 -27.50 16 11 C 0.02 1.15 9.89 85.36 0.84 1.99 16 12 C 0.04 2.00 5.58 -21.21 -0.12 1.88 16 13 C -0.48 -24.43 9.08 23.47 0.21 -24.22 16 14 H 0.09 4.25 7.91 -2.91 -0.02 4.23 16 15 C 0.04 1.71 5.15 85.25 0.44 2.15 16 16 N -0.82 -41.23 10.96 21.82 0.24 -40.99 16 17 Si 0.99 35.78 29.59 68.60 2.03 37.81 16 18 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 19 H -0.27 -9.20 7.11 99.48 0.71 -8.49 16 20 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 21 C -0.19 -8.85 9.32 23.15 0.22 -8.64 16 22 C -0.18 -5.86 9.51 22.58 0.21 -5.65 16 23 C 0.10 2.82 11.17 84.61 0.95 3.77 16 24 N -0.50 -14.49 9.01 -184.17 -1.66 -16.15 16 25 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 27 H 0.05 1.09 8.09 -2.39 -0.02 1.08 16 28 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.05 1.18 7.85 -2.38 -0.02 1.17 16 31 H 0.06 1.16 6.70 -2.39 -0.02 1.14 16 32 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 33 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.14 4.19 5.01 -2.91 -0.01 4.17 16 35 H 0.15 5.80 6.29 -2.92 -0.02 5.78 16 36 H 0.14 7.67 6.15 -2.91 -0.02 7.65 16 37 H 0.30 13.32 8.30 -92.71 -0.77 12.55 16 38 H 0.12 5.28 6.40 -2.91 -0.02 5.26 16 39 H 0.14 4.24 6.40 -2.91 -0.02 4.22 16 40 H 0.18 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -60.18 328.52 5.22 -54.96 By element: Atomic # 1 Polarization: 31.25 SS G_CDS: 1.05 Total: 32.30 kcal Atomic # 6 Polarization: -45.98 SS G_CDS: 5.55 Total: -40.43 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -3.41 Total: -84.63 kcal Atomic # 14 Polarization: 35.78 SS G_CDS: 2.03 Total: 37.81 kcal Total: -60.18 5.22 -54.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244020167.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.319 kcal (2) G-P(sol) polarization free energy of solvation -60.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds