Wall clock time and date at job start Tue Mar 31 2020 05:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47191 * 2 1 4 4 C 1.52999 * 109.46823 * 239.99837 * 2 1 3 5 5 C 1.50699 * 109.46988 * 120.00383 * 2 1 3 6 6 C 1.37990 * 119.55137 * 74.99484 * 5 2 1 7 7 C 1.39953 * 118.99313 * 180.02562 * 6 5 2 8 8 C 1.48036 * 120.92772 * 179.97438 * 7 6 5 9 9 C 1.39842 * 119.44474 * 179.97438 * 8 7 6 10 10 C 1.36662 * 119.46355 * 179.97438 * 9 8 7 11 11 C 1.41277 * 118.41035 * 0.02562 * 10 9 8 12 12 C 1.41060 * 120.55768 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99155 * 155.65699 * 12 11 10 14 14 C 1.40077 * 120.00186 * 335.65830 * 12 11 10 15 15 N 1.30750 * 119.99848 * 343.34764 * 14 12 11 16 16 Si 1.86791 * 119.99765 * 163.34261 * 14 12 11 17 17 H 1.48495 * 109.47737 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46984 * 120.00122 * 16 14 12 19 19 H 1.48500 * 109.47169 * 239.99685 * 16 14 12 20 20 C 1.40968 * 118.88281 * 359.97438 * 11 10 9 21 21 N 1.31257 * 120.39772 * 0.02562 * 20 11 10 22 22 C 1.39989 * 118.14396 * 0.25200 * 7 6 5 23 23 C 1.37952 * 118.99498 * 359.52161 * 22 7 6 24 24 N 1.31910 * 119.54403 * 255.01917 * 5 2 1 25 25 H 1.08998 * 109.46715 * 300.00434 * 1 2 3 26 26 H 1.09004 * 109.46947 * 59.99392 * 1 2 3 27 27 H 1.08993 * 109.47503 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47190 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47261 * 299.99658 * 3 2 1 30 30 H 1.08997 * 109.47135 * 60.00253 * 3 2 1 31 31 H 1.08993 * 109.47913 * 300.00165 * 4 2 1 32 32 H 1.09002 * 109.47173 * 60.00924 * 4 2 1 33 33 H 1.09002 * 109.46854 * 179.97438 * 4 2 1 34 34 H 1.08002 * 120.50514 * 0.02828 * 6 5 2 35 35 H 1.07995 * 120.26589 * 359.97438 * 9 8 7 36 36 H 1.08007 * 120.79192 * 179.97438 * 10 9 8 37 37 H 0.96998 * 119.99968 * 180.02562 * 15 14 12 38 38 H 1.07999 * 119.80142 * 179.97438 * 20 11 10 39 39 H 1.08006 * 120.50480 * 179.72887 * 22 7 6 40 40 H 1.08004 * 119.54821 * 180.22332 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2304 6 6 1.9661 -2.0872 1.2960 7 6 2.4354 -2.7350 2.4444 8 6 2.3844 -4.2099 2.5605 9 6 2.8624 -4.8250 3.7219 10 6 2.8150 -6.1865 3.8297 11 6 2.2801 -6.9279 2.7526 12 6 2.2090 -8.3353 2.8160 13 1 1.4813 -8.8664 2.2204 14 6 3.0821 -9.0438 3.6513 15 7 4.1576 -8.4632 4.1158 16 14 2.7098 -10.8180 4.1016 17 1 1.4428 -11.2384 3.4513 18 1 3.8179 -11.6899 3.6355 19 1 2.5734 -10.9364 5.5756 20 6 1.8176 -6.2374 1.6139 21 7 1.8848 -4.9277 1.5586 22 6 2.9489 -1.9489 3.4827 23 6 2.9813 -0.5782 3.3304 24 7 2.5288 -0.0077 2.2302 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2493 32 1 1.6767 -0.2074 -2.1392 33 1 3.1299 -0.7209 -1.2495 34 1 1.5584 -2.6563 0.4736 35 1 3.2657 -4.2288 4.5270 36 1 3.1787 -6.6839 4.7168 37 1 4.7625 -8.9540 4.6939 38 1 1.4062 -6.7894 0.7818 39 1 3.3173 -2.4087 4.3879 40 1 3.3790 0.0367 4.1244 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244020538.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:20 Heat of formation + Delta-G solvation = 35.445693 kcal Electronic energy + Delta-G solvation = -20998.482275 eV Core-core repulsion = 17969.661026 eV Total energy + Delta-G solvation = -3028.821249 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.01010 -38.38797 -36.30131 -34.48576 -32.44642 -30.95951 -29.93943 -29.49169 -27.20457 -27.12628 -25.81730 -23.35986 -23.10648 -21.35845 -21.00877 -18.93312 -17.62960 -16.54602 -15.93084 -15.40011 -15.11357 -14.52850 -14.37626 -14.28319 -13.93902 -13.57859 -13.46305 -13.17351 -12.65126 -12.50041 -12.08910 -11.99138 -11.89015 -11.78773 -11.62016 -11.49694 -11.39562 -11.22113 -10.81939 -10.80119 -10.75162 -10.53786 -10.03759 -9.76698 -9.25324 -8.90739 -8.48022 -8.44511 -8.21884 -7.55672 -7.12142 -4.69932 1.48540 1.69377 2.60737 2.84059 2.88215 2.93341 3.10311 3.64532 4.19480 4.51868 4.54100 4.90523 5.16256 5.18255 5.29641 5.43533 5.51379 5.65136 5.69587 5.73065 5.84167 5.91400 5.94483 6.00702 6.02276 6.04751 6.15337 6.27069 6.36871 6.41298 6.44805 6.51240 6.55271 6.63138 6.72114 6.83755 7.01832 7.11472 7.27002 7.54606 7.64160 7.75302 8.18963 8.37601 8.47667 8.52744 9.42074 9.74819 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.034766 B = 0.003528 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.194113 B = 7935.315463 C = 8482.791283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.016 4.016 3 C -0.123 4.123 4 C -0.141 4.141 5 C 0.132 3.868 6 C -0.162 4.162 7 C 0.064 3.936 8 C -0.021 4.021 9 C -0.114 4.114 10 C -0.147 4.147 11 C 0.071 3.929 12 C -0.427 4.427 13 H 0.090 0.910 14 C 0.071 3.929 15 N -0.771 5.771 16 Si 0.918 3.082 17 H -0.256 1.256 18 H -0.270 1.270 19 H -0.268 1.268 20 C -0.015 4.015 21 N -0.442 5.442 22 C -0.196 4.196 23 C 0.096 3.904 24 N -0.506 5.506 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.137 0.863 35 H 0.102 0.898 36 H 0.128 0.872 37 H 0.288 0.712 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.284 8.568 -2.519 9.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.017 4.017 3 C -0.180 4.180 4 C -0.199 4.199 5 C -0.005 4.005 6 C -0.183 4.183 7 C 0.055 3.945 8 C -0.154 4.154 9 C -0.134 4.134 10 C -0.172 4.172 11 C 0.066 3.934 12 C -0.456 4.456 13 H 0.108 0.892 14 C -0.151 4.151 15 N -0.394 5.394 16 Si 0.741 3.259 17 H -0.179 1.179 18 H -0.195 1.195 19 H -0.193 1.193 20 C -0.182 4.182 21 N -0.149 5.149 22 C -0.217 4.217 23 C -0.060 4.060 24 N -0.216 5.216 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.154 0.846 35 H 0.120 0.880 36 H 0.146 0.854 37 H 0.100 0.900 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.309 9.899 -3.155 10.644 hybrid contribution 0.419 -2.364 1.299 2.730 sum -1.891 7.535 -1.856 7.987 Atomic orbital electron populations 1.21853 0.93628 1.02241 1.01637 1.19408 0.95492 0.95539 0.91278 1.21634 1.01005 0.94299 1.01081 1.21936 1.01258 1.00709 0.95958 1.20882 0.95218 0.90462 0.93931 1.21953 1.02707 0.94232 0.99369 1.19009 0.91147 0.92191 0.92115 1.18624 1.12065 0.90402 0.94293 1.21298 0.99354 0.95618 0.97156 1.21344 1.04178 0.92026 0.99624 1.18656 0.89455 0.94397 0.90884 1.19796 1.14372 0.91520 1.19870 0.89238 1.26143 0.93435 1.01856 0.93664 1.69762 1.07539 1.39112 1.22982 0.86086 0.80105 0.80357 0.79371 1.17914 1.19529 1.19308 1.22477 1.08972 0.88971 0.97742 1.66869 1.11206 1.08607 1.28223 1.22112 1.04465 0.94805 1.00284 1.22381 0.96485 0.92187 0.94903 1.67306 1.12354 1.40918 1.01024 0.92633 0.92292 0.92244 0.92823 0.93456 0.91859 0.91801 0.92318 0.92598 0.84553 0.87986 0.85413 0.90039 0.85132 0.85382 0.83673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.40 37.16 0.31 -1.37 16 2 C -0.02 -0.22 0.87 -155.66 -0.14 -0.36 16 3 C -0.12 -1.53 7.80 37.16 0.29 -1.24 16 4 C -0.14 -1.78 8.08 37.16 0.30 -1.48 16 5 C 0.13 2.23 5.56 -82.65 -0.46 1.77 16 6 C -0.16 -3.06 8.61 -39.03 -0.34 -3.40 16 7 C 0.06 1.30 5.91 -104.58 -0.62 0.68 16 8 C -0.02 -0.48 6.74 -82.75 -0.56 -1.04 16 9 C -0.11 -2.59 9.40 -39.55 -0.37 -2.96 16 10 C -0.15 -3.59 8.74 -39.00 -0.34 -3.93 16 11 C 0.07 1.77 5.59 -106.64 -0.60 1.18 16 12 C -0.43 -10.22 9.07 -37.82 -0.34 -10.56 16 13 H 0.09 2.01 7.90 -52.49 -0.41 1.60 16 14 C 0.07 1.59 5.19 -17.32 -0.09 1.50 16 15 N -0.77 -18.03 10.90 55.55 0.61 -17.42 16 16 Si 0.92 16.68 29.59 -169.99 -5.03 11.65 16 17 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 18 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 19 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 20 C -0.01 -0.36 10.97 -16.76 -0.18 -0.54 16 21 N -0.44 -10.56 9.49 -9.10 -0.09 -10.65 16 22 C -0.20 -3.47 9.49 -39.03 -0.37 -3.84 16 23 C 0.10 1.56 11.17 -17.61 -0.20 1.36 16 24 N -0.51 -8.63 9.00 -9.56 -0.09 -8.72 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.83 7.85 -51.93 -0.41 0.42 16 31 H 0.06 0.85 6.70 -51.93 -0.35 0.50 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.14 2.60 6.29 -52.49 -0.33 2.27 16 35 H 0.10 2.04 6.24 -52.49 -0.33 1.71 16 36 H 0.13 3.14 6.20 -52.48 -0.33 2.82 16 37 H 0.29 6.04 8.29 -40.82 -0.34 5.70 16 38 H 0.13 2.85 8.06 -52.49 -0.42 2.43 16 39 H 0.13 2.07 6.29 -52.48 -0.33 1.74 16 40 H 0.15 1.86 8.06 -52.48 -0.42 1.44 16 LS Contribution 330.73 15.07 4.98 4.98 Total: -1.00 -26.48 330.73 -8.73 -35.21 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -5.42 Total: 9.18 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -3.70 Total: -24.23 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.43 Total: -36.79 kcal Atomic # 14 Polarization: 16.68 SS G_CDS: -5.03 Total: 11.65 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -26.48 -8.73 -35.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244020538.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.654 kcal (2) G-P(sol) polarization free energy of solvation -26.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds