Wall clock time and date at job start Tue Mar 31 2020 05:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47191 * 2 1 4 4 C 1.52999 * 109.46823 * 239.99837 * 2 1 3 5 5 C 1.50699 * 109.46988 * 120.00383 * 2 1 3 6 6 C 1.37990 * 119.55137 * 74.99484 * 5 2 1 7 7 C 1.39953 * 118.99313 * 180.02562 * 6 5 2 8 8 C 1.48036 * 120.92772 * 179.97438 * 7 6 5 9 9 C 1.39842 * 119.44474 * 179.97438 * 8 7 6 10 10 C 1.36662 * 119.46355 * 179.97438 * 9 8 7 11 11 C 1.41277 * 118.41035 * 0.02562 * 10 9 8 12 12 C 1.41060 * 120.55768 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99155 * 155.65699 * 12 11 10 14 14 C 1.40077 * 120.00186 * 335.65830 * 12 11 10 15 15 N 1.30750 * 119.99848 * 343.34764 * 14 12 11 16 16 Si 1.86791 * 119.99765 * 163.34261 * 14 12 11 17 17 H 1.48495 * 109.47737 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46984 * 120.00122 * 16 14 12 19 19 H 1.48500 * 109.47169 * 239.99685 * 16 14 12 20 20 C 1.40968 * 118.88281 * 359.97438 * 11 10 9 21 21 N 1.31257 * 120.39772 * 0.02562 * 20 11 10 22 22 C 1.39989 * 118.14396 * 0.25200 * 7 6 5 23 23 C 1.37952 * 118.99498 * 359.52161 * 22 7 6 24 24 N 1.31910 * 119.54403 * 255.01917 * 5 2 1 25 25 H 1.08998 * 109.46715 * 300.00434 * 1 2 3 26 26 H 1.09004 * 109.46947 * 59.99392 * 1 2 3 27 27 H 1.08993 * 109.47503 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47190 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47261 * 299.99658 * 3 2 1 30 30 H 1.08997 * 109.47135 * 60.00253 * 3 2 1 31 31 H 1.08993 * 109.47913 * 300.00165 * 4 2 1 32 32 H 1.09002 * 109.47173 * 60.00924 * 4 2 1 33 33 H 1.09002 * 109.46854 * 179.97438 * 4 2 1 34 34 H 1.08002 * 120.50514 * 0.02828 * 6 5 2 35 35 H 1.07995 * 120.26589 * 359.97438 * 9 8 7 36 36 H 1.08007 * 120.79192 * 179.97438 * 10 9 8 37 37 H 0.96998 * 119.99968 * 180.02562 * 15 14 12 38 38 H 1.07999 * 119.80142 * 179.97438 * 20 11 10 39 39 H 1.08006 * 120.50480 * 179.72887 * 22 7 6 40 40 H 1.08004 * 119.54821 * 180.22332 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2304 6 6 1.9661 -2.0872 1.2960 7 6 2.4354 -2.7350 2.4444 8 6 2.3844 -4.2099 2.5605 9 6 2.8624 -4.8250 3.7219 10 6 2.8150 -6.1865 3.8297 11 6 2.2801 -6.9279 2.7526 12 6 2.2090 -8.3353 2.8160 13 1 1.4813 -8.8664 2.2204 14 6 3.0821 -9.0438 3.6513 15 7 4.1576 -8.4632 4.1158 16 14 2.7098 -10.8180 4.1016 17 1 1.4428 -11.2384 3.4513 18 1 3.8179 -11.6899 3.6355 19 1 2.5734 -10.9364 5.5756 20 6 1.8176 -6.2374 1.6139 21 7 1.8848 -4.9277 1.5586 22 6 2.9489 -1.9489 3.4827 23 6 2.9813 -0.5782 3.3304 24 7 2.5288 -0.0077 2.2302 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2493 32 1 1.6767 -0.2074 -2.1392 33 1 3.1299 -0.7209 -1.2495 34 1 1.5584 -2.6563 0.4736 35 1 3.2657 -4.2288 4.5270 36 1 3.1787 -6.6839 4.7168 37 1 4.7625 -8.9540 4.6939 38 1 1.4062 -6.7894 0.7818 39 1 3.3173 -2.4087 4.3879 40 1 3.3790 0.0367 4.1244 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244020538.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:20 Heat of formation + Delta-G solvation = 23.552759 kcal Electronic energy + Delta-G solvation = -20998.997992 eV Core-core repulsion = 17969.661026 eV Total energy + Delta-G solvation = -3029.336966 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.40596 -40.11373 -37.47930 -36.19925 -34.00283 -32.73948 -31.45329 -31.04307 -28.32405 -28.11775 -27.44988 -24.79406 -24.70498 -23.04965 -22.57315 -20.22502 -19.40892 -18.00272 -17.50440 -16.91994 -16.53422 -16.13493 -15.81362 -15.54353 -15.43920 -14.95504 -14.63296 -14.57576 -14.23287 -14.04880 -13.63390 -13.44278 -13.26458 -13.10558 -12.93486 -12.85747 -12.70701 -12.51787 -12.27337 -11.90296 -11.85104 -11.75669 -11.65445 -11.40846 -10.85301 -10.32904 -10.29312 -10.03235 -9.79021 -9.31298 -8.82750 -6.52003 -0.07856 0.31834 0.92351 1.10742 1.38226 1.53303 1.55502 2.12924 2.58350 3.01925 3.33275 3.59045 3.68365 3.76474 4.12200 4.14684 4.15044 4.26159 4.34455 4.38519 4.62938 4.68326 4.76515 4.79430 4.80897 4.87171 4.91822 4.98621 5.01601 5.05040 5.06497 5.14012 5.23448 5.26102 5.27291 5.43502 5.54117 5.56596 5.72347 5.84692 5.93321 5.94095 6.37914 6.59329 6.66005 7.15974 7.58939 8.08556 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.034766 B = 0.003528 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.194113 B = 7935.315463 C = 8482.791283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.020 4.020 3 C -0.116 4.116 4 C -0.138 4.138 5 C 0.132 3.868 6 C -0.171 4.171 7 C 0.033 3.967 8 C -0.028 4.028 9 C -0.118 4.118 10 C -0.164 4.164 11 C 0.046 3.954 12 C -0.456 4.456 13 H 0.095 0.905 14 C 0.034 3.966 15 N -0.802 5.802 16 Si 0.993 3.007 17 H -0.253 1.253 18 H -0.264 1.264 19 H -0.262 1.262 20 C -0.035 4.035 21 N -0.453 5.453 22 C -0.196 4.196 23 C 0.102 3.898 24 N -0.506 5.506 25 H 0.050 0.950 26 H 0.086 0.914 27 H 0.046 0.954 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.121 0.879 37 H 0.298 0.702 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.366 9.841 -2.421 10.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.021 4.021 3 C -0.174 4.174 4 C -0.196 4.196 5 C -0.004 4.004 6 C -0.192 4.192 7 C 0.024 3.976 8 C -0.162 4.162 9 C -0.139 4.139 10 C -0.189 4.189 11 C 0.041 3.959 12 C -0.484 4.484 13 H 0.113 0.887 14 C -0.185 4.185 15 N -0.425 5.425 16 Si 0.812 3.188 17 H -0.176 1.176 18 H -0.188 1.188 19 H -0.186 1.186 20 C -0.200 4.200 21 N -0.161 5.161 22 C -0.217 4.217 23 C -0.054 4.054 24 N -0.216 5.216 25 H 0.069 0.931 26 H 0.104 0.896 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.066 0.934 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.139 0.861 37 H 0.109 0.891 38 H 0.160 0.840 39 H 0.161 0.839 40 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -2.393 11.179 -3.071 11.838 hybrid contribution 0.472 -2.550 1.247 2.878 sum -1.921 8.630 -1.823 9.027 Atomic orbital electron populations 1.21833 0.92524 1.01839 1.02790 1.19575 0.96341 0.96128 0.90040 1.21585 1.00405 0.93296 1.02081 1.21920 1.00727 1.00252 0.96684 1.21384 0.94163 0.89860 0.95038 1.21974 1.03147 0.95241 0.98848 1.19132 0.93405 0.91066 0.93954 1.19137 1.11088 0.91978 0.94020 1.21557 0.99030 0.95341 0.97925 1.21394 1.05182 0.92840 0.99527 1.18953 0.90250 0.95340 0.91384 1.20070 1.15386 0.91526 1.21401 0.88746 1.27007 0.92633 1.06042 0.92791 1.69789 1.08303 1.41086 1.23345 0.84978 0.79952 0.74728 0.79125 1.17605 1.18812 1.18638 1.22710 1.09801 0.89338 0.98185 1.66911 1.11745 1.08626 1.28823 1.22327 1.03852 0.95446 1.00026 1.23006 0.95092 0.91940 0.95377 1.67461 1.12049 1.40863 1.01262 0.93065 0.89552 0.93447 0.93669 0.90859 0.92471 0.93117 0.89560 0.93405 0.85530 0.85426 0.86098 0.89067 0.84049 0.83932 0.79771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.40 71.98 0.60 -2.41 16 2 C -0.02 -0.51 0.87 -52.93 -0.05 -0.56 16 3 C -0.12 -2.59 7.80 71.98 0.56 -2.02 16 4 C -0.14 -3.29 8.08 71.98 0.58 -2.71 16 5 C 0.13 4.33 5.56 42.49 0.24 4.57 16 6 C -0.17 -6.50 8.61 22.63 0.19 -6.31 16 7 C 0.03 1.34 5.91 -19.84 -0.12 1.22 16 8 C -0.03 -1.34 6.74 41.96 0.28 -1.05 16 9 C -0.12 -5.49 9.40 22.29 0.21 -5.28 16 10 C -0.16 -8.30 8.74 22.65 0.20 -8.10 16 11 C 0.05 2.36 5.59 -21.17 -0.12 2.24 16 12 C -0.46 -22.43 9.07 23.41 0.21 -22.22 16 13 H 0.09 4.37 7.90 -2.91 -0.02 4.34 16 14 C 0.03 1.55 5.19 85.30 0.44 1.99 16 15 N -0.80 -38.06 10.90 21.85 0.24 -37.82 16 16 Si 0.99 33.94 29.59 68.60 2.03 35.97 16 17 H -0.25 -8.44 7.11 99.48 0.71 -7.73 16 18 H -0.26 -8.67 7.11 99.48 0.71 -7.96 16 19 H -0.26 -8.63 7.11 99.48 0.71 -7.92 16 20 C -0.03 -1.75 10.97 85.45 0.94 -0.81 16 21 N -0.45 -22.45 9.49 -182.69 -1.73 -24.18 16 22 C -0.20 -6.67 9.49 22.63 0.21 -6.45 16 23 C 0.10 3.03 11.17 84.61 0.95 3.98 16 24 N -0.51 -16.23 9.00 -184.17 -1.66 -17.89 16 25 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.05 1.18 8.08 -2.39 -0.02 1.17 16 28 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.06 1.34 7.85 -2.39 -0.02 1.32 16 31 H 0.05 1.33 6.70 -2.39 -0.02 1.31 16 32 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.13 4.98 6.29 -2.91 -0.02 4.96 16 35 H 0.13 5.06 6.24 -2.91 -0.02 5.04 16 36 H 0.12 6.15 6.20 -2.91 -0.02 6.14 16 37 H 0.30 12.54 8.29 -92.71 -0.77 11.77 16 38 H 0.14 6.47 8.06 -2.91 -0.02 6.45 16 39 H 0.14 4.34 6.29 -2.91 -0.02 4.32 16 40 H 0.19 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -58.27 330.73 5.26 -53.01 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: 1.04 Total: 34.82 kcal Atomic # 6 Polarization: -49.25 SS G_CDS: 5.34 Total: -43.91 kcal Atomic # 7 Polarization: -76.74 SS G_CDS: -3.15 Total: -79.90 kcal Atomic # 14 Polarization: 33.94 SS G_CDS: 2.03 Total: 35.97 kcal Total: -58.27 5.26 -53.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244020538.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.565 kcal (2) G-P(sol) polarization free energy of solvation -58.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds