Wall clock time and date at job start Tue Mar 31 2020 05:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 C 1.50698 * 109.47184 * 240.00631 * 2 1 3 6 6 C 1.38045 * 119.56406 * 74.99460 * 5 2 1 7 7 C 1.39739 * 119.01758 * 179.97438 * 6 5 2 8 8 C 1.48377 * 120.90423 * 180.02562 * 7 6 5 9 9 C 1.39847 * 119.59918 * 179.72993 * 8 7 6 10 10 C 1.38736 * 119.46023 * 179.70827 * 9 8 7 11 11 C 1.38262 * 118.67980 * 0.55974 * 10 9 8 12 12 C 1.40700 * 119.18336 * 359.72119 * 11 10 9 13 13 C 1.41401 * 119.77102 * 180.02562 * 12 11 10 14 14 H 1.07994 * 119.99654 * 359.97438 * 13 12 11 15 15 C 1.40022 * 120.00022 * 179.97438 * 13 12 11 16 16 N 1.30741 * 119.99971 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99819 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47347 * 89.99715 * 17 15 13 19 19 H 1.48495 * 109.47122 * 209.99997 * 17 15 13 20 20 H 1.48507 * 109.47203 * 329.99937 * 17 15 13 21 21 N 1.32200 * 119.60447 * 0.02562 * 8 7 6 22 22 C 1.39785 * 118.18796 * 0.02562 * 7 6 5 23 23 C 1.38000 * 119.01611 * 359.97438 * 22 7 6 24 24 N 1.31883 * 119.55551 * 254.72276 * 5 2 1 25 25 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 26 26 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 28 28 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 29 29 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 31 31 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 32 32 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 33 33 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 34 34 H 1.08000 * 120.48634 * 359.95651 * 6 5 2 35 35 H 1.08000 * 120.27049 * 359.97438 * 9 8 7 36 36 H 1.07999 * 120.65794 * 180.26322 * 10 9 8 37 37 H 1.08004 * 120.40616 * 179.71181 * 11 10 9 38 38 H 0.96999 * 119.99829 * 179.97438 * 16 15 13 39 39 H 1.08000 * 120.49280 * 179.97438 * 22 7 6 40 40 H 1.08001 * 119.55337 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 2.0324 -0.7103 -1.2305 6 6 1.9664 -0.0786 -2.4562 7 6 2.4359 -0.7476 -3.5897 8 6 2.3855 -0.1079 -4.9276 9 6 2.8682 -0.8001 -6.0427 10 6 2.8141 -0.2017 -7.2932 11 6 2.2915 1.0742 -7.3962 12 6 1.8273 1.7211 -6.2362 13 6 1.2899 3.0259 -6.3273 14 1 1.2373 3.5224 -7.2849 15 6 0.8261 3.6740 -5.1761 16 7 0.8894 3.0726 -4.0169 17 14 0.1168 5.3979 -5.2964 18 1 -1.3459 5.3156 -5.5385 19 1 0.3683 6.1263 -4.0271 20 1 0.7644 6.1223 -6.4195 21 7 1.8903 1.1117 -5.0501 22 6 2.9543 -2.0357 -3.4287 23 6 2.9829 -2.5929 -2.1665 24 7 2.5342 -1.9250 -1.1212 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 -1.7490 1.2492 32 1 3.1301 -0.7209 1.2493 33 1 1.6767 -0.2075 2.1392 34 1 1.5575 0.9177 -2.5379 35 1 3.2757 -1.7941 -5.9321 36 1 3.1775 -0.7203 -8.1681 37 1 2.2403 1.5681 -8.3553 38 1 0.5684 3.5217 -3.2194 39 1 3.3270 -2.5867 -4.2796 40 1 3.3812 -3.5878 -2.0323 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244021830.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:32 Heat of formation + Delta-G solvation = 49.005783 kcal Electronic energy + Delta-G solvation = -21725.945889 eV Core-core repulsion = 18697.712649 eV Total energy + Delta-G solvation = -3028.233240 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.99769 -38.19241 -36.21590 -33.86337 -32.54812 -30.70504 -29.83325 -29.32695 -27.03860 -26.98287 -25.78503 -23.63067 -22.97458 -21.18597 -20.90580 -18.80377 -17.54005 -16.30698 -15.60316 -15.27004 -15.05179 -14.46780 -14.21196 -14.16581 -13.85598 -13.50149 -13.33646 -13.08953 -12.60195 -12.34911 -12.02679 -11.96227 -11.77507 -11.56524 -11.34398 -11.30554 -11.13469 -10.82857 -10.68974 -10.67682 -10.57127 -10.40860 -10.04643 -9.72346 -9.24445 -8.89132 -8.39220 -8.22554 -7.75193 -7.48635 -6.53187 -4.62965 1.47409 1.73897 2.74542 3.01207 3.03643 3.05996 3.15412 3.87063 4.33226 4.58278 4.73390 4.99161 5.14806 5.29843 5.37102 5.50706 5.65066 5.79548 5.80899 5.88217 5.91580 5.96155 6.07204 6.09450 6.12335 6.18374 6.26734 6.32946 6.40180 6.45568 6.53327 6.58300 6.62550 6.70188 6.74617 7.01309 7.11104 7.20683 7.37080 7.46054 7.60017 7.89351 8.11176 8.51381 8.55035 8.79439 9.91097 10.19495 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013989 B = 0.006646 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.052427 B = 4211.905696 C = 6021.898565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.014 4.014 3 C -0.143 4.143 4 C -0.123 4.123 5 C 0.122 3.878 6 C -0.127 4.127 7 C 0.025 3.975 8 C 0.168 3.832 9 C -0.295 4.295 10 C -0.061 4.061 11 C -0.266 4.266 12 C 0.255 3.745 13 C -0.429 4.429 14 H 0.085 0.915 15 C 0.071 3.929 16 N -0.717 5.717 17 Si 0.907 3.093 18 H -0.269 1.269 19 H -0.275 1.275 20 H -0.262 1.262 21 N -0.463 5.463 22 C -0.172 4.172 23 C 0.083 3.917 24 N -0.491 5.491 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.047 0.953 34 H 0.163 0.837 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.273 0.727 39 H 0.131 0.869 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.576 -4.053 6.443 7.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.015 4.015 3 C -0.201 4.201 4 C -0.180 4.180 5 C -0.015 4.015 6 C -0.147 4.147 7 C 0.017 3.983 8 C 0.024 3.976 9 C -0.319 4.319 10 C -0.084 4.084 11 C -0.289 4.289 12 C 0.129 3.871 13 C -0.460 4.460 14 H 0.103 0.897 15 C -0.154 4.154 16 N -0.338 5.338 17 Si 0.732 3.268 18 H -0.194 1.194 19 H -0.200 1.200 20 H -0.186 1.186 21 N -0.176 5.176 22 C -0.193 4.193 23 C -0.073 4.073 24 N -0.201 5.201 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.181 0.819 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.084 0.916 39 H 0.149 0.851 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.247 -3.922 8.202 9.095 hybrid contribution 0.087 0.546 -1.915 1.993 sum 0.333 -3.376 6.288 7.144 Atomic orbital electron populations 1.21862 0.93565 1.01809 1.02201 1.19395 0.95559 0.94702 0.91869 1.21958 1.01072 0.94445 1.02594 1.21643 1.00917 1.00367 0.95095 1.21011 0.95757 0.90673 0.94101 1.22478 0.98397 1.02771 0.91056 1.19213 0.93673 0.92388 0.93055 1.19613 0.95604 0.92265 0.90167 1.21200 1.15421 1.01541 0.93717 1.20803 0.96952 0.94828 0.95867 1.21834 1.11032 0.96948 0.99119 1.18518 0.89404 0.92988 0.86142 1.19612 1.33635 0.97752 0.94994 0.89718 1.26024 0.94748 0.99631 0.94996 1.70063 1.29138 1.35746 0.98871 0.86323 0.79899 0.81699 0.78928 1.19383 1.20021 1.18565 1.68672 1.17111 1.06235 1.25561 1.22192 1.02237 0.96020 0.98836 1.22406 0.97650 0.99179 0.88106 1.67282 1.10779 1.08332 1.33658 0.91870 0.92812 0.92320 0.92439 0.92798 0.90995 0.91972 0.92893 0.93434 0.81904 0.88326 0.88286 0.88090 0.91606 0.85133 0.83528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.40 37.16 0.31 -1.61 16 2 C -0.01 -0.22 0.87 -155.66 -0.14 -0.35 16 3 C -0.14 -2.10 8.08 37.16 0.30 -1.80 16 4 C -0.12 -1.65 7.80 37.16 0.29 -1.36 16 5 C 0.12 2.20 5.56 -82.64 -0.46 1.74 16 6 C -0.13 -2.61 8.61 -39.09 -0.34 -2.95 16 7 C 0.03 0.54 5.91 -104.58 -0.62 -0.08 16 8 C 0.17 4.03 6.74 -82.93 -0.56 3.47 16 9 C -0.29 -6.52 9.50 -38.80 -0.37 -6.89 16 10 C -0.06 -1.32 10.15 -39.39 -0.40 -1.72 16 11 C -0.27 -6.35 9.83 -38.64 -0.38 -6.73 16 12 C 0.25 6.75 6.55 -85.01 -0.56 6.19 16 13 C -0.43 -11.01 9.14 -37.71 -0.34 -11.35 16 14 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 15 C 0.07 1.72 5.50 -17.35 -0.10 1.63 16 16 N -0.72 -17.72 11.24 55.55 0.62 -17.09 16 17 Si 0.91 17.86 29.56 -169.99 -5.02 12.84 16 18 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 19 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 20 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 21 N -0.46 -12.23 7.02 -7.67 -0.05 -12.28 16 22 C -0.17 -3.06 9.49 -39.09 -0.37 -3.43 16 23 C 0.08 1.35 11.17 -17.60 -0.20 1.16 16 24 N -0.49 -8.63 9.00 -9.55 -0.09 -8.72 16 25 H 0.06 0.97 8.08 -51.93 -0.42 0.55 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.18 6.70 -51.93 -0.35 0.83 16 31 H 0.06 0.86 7.85 -51.93 -0.41 0.45 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.16 3.64 6.08 -52.49 -0.32 3.32 16 35 H 0.10 1.89 6.26 -52.49 -0.33 1.56 16 36 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.10 2.21 8.06 -52.48 -0.42 1.78 16 38 H 0.27 6.09 8.29 -40.82 -0.34 5.75 16 39 H 0.13 2.06 6.30 -52.49 -0.33 1.73 16 40 H 0.15 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 331.90 15.07 5.00 5.00 Total: -1.00 -27.73 331.90 -8.96 -36.69 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -5.51 Total: 7.66 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: -3.92 Total: -24.09 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.48 Total: -38.10 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.02 Total: 12.84 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.73 -8.96 -36.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244021830.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.695 kcal (2) G-P(sol) polarization free energy of solvation -27.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds