Wall clock time and date at job start Tue Mar 31 2020 05:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46865 * 2 1 4 4 C 1.52995 * 109.47063 * 239.99666 * 2 1 3 5 5 C 1.50707 * 109.46960 * 119.99743 * 2 1 3 6 6 C 1.38037 * 119.55739 * 75.28076 * 5 2 1 7 7 C 1.39722 * 119.01488 * 180.29370 * 6 5 2 8 8 C 1.48412 * 120.90187 * 179.70775 * 7 6 5 9 9 C 1.40032 * 120.82165 * 359.44427 * 8 7 6 10 10 C 1.38542 * 119.42011 * 180.25011 * 9 8 7 11 11 N 1.31454 * 121.14529 * 0.02715 * 10 9 8 12 12 C 1.33627 * 121.79338 * 359.97438 * 11 10 9 13 13 C 1.41426 * 119.77458 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99697 * 179.97438 * 13 12 11 15 15 C 1.40036 * 120.00319 * 359.97438 * 13 12 11 16 16 N 1.30741 * 119.99718 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00006 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47042 * 89.99983 * 17 15 13 19 19 H 1.48501 * 109.46706 * 210.00066 * 17 15 13 20 20 H 1.48502 * 109.47125 * 329.99614 * 17 15 13 21 21 C 1.39285 * 120.82144 * 179.72440 * 8 7 6 22 22 C 1.39765 * 118.19229 * 359.44090 * 7 6 5 23 23 C 1.37986 * 119.02147 * 0.27092 * 22 7 6 24 24 N 1.31891 * 119.55991 * 255.00266 * 5 2 1 25 25 H 1.09001 * 109.47268 * 300.00281 * 1 2 3 26 26 H 1.09004 * 109.46685 * 60.00431 * 1 2 3 27 27 H 1.09001 * 109.47304 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46316 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47130 * 299.99305 * 3 2 1 30 30 H 1.08994 * 109.47670 * 60.00113 * 3 2 1 31 31 H 1.08998 * 109.47610 * 299.99920 * 4 2 1 32 32 H 1.08994 * 109.47442 * 60.00382 * 4 2 1 33 33 H 1.09009 * 109.46868 * 180.02562 * 4 2 1 34 34 H 1.07994 * 120.49449 * 0.02562 * 6 5 2 35 35 H 1.07993 * 120.28550 * 0.24742 * 9 8 7 36 36 H 1.08005 * 119.42373 * 180.02562 * 10 9 8 37 37 H 0.96997 * 119.99561 * 180.02562 * 16 15 13 38 38 H 1.07997 * 120.57795 * 359.70033 * 21 8 7 39 39 H 1.07995 * 120.48881 * 180.29727 * 22 7 6 40 40 H 1.08002 * 119.55772 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2306 6 6 1.9717 -2.0880 1.2940 7 6 2.4348 -2.7345 2.4428 8 6 2.3834 -4.2133 2.5583 9 6 1.8584 -4.9960 1.5226 10 6 1.8197 -6.3737 1.6633 11 7 2.2668 -6.9587 2.7523 12 6 2.7771 -6.2579 3.7691 13 6 3.2464 -6.9314 4.9208 14 1 3.6599 -6.3686 5.7445 15 6 3.1749 -8.3281 4.9930 16 7 2.6738 -9.0094 3.9959 17 14 3.7940 -9.2176 6.5144 18 1 2.6845 -9.3584 7.4914 19 1 4.2913 -10.5638 6.1326 20 1 4.8985 -8.4378 7.1286 21 6 2.8508 -4.8564 3.7019 22 6 2.9531 -1.9512 3.4778 23 6 2.9821 -0.5797 3.3293 24 7 2.5291 -0.0079 2.2302 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 -1.7490 -1.2492 32 1 1.6768 -0.2075 -2.1392 33 1 3.1301 -0.7217 -1.2489 34 1 1.5682 -2.6573 0.4698 35 1 1.4869 -4.5297 0.6221 36 1 1.4152 -6.9775 0.8644 37 1 2.6239 -9.9768 4.0462 38 1 3.2632 -4.2879 4.5222 39 1 3.3257 -2.4127 4.3804 40 1 3.3811 0.0339 4.1235 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244022798.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:56 Heat of formation + Delta-G solvation = 48.298557 kcal Electronic energy + Delta-G solvation = -21042.534100 eV Core-core repulsion = 18014.270193 eV Total energy + Delta-G solvation = -3028.263907 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.28180 -38.21480 -36.49543 -34.01093 -32.94282 -30.53925 -29.83727 -29.44296 -27.30286 -27.22378 -25.86419 -23.84917 -23.21300 -21.41479 -20.84958 -19.15683 -17.42775 -16.40190 -16.00047 -15.48701 -15.23872 -14.48360 -14.39673 -14.13993 -13.97384 -13.75127 -13.58414 -13.28905 -12.70745 -12.40089 -12.21693 -12.20059 -11.97828 -11.91625 -11.64825 -11.29838 -11.19252 -11.06299 -10.96665 -10.87214 -10.68365 -10.45818 -10.07649 -9.92224 -9.33960 -9.13582 -8.68219 -7.84703 -7.75626 -7.68935 -6.49835 -4.63022 1.28267 1.43626 2.66386 3.02144 3.04163 3.06979 3.15667 3.87848 4.18033 4.31179 4.68947 4.70396 5.00695 5.03417 5.17216 5.22087 5.41837 5.47816 5.57715 5.65778 5.76065 5.76772 5.80648 5.85657 5.89428 5.91388 5.97647 6.07103 6.16337 6.27529 6.30909 6.36784 6.46001 6.49652 6.60307 6.84107 7.01437 7.04097 7.20115 7.39506 7.57090 7.87153 8.12026 8.27666 8.54269 8.79796 9.99833 10.22241 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.033136 B = 0.003653 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.808744 B = 7662.422720 C = 8316.161992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.017 4.017 3 C -0.124 4.124 4 C -0.142 4.142 5 C 0.133 3.867 6 C -0.163 4.163 7 C 0.028 3.972 8 C -0.011 4.011 9 C -0.300 4.300 10 C 0.125 3.875 11 N -0.480 5.480 12 C 0.253 3.747 13 C -0.429 4.429 14 H 0.085 0.915 15 C 0.068 3.932 16 N -0.713 5.713 17 Si 0.909 3.091 18 H -0.268 1.268 19 H -0.275 1.275 20 H -0.261 1.261 21 C -0.245 4.245 22 C -0.174 4.174 23 C 0.096 3.904 24 N -0.493 5.493 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.134 0.866 35 H 0.097 0.903 36 H 0.121 0.879 37 H 0.274 0.726 38 H 0.104 0.896 39 H 0.136 0.864 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.488 12.347 -5.201 13.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.018 4.018 3 C -0.181 4.181 4 C -0.199 4.199 5 C -0.004 4.004 6 C -0.183 4.183 7 C 0.021 3.979 8 C -0.017 4.017 9 C -0.323 4.323 10 C -0.040 4.040 11 N -0.192 5.192 12 C 0.128 3.872 13 C -0.460 4.460 14 H 0.103 0.897 15 C -0.158 4.158 16 N -0.334 5.334 17 Si 0.732 3.268 18 H -0.193 1.193 19 H -0.200 1.200 20 H -0.185 1.185 21 C -0.268 4.268 22 C -0.194 4.194 23 C -0.060 4.060 24 N -0.203 5.203 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.152 0.848 35 H 0.115 0.885 36 H 0.139 0.861 37 H 0.085 0.915 38 H 0.122 0.878 39 H 0.153 0.847 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.515 12.116 -5.226 13.282 hybrid contribution 0.292 -0.528 0.729 0.946 sum -1.222 11.588 -4.498 12.490 Atomic orbital electron populations 1.21867 0.93424 1.02250 1.01917 1.19444 0.95623 0.95728 0.91034 1.21646 1.01080 0.94116 1.01304 1.21945 1.01375 1.00504 0.96097 1.20935 0.95056 0.90290 0.94121 1.21996 1.02476 0.94781 0.99001 1.19444 0.92341 0.93711 0.92449 1.18511 0.98791 0.89043 0.95325 1.21329 1.15409 0.95357 1.00220 1.22480 0.94687 0.91010 0.95814 1.68709 1.13123 1.37528 0.99882 1.18559 0.89087 0.87651 0.91885 1.19648 1.34112 0.91567 1.00696 0.89719 1.26081 0.94159 0.98194 0.97328 1.70126 1.27134 1.07753 1.28425 0.86308 0.79950 0.78985 0.81519 1.19322 1.20032 1.18474 1.21886 1.10727 0.96018 0.98192 1.22280 1.01945 0.94793 1.00353 1.22538 0.96246 0.92337 0.94917 1.67347 1.11132 1.40950 1.00830 0.92486 0.92068 0.92306 0.92730 0.93244 0.91765 0.92039 0.92043 0.92444 0.84828 0.88458 0.86106 0.91473 0.87813 0.84655 0.83165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.41 37.16 0.31 -1.17 16 2 C -0.02 -0.21 0.87 -155.66 -0.14 -0.35 16 3 C -0.12 -1.38 7.81 37.16 0.29 -1.09 16 4 C -0.14 -1.53 8.08 37.15 0.30 -1.23 16 5 C 0.13 2.03 5.56 -82.64 -0.46 1.57 16 6 C -0.16 -2.71 8.49 -39.10 -0.33 -3.04 16 7 C 0.03 0.53 5.91 -104.58 -0.62 -0.09 16 8 C -0.01 -0.23 5.91 -104.65 -0.62 -0.85 16 9 C -0.30 -6.52 9.54 -38.80 -0.37 -6.90 16 10 C 0.13 2.96 11.17 -17.60 -0.20 2.77 16 11 N -0.48 -12.98 7.84 -11.20 -0.09 -13.07 16 12 C 0.25 6.75 6.55 -85.02 -0.56 6.20 16 13 C -0.43 -11.21 9.14 -37.70 -0.34 -11.55 16 14 H 0.08 2.05 7.85 -52.49 -0.41 1.64 16 15 C 0.07 1.70 5.50 -17.34 -0.10 1.60 16 16 N -0.71 -18.65 11.46 55.55 0.64 -18.02 16 17 Si 0.91 18.15 29.56 -169.99 -5.02 13.13 16 18 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 19 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 20 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 21 C -0.24 -5.83 9.25 -38.34 -0.35 -6.19 16 22 C -0.17 -2.92 9.52 -39.10 -0.37 -3.29 16 23 C 0.10 1.44 11.17 -17.61 -0.20 1.24 16 24 N -0.49 -7.72 9.00 -9.55 -0.09 -7.81 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.76 7.85 -51.93 -0.41 0.35 16 31 H 0.06 0.67 6.69 -51.93 -0.35 0.32 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 34 H 0.13 2.08 5.07 -52.49 -0.27 1.81 16 35 H 0.10 1.84 6.41 -52.49 -0.34 1.50 16 36 H 0.12 2.52 8.06 -52.48 -0.42 2.09 16 37 H 0.27 6.47 8.29 -40.82 -0.34 6.13 16 38 H 0.10 2.26 6.42 -52.49 -0.34 1.92 16 39 H 0.14 2.15 6.43 -52.49 -0.34 1.81 16 40 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 330.13 15.07 4.98 4.98 Total: -1.00 -28.93 330.13 -8.72 -37.65 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -5.38 Total: 5.52 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: -3.75 Total: -22.37 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.46 Total: -38.90 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.02 Total: 13.13 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.93 -8.72 -37.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244022798.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.948 kcal (2) G-P(sol) polarization free energy of solvation -28.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds