Wall clock time and date at job start Tue Mar 31 2020 05:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46865 * 2 1 4 4 C 1.52995 * 109.47063 * 239.99666 * 2 1 3 5 5 C 1.50707 * 109.46960 * 119.99743 * 2 1 3 6 6 C 1.38037 * 119.55739 * 75.28076 * 5 2 1 7 7 C 1.39722 * 119.01488 * 180.29370 * 6 5 2 8 8 C 1.48412 * 120.90187 * 179.70775 * 7 6 5 9 9 C 1.40032 * 120.82165 * 359.44427 * 8 7 6 10 10 C 1.38542 * 119.42011 * 180.25011 * 9 8 7 11 11 N 1.31454 * 121.14529 * 0.02715 * 10 9 8 12 12 C 1.33627 * 121.79338 * 359.97438 * 11 10 9 13 13 C 1.41426 * 119.77458 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99697 * 179.97438 * 13 12 11 15 15 C 1.40036 * 120.00319 * 359.97438 * 13 12 11 16 16 N 1.30741 * 119.99718 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00006 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47042 * 89.99983 * 17 15 13 19 19 H 1.48501 * 109.46706 * 210.00066 * 17 15 13 20 20 H 1.48502 * 109.47125 * 329.99614 * 17 15 13 21 21 C 1.39285 * 120.82144 * 179.72440 * 8 7 6 22 22 C 1.39765 * 118.19229 * 359.44090 * 7 6 5 23 23 C 1.37986 * 119.02147 * 0.27092 * 22 7 6 24 24 N 1.31891 * 119.55991 * 255.00266 * 5 2 1 25 25 H 1.09001 * 109.47268 * 300.00281 * 1 2 3 26 26 H 1.09004 * 109.46685 * 60.00431 * 1 2 3 27 27 H 1.09001 * 109.47304 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46316 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47130 * 299.99305 * 3 2 1 30 30 H 1.08994 * 109.47670 * 60.00113 * 3 2 1 31 31 H 1.08998 * 109.47610 * 299.99920 * 4 2 1 32 32 H 1.08994 * 109.47442 * 60.00382 * 4 2 1 33 33 H 1.09009 * 109.46868 * 180.02562 * 4 2 1 34 34 H 1.07994 * 120.49449 * 0.02562 * 6 5 2 35 35 H 1.07993 * 120.28550 * 0.24742 * 9 8 7 36 36 H 1.08005 * 119.42373 * 180.02562 * 10 9 8 37 37 H 0.96997 * 119.99561 * 180.02562 * 16 15 13 38 38 H 1.07997 * 120.57795 * 359.70033 * 21 8 7 39 39 H 1.07995 * 120.48881 * 180.29727 * 22 7 6 40 40 H 1.08002 * 119.55772 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2306 6 6 1.9717 -2.0880 1.2940 7 6 2.4348 -2.7345 2.4428 8 6 2.3834 -4.2133 2.5583 9 6 1.8584 -4.9960 1.5226 10 6 1.8197 -6.3737 1.6633 11 7 2.2668 -6.9587 2.7523 12 6 2.7771 -6.2579 3.7691 13 6 3.2464 -6.9314 4.9208 14 1 3.6599 -6.3686 5.7445 15 6 3.1749 -8.3281 4.9930 16 7 2.6738 -9.0094 3.9959 17 14 3.7940 -9.2176 6.5144 18 1 2.6845 -9.3584 7.4914 19 1 4.2913 -10.5638 6.1326 20 1 4.8985 -8.4378 7.1286 21 6 2.8508 -4.8564 3.7019 22 6 2.9531 -1.9512 3.4778 23 6 2.9821 -0.5797 3.3293 24 7 2.5291 -0.0079 2.2302 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 -1.7490 -1.2492 32 1 1.6768 -0.2075 -2.1392 33 1 3.1301 -0.7217 -1.2489 34 1 1.5682 -2.6573 0.4698 35 1 1.4869 -4.5297 0.6221 36 1 1.4152 -6.9775 0.8644 37 1 2.6239 -9.9768 4.0462 38 1 3.2632 -4.2879 4.5222 39 1 3.3257 -2.4127 4.3804 40 1 3.3811 0.0339 4.1235 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244022798.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:55 Heat of formation + Delta-G solvation = 34.080037 kcal Electronic energy + Delta-G solvation = -21043.150661 eV Core-core repulsion = 18014.270193 eV Total energy + Delta-G solvation = -3028.880469 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.54548 -39.97015 -37.55126 -35.74172 -34.55429 -32.16303 -31.29510 -31.02268 -28.18425 -28.11149 -27.69856 -25.26784 -24.60691 -23.02187 -22.47410 -20.43437 -19.02556 -17.93194 -17.41819 -17.02130 -16.55820 -15.91872 -15.75090 -15.54633 -15.48469 -15.10004 -14.62467 -14.49911 -14.35191 -14.06769 -13.64098 -13.41448 -13.04564 -12.96627 -12.89400 -12.78800 -12.64488 -12.52211 -12.17052 -11.96311 -11.89383 -11.75842 -11.61556 -11.56441 -11.10026 -10.38738 -9.89547 -9.66417 -9.57111 -9.49415 -8.33647 -6.56900 -0.17678 0.19516 0.84497 1.37554 1.40002 1.53398 1.56237 2.21092 2.75865 2.96585 3.24966 3.53887 3.76335 3.89968 4.06229 4.10683 4.12522 4.16318 4.20696 4.26684 4.49931 4.64891 4.76994 4.78975 4.81123 4.84841 4.86486 4.91852 5.00059 5.05601 5.08593 5.14646 5.19151 5.24850 5.33395 5.42249 5.42989 5.52040 5.57435 5.78668 5.83682 6.06691 6.22901 6.67373 6.89319 7.03945 8.12697 8.41519 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.033136 B = 0.003653 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.808744 B = 7662.422720 C = 8316.161992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.020 4.020 3 C -0.119 4.119 4 C -0.140 4.140 5 C 0.133 3.867 6 C -0.163 4.163 7 C -0.001 4.001 8 C -0.008 4.008 9 C -0.293 4.293 10 C 0.107 3.893 11 N -0.518 5.518 12 C 0.222 3.778 13 C -0.467 4.467 14 H 0.091 0.909 15 C 0.023 3.977 16 N -0.755 5.755 17 Si 0.988 3.012 18 H -0.262 1.262 19 H -0.268 1.268 20 H -0.254 1.254 21 C -0.266 4.266 22 C -0.180 4.180 23 C 0.101 3.899 24 N -0.496 5.496 25 H 0.048 0.952 26 H 0.085 0.915 27 H 0.053 0.947 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.048 0.952 34 H 0.142 0.858 35 H 0.129 0.871 36 H 0.143 0.857 37 H 0.280 0.720 38 H 0.115 0.885 39 H 0.138 0.862 40 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.615 14.234 -5.756 15.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.021 4.021 3 C -0.177 4.177 4 C -0.198 4.198 5 C -0.004 4.004 6 C -0.183 4.183 7 C -0.009 4.009 8 C -0.014 4.014 9 C -0.316 4.316 10 C -0.057 4.057 11 N -0.232 5.232 12 C 0.098 3.902 13 C -0.498 4.498 14 H 0.109 0.891 15 C -0.198 4.198 16 N -0.377 5.377 17 Si 0.808 3.192 18 H -0.187 1.187 19 H -0.192 1.192 20 H -0.178 1.178 21 C -0.289 4.289 22 C -0.200 4.200 23 C -0.055 4.055 24 N -0.205 5.205 25 H 0.067 0.933 26 H 0.104 0.896 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.160 0.840 35 H 0.146 0.854 36 H 0.160 0.840 37 H 0.091 0.909 38 H 0.133 0.867 39 H 0.156 0.844 40 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -1.650 14.023 -5.801 15.266 hybrid contribution 0.284 -0.906 0.765 1.219 sum -1.366 13.118 -5.037 14.118 Atomic orbital electron populations 1.21861 0.92325 1.02222 1.02795 1.19602 0.96425 0.96052 0.89973 1.21611 1.00454 0.93530 1.02088 1.21949 1.00884 1.00540 0.96408 1.21486 0.93946 0.89963 0.95051 1.22112 1.02189 0.95574 0.98442 1.19418 0.94965 0.92089 0.94428 1.18849 0.97027 0.91123 0.94417 1.21663 1.14033 0.94769 1.01154 1.22941 0.94683 0.92386 0.95709 1.68649 1.14593 1.38915 1.01019 1.18989 0.89741 0.89103 0.92383 1.20022 1.35704 0.92860 1.01235 0.89109 1.27013 0.93782 0.98473 1.00566 1.70224 1.28512 1.08291 1.30682 0.85120 0.79414 0.77590 0.77069 1.18690 1.19240 1.17784 1.22013 1.11928 0.95317 0.99613 1.22415 1.01902 0.95629 1.00075 1.23049 0.95127 0.91876 0.95465 1.67489 1.10936 1.41022 1.01075 0.93275 0.89571 0.92801 0.93639 0.90828 0.92644 0.92335 0.89606 0.93241 0.83993 0.85366 0.83984 0.90937 0.86746 0.84395 0.79800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.41 71.98 0.61 -1.93 16 2 C -0.02 -0.42 0.87 -52.92 -0.05 -0.47 16 3 C -0.12 -2.32 7.81 71.98 0.56 -1.76 16 4 C -0.14 -2.63 8.08 71.98 0.58 -2.05 16 5 C 0.13 3.78 5.56 42.50 0.24 4.01 16 6 C -0.16 -5.20 8.49 22.58 0.19 -5.01 16 7 C 0.00 -0.05 5.91 -19.84 -0.12 -0.16 16 8 C -0.01 -0.35 5.91 -19.88 -0.12 -0.47 16 9 C -0.29 -12.71 9.54 22.78 0.22 -12.49 16 10 C 0.11 5.14 11.17 84.82 0.95 6.08 16 11 N -0.52 -29.08 7.84 -189.34 -1.49 -30.57 16 12 C 0.22 12.38 6.55 40.21 0.26 12.64 16 13 C -0.47 -25.31 9.14 23.49 0.21 -25.10 16 14 H 0.09 4.56 7.85 -2.91 -0.02 4.54 16 15 C 0.02 1.19 5.50 85.29 0.47 1.66 16 16 N -0.76 -40.81 11.46 21.84 0.25 -40.56 16 17 Si 0.99 37.82 29.56 68.60 2.03 39.85 16 18 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 19 H -0.27 -9.80 7.11 99.48 0.71 -9.09 16 20 H -0.25 -9.33 7.11 99.48 0.71 -8.63 16 21 C -0.27 -13.05 9.25 23.07 0.21 -12.84 16 22 C -0.18 -5.90 9.52 22.58 0.21 -5.68 16 23 C 0.10 2.82 11.17 84.62 0.95 3.76 16 24 N -0.50 -14.47 9.00 -184.13 -1.66 -16.13 16 25 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 27 H 0.05 1.07 8.09 -2.39 -0.02 1.05 16 28 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.05 1.17 7.85 -2.39 -0.02 1.16 16 31 H 0.06 1.13 6.69 -2.39 -0.02 1.11 16 32 H 0.09 1.19 8.14 -2.39 -0.02 1.18 16 33 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.14 4.16 5.07 -2.91 -0.01 4.15 16 35 H 0.13 4.64 6.41 -2.91 -0.02 4.62 16 36 H 0.14 5.96 8.06 -2.91 -0.02 5.94 16 37 H 0.28 13.62 8.29 -92.71 -0.77 12.85 16 38 H 0.11 5.15 6.42 -2.91 -0.02 5.13 16 39 H 0.14 4.35 6.43 -2.91 -0.02 4.33 16 40 H 0.19 3.78 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -64.53 330.13 5.56 -58.98 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 1.04 Total: 28.24 kcal Atomic # 6 Polarization: -45.17 SS G_CDS: 5.38 Total: -39.79 kcal Atomic # 7 Polarization: -84.37 SS G_CDS: -2.89 Total: -87.27 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 2.03 Total: 39.85 kcal Total: -64.53 5.56 -58.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244022798.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.055 kcal (2) G-P(sol) polarization free energy of solvation -64.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds