Wall clock time and date at job start Tue Mar 31 2020 05:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52999 * 109.47085 * 2 1 4 4 C 1.52998 * 109.47060 * 239.99733 * 2 1 3 5 5 C 1.50696 * 109.46658 * 119.99762 * 2 1 3 6 6 C 1.37953 * 119.54825 * 75.00149 * 5 2 1 7 7 C 1.40029 * 118.98756 * 180.02562 * 6 5 2 8 8 C 1.47879 * 120.93870 * 179.97438 * 7 6 5 9 9 C 1.39634 * 120.64395 * 309.97850 * 8 7 6 10 10 C 1.38435 * 118.47637 * 180.02562 * 9 8 7 11 11 C 1.39043 * 119.71045 * 0.02562 * 10 9 8 12 12 N 1.31284 * 121.33175 * 359.97438 * 11 10 9 13 13 C 1.33671 * 121.63763 * 359.97438 * 12 11 10 14 14 C 1.40880 * 119.93337 * 179.97438 * 13 12 11 15 15 H 1.07991 * 120.00227 * 179.97438 * 14 13 12 16 16 C 1.40186 * 119.99801 * 0.02562 * 14 13 12 17 17 N 1.30678 * 119.99958 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00008 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47234 * 0.02562 * 18 16 14 20 20 H 1.48510 * 109.46744 * 120.00256 * 18 16 14 21 21 H 1.48499 * 109.47306 * 239.99934 * 18 16 14 22 22 C 1.40074 * 118.13134 * 0.25516 * 7 6 5 23 23 C 1.37912 * 118.98480 * 359.49790 * 22 7 6 24 24 N 1.31930 * 119.54666 * 255.02006 * 5 2 1 25 25 H 1.08995 * 109.46892 * 300.00262 * 1 2 3 26 26 H 1.08999 * 109.46405 * 60.00630 * 1 2 3 27 27 H 1.09001 * 109.46645 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46832 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46876 * 299.99961 * 3 2 1 30 30 H 1.08998 * 109.47370 * 59.99326 * 3 2 1 31 31 H 1.09001 * 109.47197 * 299.99604 * 4 2 1 32 32 H 1.08993 * 109.47424 * 60.00398 * 4 2 1 33 33 H 1.09004 * 109.46822 * 180.02562 * 4 2 1 34 34 H 1.07999 * 120.50807 * 0.04299 * 6 5 2 35 35 H 1.08004 * 120.76029 * 0.02562 * 9 8 7 36 36 H 1.07995 * 120.14421 * 180.02562 * 10 9 8 37 37 H 1.08003 * 119.33122 * 180.25846 * 11 10 9 38 38 H 0.96997 * 119.99511 * 179.97438 * 17 16 14 39 39 H 1.08000 * 120.51036 * 179.72166 * 22 7 6 40 40 H 1.08003 * 119.54734 * 180.23114 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.9662 -2.0867 1.2961 7 6 2.4357 -2.7347 2.4452 8 6 2.3850 -4.2080 2.5616 9 6 1.2046 -4.9031 2.2911 10 6 1.2074 -6.2820 2.4147 11 6 2.3714 -6.9368 2.8015 12 7 3.4761 -6.2738 3.0536 13 6 3.5338 -4.9423 2.9501 14 6 4.7382 -4.2670 3.2298 15 1 4.7862 -3.1915 3.1462 16 6 5.8747 -4.9915 3.6156 17 7 5.8170 -6.2932 3.7153 18 14 7.4718 -4.0963 3.9857 19 1 7.2755 -2.6361 3.7997 20 1 7.8767 -4.3661 5.3889 21 1 8.5328 -4.5750 3.0636 22 6 2.9492 -1.9477 3.4840 23 6 2.9817 -0.5775 3.3309 24 7 2.5288 -0.0074 2.2304 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6768 -1.7490 -1.2491 32 1 1.6768 -0.2075 -2.1392 33 1 3.1301 -0.7217 -1.2489 34 1 1.5588 -2.6559 0.4736 35 1 0.3099 -4.3771 1.9922 36 1 0.3094 -6.8465 2.2117 37 1 2.3678 -8.0130 2.8920 38 1 6.6034 -6.7945 3.9819 39 1 3.3175 -2.4071 4.3894 40 1 3.3792 0.0378 4.1246 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244023116.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:51 Heat of formation + Delta-G solvation = 47.783773 kcal Electronic energy + Delta-G solvation = -21696.510814 eV Core-core repulsion = 18668.224584 eV Total energy + Delta-G solvation = -3028.286230 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.94949 -38.19720 -36.23902 -33.82248 -32.91133 -30.53172 -29.85036 -29.11584 -27.15005 -27.07044 -25.92453 -23.29140 -23.00000 -21.38753 -20.84445 -18.75473 -17.65228 -16.21061 -15.85302 -15.40567 -14.89275 -14.55083 -14.35123 -14.16945 -14.00595 -13.60803 -13.31609 -12.88573 -12.68066 -12.28362 -12.08761 -12.00333 -11.89564 -11.61182 -11.48295 -11.32738 -11.21713 -10.94718 -10.80900 -10.78441 -10.59594 -10.46537 -10.12463 -9.55052 -9.14187 -8.79641 -8.32748 -8.19995 -7.73387 -7.55808 -6.58826 -4.68473 1.78767 1.79108 2.65524 2.94207 3.00772 3.05643 3.10963 3.82268 4.42501 4.56696 4.60347 4.93252 5.19035 5.28593 5.47226 5.55389 5.69606 5.72374 5.76482 5.84703 5.89569 5.92564 5.96903 6.00896 6.03265 6.05395 6.14116 6.20496 6.36311 6.39134 6.44994 6.49725 6.55739 6.70719 6.76833 6.96039 7.06495 7.19894 7.35514 7.48686 7.60830 7.87731 8.08916 8.46381 8.61912 8.75150 9.92549 10.11642 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.015959 B = 0.005989 C = 0.004811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.038184 B = 4674.372120 C = 5818.438191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.016 4.016 3 C -0.123 4.123 4 C -0.140 4.140 5 C 0.131 3.869 6 C -0.179 4.179 7 C 0.071 3.929 8 C -0.247 4.247 9 C -0.026 4.026 10 C -0.321 4.321 11 C 0.136 3.864 12 N -0.481 5.481 13 C 0.270 3.730 14 C -0.417 4.417 15 H 0.094 0.906 16 C 0.068 3.932 17 N -0.704 5.704 18 Si 0.904 3.096 19 H -0.257 1.257 20 H -0.270 1.270 21 H -0.271 1.271 22 C -0.168 4.168 23 C 0.088 3.912 24 N -0.503 5.503 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.123 0.877 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.120 0.880 38 H 0.276 0.724 39 H 0.135 0.865 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.789 8.138 -4.231 10.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.017 4.017 3 C -0.180 4.180 4 C -0.198 4.198 5 C -0.007 4.007 6 C -0.199 4.199 7 C 0.063 3.937 8 C -0.252 4.252 9 C -0.051 4.051 10 C -0.344 4.344 11 C -0.033 4.033 12 N -0.192 5.192 13 C 0.147 3.853 14 C -0.447 4.447 15 H 0.112 0.888 16 C -0.159 4.159 17 N -0.324 5.324 18 Si 0.727 3.273 19 H -0.180 1.180 20 H -0.195 1.195 21 H -0.196 1.196 22 C -0.188 4.188 23 C -0.067 4.067 24 N -0.213 5.213 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.141 0.859 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.138 0.862 38 H 0.087 0.913 39 H 0.153 0.847 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.809 8.451 -3.967 10.082 hybrid contribution -0.088 -0.405 0.063 0.419 sum -3.897 8.046 -3.904 9.755 Atomic orbital electron populations 1.21847 0.93778 1.01982 1.01654 1.19401 0.95339 0.95633 0.91345 1.21631 1.01124 0.94253 1.01024 1.21928 1.01455 1.00391 0.96021 1.20766 0.95639 0.90321 0.93973 1.21976 1.04462 0.94656 0.98779 1.19038 0.90225 0.93167 0.91294 1.19259 0.96608 0.90481 1.18829 1.20872 0.95505 0.93884 0.94840 1.21237 0.99788 0.94590 1.18810 1.22645 0.89134 0.98858 0.92645 1.68775 1.24272 1.07808 1.18374 1.18500 0.91082 0.87848 0.87902 1.19898 0.93018 0.95387 1.36399 0.88823 1.26171 1.00863 0.94845 0.94068 1.70107 1.29427 1.06781 1.26112 0.86303 0.80915 0.81098 0.78958 1.18018 1.19505 1.19577 1.22358 1.01685 0.94221 1.00487 1.22448 0.96767 0.92572 0.94889 1.67298 1.12033 1.40938 1.01009 0.92584 0.92353 0.92499 0.92738 0.93530 0.91839 0.92156 0.92363 0.92432 0.85905 0.88526 0.88513 0.86204 0.91311 0.84666 0.83757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 8.40 37.16 0.31 -1.32 16 2 C -0.02 -0.22 0.87 -155.66 -0.14 -0.36 16 3 C -0.12 -1.58 7.80 37.16 0.29 -1.29 16 4 C -0.14 -1.78 8.08 37.16 0.30 -1.48 16 5 C 0.13 2.26 5.56 -82.66 -0.46 1.80 16 6 C -0.18 -3.35 8.64 -39.01 -0.34 -3.69 16 7 C 0.07 1.50 5.03 -104.59 -0.53 0.97 16 8 C -0.25 -5.79 5.58 -104.08 -0.58 -6.37 16 9 C -0.03 -0.57 9.70 -38.99 -0.38 -0.95 16 10 C -0.32 -6.91 10.11 -39.21 -0.40 -7.31 16 11 C 0.14 3.18 11.17 -17.49 -0.20 2.98 16 12 N -0.48 -12.78 7.85 -10.91 -0.09 -12.87 16 13 C 0.27 7.05 6.56 -84.72 -0.56 6.50 16 14 C -0.42 -10.64 8.03 -37.85 -0.30 -10.95 16 15 H 0.09 2.29 5.27 -52.49 -0.28 2.01 16 16 C 0.07 1.65 5.50 -17.31 -0.10 1.56 16 17 N -0.70 -17.99 11.46 55.56 0.64 -17.35 16 18 Si 0.90 18.06 29.56 -169.99 -5.02 13.04 16 19 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 20 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 21 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 22 C -0.17 -3.31 7.69 -39.01 -0.30 -3.61 16 23 C 0.09 1.57 11.17 -17.62 -0.20 1.37 16 24 N -0.50 -9.02 9.00 -9.58 -0.09 -9.11 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.86 7.85 -51.93 -0.41 0.45 16 31 H 0.06 0.77 6.69 -51.93 -0.35 0.43 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.12 2.17 6.72 -52.49 -0.35 1.82 16 35 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 36 H 0.10 1.81 8.06 -52.49 -0.42 1.38 16 37 H 0.12 2.46 8.06 -52.48 -0.42 2.04 16 38 H 0.28 6.34 8.29 -40.82 -0.34 6.00 16 39 H 0.14 2.70 7.33 -52.49 -0.38 2.32 16 40 H 0.15 2.12 8.06 -52.48 -0.42 1.70 16 LS Contribution 330.42 15.07 4.98 4.98 Total: -1.00 -28.06 330.42 -8.69 -36.75 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -5.55 Total: 6.70 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -3.56 Total: -22.14 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.46 Total: -39.33 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.02 Total: 13.04 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.06 -8.69 -36.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244023116.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.537 kcal (2) G-P(sol) polarization free energy of solvation -28.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds