Wall clock time and date at job start Tue Mar 31 2020 05:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46833 * 2 1 4 4 C 1.52998 * 109.47161 * 240.00036 * 2 1 3 5 5 C 1.50706 * 109.47254 * 119.99728 * 2 1 3 6 6 C 1.38034 * 119.55496 * 75.00305 * 5 2 1 7 7 C 1.39736 * 119.01569 * 180.02562 * 6 5 2 8 8 C 1.48394 * 120.90635 * 180.02562 * 7 6 5 9 9 C 1.38852 * 119.60887 * 179.97438 * 8 7 6 10 10 C 1.40886 * 118.76493 * 179.72120 * 9 8 7 11 11 C 1.41513 * 120.99144 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00356 * 336.11825 * 11 10 9 13 13 C 1.40049 * 120.00045 * 156.12152 * 11 10 9 14 14 N 1.30734 * 119.99888 * 343.17276 * 13 11 10 15 15 Si 1.86800 * 120.00249 * 163.17513 * 13 11 10 16 16 H 1.48504 * 109.47284 * 59.99684 * 15 13 11 17 17 H 1.48503 * 109.47484 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46826 * 299.99967 * 15 13 11 19 19 C 1.41125 * 118.01900 * 0.02562 * 10 9 8 20 20 C 1.37787 * 119.06286 * 0.02562 * 19 10 9 21 21 N 1.31885 * 121.15487 * 0.02562 * 20 19 10 22 22 C 1.39764 * 118.18640 * 0.26904 * 7 6 5 23 23 C 1.37995 * 119.02877 * 359.48284 * 22 7 6 24 24 N 1.31889 * 119.55776 * 255.02676 * 5 2 1 25 25 H 1.08996 * 109.47093 * 299.99923 * 1 2 3 26 26 H 1.08994 * 109.47498 * 60.00357 * 1 2 3 27 27 H 1.09003 * 109.46800 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46676 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.46934 * 299.99567 * 3 2 1 30 30 H 1.08996 * 109.47218 * 60.00153 * 3 2 1 31 31 H 1.08999 * 109.47175 * 299.99207 * 4 2 1 32 32 H 1.08996 * 109.47580 * 59.99836 * 4 2 1 33 33 H 1.09001 * 109.46787 * 179.97438 * 4 2 1 34 34 H 1.07993 * 120.49346 * 359.97438 * 6 5 2 35 35 H 1.07999 * 120.61895 * 359.70339 * 9 8 7 36 36 H 0.97005 * 119.99560 * 180.02562 * 14 13 11 37 37 H 1.07998 * 120.46578 * 179.97438 * 19 10 9 38 38 H 1.07993 * 119.42196 * 179.97438 * 20 19 10 39 39 H 1.08001 * 120.49041 * 179.72499 * 22 7 6 40 40 H 1.07996 * 119.56231 * 180.26698 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2305 6 6 1.9664 -2.0876 1.2963 7 6 2.4349 -2.7346 2.4428 8 6 2.3846 -4.2132 2.5579 9 6 2.8581 -4.8282 3.7092 10 6 2.7964 -6.2327 3.8020 11 6 3.2660 -6.9082 4.9534 12 1 4.0038 -6.4421 5.5897 13 6 2.7741 -8.1812 5.2679 14 7 1.6701 -8.6104 4.7145 15 14 3.6953 -9.2659 6.4779 16 1 3.7809 -8.5797 7.7921 17 1 2.9726 -10.5532 6.6384 18 1 5.0646 -9.5268 5.9656 19 6 2.2532 -6.9458 2.7121 20 6 1.8092 -6.2480 1.6101 21 7 1.8847 -4.9323 1.5597 22 6 2.9474 -1.9508 3.4803 23 6 2.9810 -0.5795 3.3298 24 7 2.5287 -0.0078 2.2303 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6768 -1.7489 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7208 -1.2494 34 1 1.5580 -2.6565 0.4743 35 1 3.2664 -4.2409 4.5184 36 1 1.3292 -9.4920 4.9327 37 1 2.1873 -8.0234 2.7411 38 1 1.3930 -6.7880 0.7726 39 1 3.3154 -2.4118 4.3850 40 1 3.3792 0.0341 4.1243 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244023220.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:37 Heat of formation + Delta-G solvation = 37.262061 kcal Electronic energy + Delta-G solvation = -21042.874413 eV Core-core repulsion = 18014.131927 eV Total energy + Delta-G solvation = -3028.742486 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.17629 -38.34992 -36.38931 -34.34828 -32.65024 -30.96995 -30.03229 -28.89902 -27.19925 -27.12292 -26.09784 -23.76204 -23.10545 -21.45339 -20.88571 -19.12465 -17.52443 -16.19879 -15.93016 -15.36468 -15.26319 -14.41866 -14.37897 -14.30068 -14.07292 -13.67997 -13.52785 -13.27090 -12.72412 -12.47144 -12.32666 -12.14811 -12.00739 -11.75691 -11.55361 -11.53969 -11.31214 -11.01059 -10.87995 -10.87090 -10.62558 -10.43476 -10.00655 -9.65945 -9.43087 -9.05482 -8.57033 -8.19975 -8.13921 -7.45460 -6.97279 -4.72550 1.35331 1.55185 2.64765 2.85913 2.95250 2.97472 3.17667 3.76263 4.18709 4.40777 4.58162 4.79926 4.98951 5.10602 5.18335 5.33048 5.54297 5.55775 5.57647 5.67321 5.75302 5.84463 5.87146 5.92173 5.94993 5.98894 6.05930 6.21958 6.26715 6.36037 6.38653 6.50956 6.54772 6.67140 6.75856 6.97622 7.01205 7.09596 7.22026 7.31664 7.71005 7.94653 8.30506 8.36464 8.58512 8.60599 9.40765 9.94805 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.033148 B = 0.003663 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.495014 B = 7643.036728 C = 8230.895016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.016 4.016 3 C -0.124 4.124 4 C -0.142 4.142 5 C 0.126 3.874 6 C -0.141 4.141 7 C 0.033 3.967 8 C 0.142 3.858 9 C -0.243 4.243 10 C 0.125 3.875 11 C -0.455 4.455 12 H 0.083 0.917 13 C 0.078 3.922 14 N -0.784 5.784 15 Si 0.914 3.086 16 H -0.263 1.263 17 H -0.276 1.276 18 H -0.261 1.261 19 C -0.205 4.205 20 C 0.088 3.912 21 N -0.559 5.559 22 C -0.171 4.171 23 C 0.092 3.908 24 N -0.491 5.491 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.141 0.859 35 H 0.106 0.894 36 H 0.285 0.715 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.136 0.864 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.184 9.948 -4.960 11.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.017 4.017 3 C -0.181 4.181 4 C -0.199 4.199 5 C -0.011 4.011 6 C -0.161 4.161 7 C 0.024 3.976 8 C 0.009 3.991 9 C -0.267 4.267 10 C 0.117 3.883 11 C -0.485 4.485 12 H 0.101 0.899 13 C -0.142 4.142 14 N -0.408 5.408 15 Si 0.738 3.262 16 H -0.188 1.188 17 H -0.201 1.201 18 H -0.186 1.186 19 C -0.227 4.227 20 C -0.065 4.065 21 N -0.274 5.274 22 C -0.192 4.192 23 C -0.065 4.065 24 N -0.201 5.201 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.159 0.841 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.146 0.854 38 H 0.142 0.858 39 H 0.154 0.846 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.270 11.074 -5.797 12.502 hybrid contribution 0.606 -2.173 1.614 2.774 sum 0.336 8.901 -4.183 9.840 Atomic orbital electron populations 1.21864 0.93493 1.02326 1.01779 1.19423 0.95587 0.95600 0.91099 1.21645 1.01033 0.94209 1.01220 1.21944 1.01274 1.00720 0.95986 1.20971 0.95534 0.90439 0.94144 1.22044 1.00582 0.94327 0.99137 1.19187 0.93153 0.92474 0.92764 1.18978 0.98228 0.90275 0.91620 1.21879 1.10913 0.95164 0.98723 1.17766 0.87893 0.90354 0.92295 1.19589 1.21256 1.00045 1.07657 0.89912 1.25987 0.93715 0.98033 0.96510 1.69748 1.15729 1.18783 1.36585 0.86264 0.80550 0.78788 0.80623 1.18758 1.20103 1.18583 1.22308 1.05675 1.01116 0.93646 1.21972 0.97924 0.89612 0.96975 1.67215 1.22426 1.08145 1.29619 1.22250 1.01968 0.94827 1.00111 1.22490 0.96750 0.92196 0.95022 1.67325 1.10941 1.41013 1.00805 0.92561 0.92162 0.92201 0.92771 0.93319 0.91812 0.91782 0.92187 0.92553 0.84079 0.87603 0.90338 0.85416 0.85803 0.84637 0.83180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.40 37.16 0.31 -1.30 16 2 C -0.02 -0.21 0.87 -155.66 -0.14 -0.35 16 3 C -0.12 -1.45 7.81 37.16 0.29 -1.16 16 4 C -0.14 -1.67 8.08 37.16 0.30 -1.37 16 5 C 0.13 2.03 5.56 -82.64 -0.46 1.57 16 6 C -0.14 -2.54 8.61 -39.10 -0.34 -2.87 16 7 C 0.03 0.65 5.91 -104.59 -0.62 0.03 16 8 C 0.14 3.27 6.73 -83.04 -0.56 2.71 16 9 C -0.24 -5.79 9.27 -38.35 -0.36 -6.15 16 10 C 0.12 3.20 5.60 -106.55 -0.60 2.60 16 11 C -0.45 -11.42 9.12 -37.66 -0.34 -11.76 16 12 H 0.08 1.97 7.90 -52.48 -0.41 1.56 16 13 C 0.08 1.84 5.20 -17.34 -0.09 1.75 16 14 N -0.78 -19.12 10.92 55.55 0.61 -18.51 16 15 Si 0.91 17.56 29.59 -169.99 -5.03 12.52 16 16 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 17 H -0.28 -5.17 7.11 56.52 0.40 -4.76 16 18 H -0.26 -5.00 7.11 56.52 0.40 -4.59 16 19 C -0.21 -5.12 8.79 -38.65 -0.34 -5.46 16 20 C 0.09 2.04 11.15 -17.69 -0.20 1.84 16 21 N -0.56 -13.13 9.50 -9.94 -0.09 -13.23 16 22 C -0.17 -2.95 9.49 -39.10 -0.37 -3.32 16 23 C 0.09 1.41 11.17 -17.60 -0.20 1.22 16 24 N -0.49 -7.98 9.00 -9.55 -0.09 -8.06 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.79 7.85 -51.93 -0.41 0.38 16 31 H 0.06 0.79 6.70 -51.93 -0.35 0.45 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.14 2.56 6.30 -52.49 -0.33 2.23 16 35 H 0.11 2.30 6.27 -52.49 -0.33 1.97 16 36 H 0.29 6.31 8.29 -40.82 -0.34 5.97 16 37 H 0.13 3.22 6.20 -52.49 -0.33 2.89 16 38 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 39 H 0.14 2.18 6.31 -52.49 -0.33 1.85 16 40 H 0.15 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 330.98 15.07 4.99 4.99 Total: -1.00 -27.30 330.98 -8.74 -36.03 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -5.42 Total: 8.27 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -3.70 Total: -22.01 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.43 Total: -39.80 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.52 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.30 -8.74 -36.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244023220.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.295 kcal (2) G-P(sol) polarization free energy of solvation -27.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds