Wall clock time and date at job start Tue Mar 31 2020 05:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47213 * 2 1 4 4 C 1.50703 * 109.47035 * 239.99531 * 2 1 3 5 5 C 1.38446 * 119.85453 * 59.73009 * 4 2 1 6 6 C 1.38095 * 120.33477 * 179.72113 * 5 4 2 7 7 C 1.38821 * 120.04279 * 0.55219 * 6 5 4 8 8 N 1.39362 * 120.14032 * 179.70712 * 7 6 5 9 9 C 1.40010 * 119.71504 * 359.72341 * 7 6 5 10 10 C 1.48216 * 120.17134 * 180.02562 * 9 7 6 11 11 C 1.38991 * 119.62416 * 131.25389 * 10 9 7 12 12 C 1.40807 * 118.75652 * 180.02562 * 11 10 9 13 13 C 1.41533 * 120.98342 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00490 * 156.73953 * 13 12 11 15 15 C 1.40049 * 119.99922 * 336.73394 * 13 12 11 16 16 N 1.30739 * 119.99660 * 344.79237 * 15 13 12 17 17 Si 1.86793 * 119.99998 * 164.79435 * 15 13 12 18 18 H 1.48503 * 109.47258 * 90.00323 * 17 15 13 19 19 H 1.48501 * 109.46989 * 209.99940 * 17 15 13 20 20 H 1.48504 * 109.47388 * 330.00125 * 17 15 13 21 21 C 1.41163 * 118.03418 * 359.97438 * 12 11 10 22 22 C 1.37706 * 119.09053 * 0.02562 * 21 12 11 23 23 N 1.31935 * 121.16587 * 359.72449 * 22 21 12 24 24 C 1.37971 * 119.85216 * 240.00346 * 4 2 1 25 25 H 1.09000 * 109.47479 * 180.02562 * 1 2 3 26 26 H 1.09011 * 109.46845 * 59.99978 * 1 2 3 27 27 H 1.08996 * 109.47348 * 300.00814 * 1 2 3 28 28 H 1.08996 * 109.46613 * 119.99570 * 2 1 3 29 29 H 1.09002 * 109.47540 * 59.99779 * 3 2 1 30 30 H 1.09004 * 109.46800 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.46980 * 299.99345 * 3 2 1 32 32 H 1.07999 * 119.83252 * 0.02562 * 5 4 2 33 33 H 1.08000 * 119.97929 * 180.25812 * 6 5 4 34 34 H 0.97008 * 119.99669 * 182.38171 * 8 7 6 35 35 H 0.96995 * 120.00580 * 2.38079 * 8 7 6 36 36 H 1.07999 * 120.62201 * 359.97139 * 11 10 9 37 37 H 0.97005 * 119.99850 * 179.97438 * 16 15 13 38 38 H 1.08004 * 120.45389 * 179.97438 * 21 12 11 39 39 H 1.08005 * 119.41765 * 180.02562 * 22 21 12 40 40 H 1.07996 * 120.02740 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 6 1.6914 -0.2383 -2.4864 6 6 2.1509 -0.8783 -3.6206 7 6 2.9496 -2.0079 -3.5058 8 7 3.4094 -2.6589 -4.6490 9 6 3.2908 -2.4905 -2.2366 10 6 4.1434 -3.6955 -2.1022 11 6 5.2383 -3.6704 -1.2464 12 6 6.0362 -4.8251 -1.1333 13 6 7.1624 -4.8514 -0.2764 14 1 7.5362 -5.7940 0.0953 15 6 7.7921 -3.6552 0.0894 16 7 7.5447 -2.5566 -0.5749 17 14 8.9853 -3.6292 1.5263 18 1 10.3579 -3.9117 1.0351 19 1 8.9556 -2.2914 2.1703 20 1 8.5910 -4.6639 2.5160 21 6 5.6797 -5.9557 -1.8997 22 6 4.5765 -5.8869 -2.7211 23 7 3.8496 -4.7885 -2.7975 24 6 2.8253 -1.8321 -1.1002 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 0.5139 0.8899 28 1 1.8932 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.0670 0.6379 -2.5797 33 1 1.8848 -0.5025 -4.5975 34 1 3.9385 -3.4678 -4.5668 35 1 3.2003 -2.3033 -5.5269 36 1 5.4733 -2.7817 -0.6795 37 1 7.9806 -1.7279 -0.3213 38 1 6.2645 -6.8619 -1.8433 39 1 4.2987 -6.7489 -3.3095 40 1 3.0853 -2.1991 -0.1184 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244206286.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:30 Heat of formation + Delta-G solvation = 26.003546 kcal Electronic energy + Delta-G solvation = -21428.724890 eV Core-core repulsion = 18399.494198 eV Total energy + Delta-G solvation = -3029.230692 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.39825 -37.97628 -35.76939 -34.12934 -32.75390 -31.57353 -30.52366 -28.61927 -27.13577 -26.94943 -25.94563 -23.06310 -22.24688 -21.35971 -20.91391 -19.13950 -17.40221 -16.46893 -16.30414 -15.59411 -15.08370 -14.43165 -14.32541 -14.25425 -13.88995 -13.34722 -13.21826 -13.10435 -12.71877 -12.45726 -12.41328 -12.29460 -12.09650 -11.93975 -11.45402 -11.20996 -11.02859 -10.95827 -10.88957 -10.48581 -10.33203 -10.30202 -9.82054 -9.78396 -9.46698 -8.53293 -8.03770 -7.99677 -7.52024 -6.86293 -6.65849 -4.63397 1.84249 2.19088 2.73985 2.83296 3.00197 3.04169 3.20725 3.82540 4.37819 4.54919 4.63838 5.03910 5.10710 5.39898 5.45238 5.46311 5.58271 5.69840 5.76561 5.84103 5.95671 5.97843 6.01091 6.14854 6.21539 6.35309 6.42915 6.45098 6.58670 6.71927 6.81345 6.84063 6.91819 7.04796 7.13673 7.27337 7.33826 7.44072 7.48743 7.84827 8.08167 8.13795 8.39895 8.46912 8.70801 8.71128 9.54295 10.03496 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014051 B = 0.005748 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.327607 B = 4870.424550 C = 6186.070614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.047 4.047 3 C -0.142 4.142 4 C -0.146 4.146 5 C -0.072 4.072 6 C -0.211 4.211 7 C 0.240 3.760 8 N -0.867 5.867 9 C -0.083 4.083 10 C 0.146 3.854 11 C -0.190 4.190 12 C 0.125 3.875 13 C -0.453 4.453 14 H 0.081 0.919 15 C 0.076 3.924 16 N -0.782 5.782 17 Si 0.911 3.089 18 H -0.268 1.268 19 H -0.274 1.274 20 H -0.259 1.259 21 C -0.276 4.276 22 C 0.100 3.900 23 N -0.571 5.571 24 C -0.053 4.053 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.408 0.592 35 H 0.386 0.614 36 H 0.132 0.868 37 H 0.284 0.716 38 H 0.099 0.901 39 H 0.120 0.880 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.440 6.159 -0.835 9.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.065 4.065 3 C -0.199 4.199 4 C -0.148 4.148 5 C -0.091 4.091 6 C -0.234 4.234 7 C 0.133 3.867 8 N -0.406 5.406 9 C -0.089 4.089 10 C 0.016 3.984 11 C -0.212 4.212 12 C 0.117 3.883 13 C -0.484 4.484 14 H 0.099 0.901 15 C -0.144 4.144 16 N -0.407 5.407 17 Si 0.735 3.265 18 H -0.193 1.193 19 H -0.199 1.199 20 H -0.183 1.183 21 C -0.300 4.300 22 C -0.055 4.055 23 N -0.287 5.287 24 C -0.072 4.072 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.241 0.759 35 H 0.213 0.787 36 H 0.149 0.851 37 H 0.095 0.905 38 H 0.118 0.882 39 H 0.138 0.862 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.106 6.414 -1.389 10.430 hybrid contribution 1.601 -0.214 0.773 1.790 sum -6.505 6.200 -0.616 9.008 Atomic orbital electron populations 1.21850 0.95223 1.01704 1.01070 1.19933 0.95136 0.95558 0.95889 1.21848 1.01411 0.95618 1.01020 1.19310 1.03222 0.98148 0.94096 1.20503 0.98606 0.98476 0.91541 1.20361 1.05754 0.98886 0.98423 1.17723 0.91203 0.90770 0.87043 1.42596 1.61255 1.32040 1.04676 1.18166 1.02438 0.96983 0.91278 1.19228 0.93276 0.90651 0.95235 1.22294 0.95269 1.01140 1.02545 1.17796 0.91090 0.90533 0.88875 1.19617 1.10286 0.93771 1.24764 0.90066 1.25991 0.97037 0.94912 0.96429 1.69762 1.35880 1.00859 1.34205 0.86259 0.80199 0.78858 0.81193 1.19328 1.19869 1.18312 1.21881 1.02719 1.00674 1.04680 1.21822 0.92161 0.94820 0.96730 1.67369 1.32735 1.00030 1.28526 1.20839 0.95143 0.93843 0.97417 0.92681 0.92810 0.93143 0.90990 0.93155 0.92504 0.92829 0.87116 0.87011 0.75893 0.78709 0.85058 0.90499 0.88239 0.86215 0.86469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.00 37.16 0.33 -1.30 16 2 C -0.05 -0.63 3.09 -91.77 -0.28 -0.91 16 3 C -0.14 -1.70 9.01 37.15 0.33 -1.37 16 4 C -0.15 -2.38 4.78 -104.64 -0.50 -2.88 16 5 C -0.07 -1.12 8.69 -39.56 -0.34 -1.46 16 6 C -0.21 -3.45 9.88 -39.42 -0.39 -3.84 16 7 C 0.24 4.59 6.74 -83.56 -0.56 4.03 16 8 N -0.87 -15.21 8.94 32.55 0.29 -14.92 16 9 C -0.08 -1.78 5.61 -104.72 -0.59 -2.37 16 10 C 0.15 3.52 5.78 -83.05 -0.48 3.04 16 11 C -0.19 -4.91 8.19 -38.33 -0.31 -5.22 16 12 C 0.12 3.28 5.62 -106.56 -0.60 2.68 16 13 C -0.45 -11.68 9.13 -37.65 -0.34 -12.03 16 14 H 0.08 2.00 7.89 -52.49 -0.41 1.58 16 15 C 0.08 1.85 5.24 -17.34 -0.09 1.76 16 16 N -0.78 -19.68 10.79 55.55 0.60 -19.08 16 17 Si 0.91 18.06 29.59 -169.99 -5.03 13.03 16 18 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 19 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 20 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 21 C -0.28 -6.64 9.90 -38.67 -0.38 -7.02 16 22 C 0.10 2.25 11.15 -17.70 -0.20 2.05 16 23 N -0.57 -13.39 8.49 -9.96 -0.08 -13.48 16 24 C -0.05 -1.03 9.07 -39.27 -0.36 -1.38 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.59 7.36 -51.92 -0.38 0.20 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.98 7.86 -51.93 -0.41 0.58 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.60 7.39 -51.93 -0.38 0.22 16 32 H 0.11 1.42 7.07 -52.49 -0.37 1.04 16 33 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.41 7.95 6.46 -40.82 -0.26 7.69 16 35 H 0.39 5.39 8.84 -40.82 -0.36 5.02 16 36 H 0.13 3.51 6.04 -52.49 -0.32 3.19 16 37 H 0.28 6.51 8.29 -40.82 -0.34 6.17 16 38 H 0.10 2.21 8.06 -52.48 -0.42 1.78 16 39 H 0.12 2.30 8.06 -52.48 -0.42 1.88 16 40 H 0.12 2.28 7.88 -52.49 -0.41 1.86 16 LS Contribution 331.83 15.07 5.00 5.00 Total: -1.00 -27.66 331.83 -9.39 -37.05 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: -5.41 Total: 18.63 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: -4.76 Total: -26.23 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: 0.81 Total: -47.48 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.66 -9.39 -37.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244206286.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.055 kcal (2) G-P(sol) polarization free energy of solvation -27.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds