Wall clock time and date at job start Tue Mar 31 2020 05:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46895 * 2 1 4 4 C 1.50700 * 109.47026 * 119.99848 * 2 1 3 5 5 C 1.38569 * 119.83696 * 299.72724 * 4 2 1 6 6 C 1.38075 * 120.40289 * 180.27933 * 5 4 2 7 7 C 1.38822 * 120.06538 * 359.97438 * 6 5 4 8 8 N 1.39159 * 120.16732 * 179.97438 * 7 6 5 9 9 C 1.40353 * 119.66979 * 0.02562 * 7 6 5 10 10 C 1.47730 * 120.19886 * 179.97438 * 9 7 6 11 11 C 1.40019 * 119.46008 * 226.93357 * 10 9 7 12 12 C 1.36530 * 119.46384 * 179.97438 * 11 10 9 13 13 C 1.41349 * 118.42352 * 0.02562 * 12 11 10 14 14 C 1.41006 * 120.54462 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00017 * 329.14293 * 14 13 12 16 16 C 1.39985 * 120.00516 * 149.14752 * 14 13 12 17 17 N 1.30818 * 120.00352 * 164.00967 * 16 14 13 18 18 Si 1.86801 * 119.99582 * 344.00762 * 16 14 13 19 19 H 1.48496 * 109.47496 * 90.52318 * 18 16 14 20 20 H 1.48504 * 109.46898 * 210.52290 * 18 16 14 21 21 H 1.48503 * 109.47192 * 330.51721 * 18 16 14 22 22 C 1.40960 * 118.91209 * 359.97438 * 13 12 11 23 23 N 1.31259 * 120.40532 * 359.72770 * 22 13 12 24 24 C 1.37833 * 119.82900 * 119.99754 * 4 2 1 25 25 H 1.09000 * 109.47614 * 300.00072 * 1 2 3 26 26 H 1.09007 * 109.47425 * 59.99971 * 1 2 3 27 27 H 1.09001 * 109.47277 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46825 * 240.00371 * 2 1 3 29 29 H 1.08995 * 109.46907 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.46950 * 299.99992 * 3 2 1 31 31 H 1.09006 * 109.46942 * 59.99988 * 3 2 1 32 32 H 1.08003 * 119.80041 * 0.28189 * 5 4 2 33 33 H 1.08005 * 119.96848 * 179.97438 * 6 5 4 34 34 H 0.96999 * 119.99819 * 185.80732 * 8 7 6 35 35 H 0.97003 * 119.99718 * 5.81627 * 8 7 6 36 36 H 1.07996 * 120.26916 * 0.02569 * 11 10 9 37 37 H 1.07992 * 120.79025 * 180.02562 * 12 11 10 38 38 H 0.96997 * 119.99566 * 180.02562 * 17 16 14 39 39 H 1.07991 * 119.79748 * 180.02562 * 22 13 12 40 40 H 1.07999 * 120.03907 * 359.74651 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.7002 -0.2307 2.4874 6 6 2.1587 -0.8691 3.6225 7 6 2.9573 -1.9990 3.5104 8 7 3.4211 -2.6438 4.6531 9 6 3.2955 -2.4874 2.2388 10 6 4.1451 -3.6886 2.1059 11 6 5.2216 -3.6752 1.2106 12 6 6.0071 -4.7851 1.0881 13 6 5.7003 -5.9169 1.8773 14 6 6.4816 -7.0872 1.7862 15 1 6.9587 -7.3466 0.8526 16 6 6.6387 -7.9129 2.9056 17 7 7.0854 -9.1339 2.7603 18 14 6.2106 -7.2713 4.6069 19 1 4.7880 -7.5740 4.9066 20 1 7.0797 -7.9274 5.6165 21 1 6.4239 -5.8023 4.6500 22 6 4.6005 -5.8565 2.7569 23 7 3.8783 -4.7639 2.8435 24 6 2.8245 -1.8308 1.1000 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.0788 0.6478 2.5796 33 1 1.8959 -0.4889 4.5987 34 1 4.0463 -3.3811 4.5740 35 1 3.1190 -2.3558 5.5288 36 1 5.4293 -2.7936 0.6223 37 1 6.8430 -4.7980 0.4045 38 1 7.1939 -9.7060 3.5360 39 1 4.3535 -6.7128 3.3669 40 1 3.0807 -2.2003 0.1181 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244207023.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:35 Heat of formation + Delta-G solvation = 28.348698 kcal Electronic energy + Delta-G solvation = -21192.521776 eV Core-core repulsion = 18163.392777 eV Total energy + Delta-G solvation = -3029.128998 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.56025 -38.29855 -35.91762 -34.05160 -32.89641 -31.77097 -31.21993 -29.48340 -27.66733 -27.06998 -25.34678 -22.71164 -22.65757 -21.77435 -21.03263 -19.22054 -17.78270 -16.75464 -16.51683 -16.07653 -15.30522 -14.78383 -14.67237 -14.12386 -13.77285 -13.48114 -13.42959 -13.23240 -13.06564 -12.71856 -12.44328 -12.41358 -12.23862 -12.10594 -11.87015 -11.22478 -11.14911 -11.04780 -10.89246 -10.69839 -10.50955 -10.39492 -10.09224 -9.91867 -9.48108 -8.72874 -8.58421 -8.17522 -7.71282 -7.18114 -6.83221 -4.68225 1.67095 2.05626 2.45123 2.55767 2.99538 3.09073 3.15128 3.78449 4.19476 4.45138 4.45376 4.91736 4.98488 5.25149 5.31535 5.33285 5.37804 5.55638 5.65160 5.71418 5.81222 5.83010 5.86666 6.00341 6.06273 6.18305 6.21855 6.30103 6.31968 6.38216 6.46943 6.51986 6.73007 6.84168 6.90694 7.01547 7.13056 7.27065 7.43068 7.46512 7.80646 8.03713 8.04480 8.29831 8.34867 8.48420 9.29480 9.82501 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.029441 B = 0.004226 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.810421 B = 6623.895269 C = 7236.264809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.047 4.047 3 C -0.142 4.142 4 C -0.143 4.143 5 C -0.078 4.078 6 C -0.207 4.207 7 C 0.232 3.768 8 N -0.866 5.866 9 C -0.068 4.068 10 C 0.012 3.988 11 C -0.106 4.106 12 C -0.179 4.179 13 C 0.046 3.954 14 C -0.426 4.426 15 H 0.095 0.905 16 C 0.081 3.919 17 N -0.794 5.794 18 Si 0.915 3.085 19 H -0.262 1.262 20 H -0.287 1.287 21 H -0.249 1.249 22 C -0.035 4.035 23 N -0.442 5.442 24 C -0.066 4.066 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.405 0.595 35 H 0.388 0.612 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.290 0.710 39 H 0.134 0.866 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.324 14.061 0.185 15.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.065 4.065 3 C -0.199 4.199 4 C -0.145 4.145 5 C -0.097 4.097 6 C -0.230 4.230 7 C 0.125 3.875 8 N -0.404 5.404 9 C -0.074 4.074 10 C -0.123 4.123 11 C -0.126 4.126 12 C -0.205 4.205 13 C 0.041 3.959 14 C -0.454 4.454 15 H 0.113 0.887 16 C -0.140 4.140 17 N -0.416 5.416 18 Si 0.741 3.259 19 H -0.188 1.188 20 H -0.214 1.214 21 H -0.173 1.173 22 C -0.198 4.198 23 N -0.150 5.150 24 C -0.086 4.086 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.237 0.763 35 H 0.215 0.785 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.101 0.899 39 H 0.151 0.849 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.890 13.805 0.785 15.920 hybrid contribution 0.794 -0.294 0.474 0.971 sum -7.096 13.511 1.259 15.313 Atomic orbital electron populations 1.21852 0.95150 1.01798 1.01133 1.19940 0.95274 0.95483 0.95816 1.21850 1.01193 0.95692 1.01154 1.19314 1.03027 0.98128 0.94060 1.20514 0.98932 0.98689 0.91520 1.20376 1.05943 0.98248 0.98437 1.17812 0.92018 0.90561 0.87147 1.42495 1.52804 1.40136 1.04998 1.18050 1.02258 0.96019 0.91041 1.18797 0.98808 0.92907 1.01837 1.21276 0.95510 0.97980 0.97875 1.21072 1.01375 0.92974 1.05054 1.18677 0.92256 0.92893 0.92117 1.19479 1.25059 1.01801 0.99059 0.88673 1.26247 0.91937 0.93431 1.02363 1.69654 1.31973 1.05813 1.34180 0.86297 0.78701 0.81255 0.79660 1.18769 1.21369 1.17276 1.22573 0.95666 0.96259 1.05330 1.67077 1.27776 0.99219 1.20937 1.20849 0.96033 0.94432 0.97237 0.92785 0.93099 0.92628 0.91048 0.92659 0.93096 0.92782 0.87155 0.87046 0.76271 0.78529 0.87660 0.87123 0.89913 0.84917 0.86634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.01 37.16 0.33 -1.14 16 2 C -0.05 -0.54 3.09 -91.77 -0.28 -0.83 16 3 C -0.14 -1.43 9.00 37.16 0.33 -1.09 16 4 C -0.14 -2.06 4.78 -104.65 -0.50 -2.56 16 5 C -0.08 -1.08 8.69 -39.52 -0.34 -1.42 16 6 C -0.21 -3.09 9.88 -39.43 -0.39 -3.48 16 7 C 0.23 4.07 6.74 -83.52 -0.56 3.51 16 8 N -0.87 -14.39 8.84 32.58 0.29 -14.10 16 9 C -0.07 -1.31 5.63 -104.70 -0.59 -1.90 16 10 C 0.01 0.26 5.82 -82.77 -0.48 -0.23 16 11 C -0.11 -2.23 9.37 -39.53 -0.37 -2.60 16 12 C -0.18 -4.03 9.87 -39.02 -0.39 -4.41 16 13 C 0.05 1.12 5.11 -106.63 -0.54 0.58 16 14 C -0.43 -10.92 9.59 -37.88 -0.36 -11.28 16 15 H 0.10 2.53 8.06 -52.48 -0.42 2.11 16 16 C 0.08 2.02 5.43 -17.33 -0.09 1.92 16 17 N -0.79 -19.98 13.93 55.55 0.77 -19.21 16 18 Si 0.91 19.86 24.52 -169.99 -4.17 15.69 16 19 H -0.26 -5.57 6.51 56.52 0.37 -5.20 16 20 H -0.29 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.25 -5.60 6.98 56.52 0.39 -5.20 16 22 C -0.03 -0.85 8.41 -16.77 -0.14 -0.99 16 23 N -0.44 -10.30 8.47 -9.12 -0.08 -10.38 16 24 C -0.07 -1.10 9.02 -39.20 -0.35 -1.46 16 25 H 0.05 0.53 7.38 -51.93 -0.38 0.15 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.82 7.86 -51.93 -0.41 0.42 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.52 7.36 -51.93 -0.38 0.14 16 32 H 0.11 1.27 7.07 -52.48 -0.37 0.90 16 33 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 34 H 0.41 7.63 6.56 -40.82 -0.27 7.36 16 35 H 0.39 5.13 8.84 -40.82 -0.36 4.77 16 36 H 0.11 1.92 7.96 -52.49 -0.42 1.51 16 37 H 0.11 2.29 8.06 -52.49 -0.42 1.86 16 38 H 0.29 6.58 8.30 -40.82 -0.34 6.24 16 39 H 0.13 3.19 4.58 -52.49 -0.24 2.95 16 40 H 0.12 1.85 7.84 -52.49 -0.41 1.44 16 LS Contribution 326.28 15.07 4.92 4.92 Total: -1.00 -26.80 326.28 -8.38 -35.18 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -5.38 Total: 15.28 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: -4.73 Total: -27.38 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.98 Total: -43.68 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.17 Total: 15.69 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -26.80 -8.38 -35.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244207023.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.528 kcal (2) G-P(sol) polarization free energy of solvation -26.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds