Wall clock time and date at job start Tue Mar 31 2020 05:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47194 * 2 1 4 4 C 1.50703 * 109.47041 * 119.99729 * 2 1 3 5 5 C 1.38599 * 119.83135 * 300.01821 * 4 2 1 6 6 C 1.38067 * 120.42006 * 179.97438 * 5 4 2 7 7 C 1.38831 * 120.06684 * 359.74569 * 6 5 4 8 8 N 1.39123 * 120.16882 * 180.27134 * 7 6 5 9 9 C 1.40419 * 119.66293 * 0.48928 * 7 6 5 10 10 C 1.47566 * 120.20769 * 179.78990 * 9 7 6 11 11 N 1.32682 * 120.00482 * 308.69559 * 10 9 7 12 12 C 1.31715 * 121.70795 * 180.28716 * 11 10 9 13 13 C 1.38890 * 121.51650 * 359.69776 * 12 11 10 14 14 C 1.36863 * 119.82538 * 0.02562 * 13 12 11 15 15 C 1.41117 * 118.40605 * 359.97438 * 14 13 12 16 16 C 1.40820 * 120.72632 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00423 * 154.41017 * 16 15 14 18 18 C 1.40045 * 120.00088 * 334.13341 * 16 15 14 19 19 N 1.30797 * 119.99946 * 343.73186 * 18 16 15 20 20 Si 1.86799 * 120.00317 * 163.73453 * 18 16 15 21 21 H 1.48502 * 109.47016 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47313 * 119.99812 * 20 18 16 23 23 H 1.48492 * 109.47348 * 240.00175 * 20 18 16 24 24 C 1.37797 * 119.82718 * 120.00141 * 4 2 1 25 25 H 1.09002 * 109.46883 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46853 * 300.00235 * 1 2 3 27 27 H 1.08994 * 109.47172 * 60.00107 * 1 2 3 28 28 H 1.08993 * 109.46884 * 239.99603 * 2 1 3 29 29 H 1.08999 * 109.47025 * 180.02562 * 3 2 1 30 30 H 1.09008 * 109.46785 * 299.99947 * 3 2 1 31 31 H 1.08995 * 109.47611 * 59.99463 * 3 2 1 32 32 H 1.07999 * 119.78607 * 0.02655 * 5 4 2 33 33 H 1.07997 * 119.97026 * 180.02562 * 6 5 4 34 34 H 0.97004 * 119.99882 * 173.38762 * 8 7 6 35 35 H 0.96995 * 119.99838 * 353.39258 * 8 7 6 36 36 H 1.07999 * 119.24115 * 179.67731 * 12 11 10 37 37 H 1.08007 * 120.08401 * 179.97438 * 13 12 11 38 38 H 1.08003 * 120.79801 * 179.97438 * 14 13 12 39 39 H 0.96999 * 120.00076 * 179.97438 * 19 18 16 40 40 H 1.07999 * 120.04365 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6951 -0.2340 2.4876 6 6 2.1481 -0.8756 3.6231 7 6 2.9426 -2.0087 3.5116 8 7 3.3956 -2.6601 4.6544 9 6 3.2903 -2.4911 2.2396 10 6 4.1380 -3.6918 2.1071 11 7 5.2863 -3.7694 2.7673 12 6 6.0713 -4.8225 2.6693 13 6 5.7326 -5.9090 1.8732 14 6 4.5592 -5.8973 1.1689 15 6 3.7221 -4.7664 1.2778 16 6 2.5034 -4.7030 0.5751 17 1 1.6983 -4.0853 0.9449 18 6 2.3374 -5.4362 -0.6064 19 7 3.3818 -5.9181 -1.2293 20 14 0.6246 -5.7261 -1.2931 21 1 -0.3789 -5.0813 -0.4085 22 1 0.5316 -5.1412 -2.6549 23 1 0.3593 -7.1855 -1.3620 24 6 2.8244 -1.8304 1.1000 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.0732 0.6442 2.5795 33 1 1.8805 -0.4984 4.5990 34 1 3.8687 -3.5034 4.5765 35 1 3.2383 -2.2712 5.5289 36 1 7.0000 -4.8413 3.2204 37 1 6.3940 -6.7605 1.8095 38 1 4.2804 -6.7335 0.5448 39 1 3.2668 -6.4263 -2.0474 40 1 3.0844 -2.1974 0.1181 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244208183.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:39 Heat of formation + Delta-G solvation = 27.908486 kcal Electronic energy + Delta-G solvation = -21930.803208 eV Core-core repulsion = 18901.655121 eV Total energy + Delta-G solvation = -3029.148087 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.26406 -37.91527 -35.59765 -34.16796 -32.57975 -31.51622 -30.56183 -28.75148 -27.20365 -26.81673 -25.59343 -22.88514 -21.93829 -21.43950 -20.82583 -18.85890 -17.38108 -16.42706 -16.21333 -15.70283 -15.19465 -14.61548 -14.35763 -14.01408 -13.69787 -13.14438 -13.11482 -12.95971 -12.56898 -12.38871 -12.13000 -12.04229 -11.90950 -11.69935 -11.54879 -11.34397 -11.09013 -10.88542 -10.77326 -10.59388 -10.28713 -10.12908 -9.72050 -9.59705 -9.43038 -8.48898 -8.04231 -7.98393 -7.51639 -6.94569 -6.52745 -4.49488 2.04144 2.40442 2.63736 2.96224 3.00257 3.06714 3.15368 3.81989 4.51061 4.64534 4.68827 5.21439 5.26796 5.54506 5.60462 5.62363 5.68307 5.87958 5.89805 6.00682 6.09959 6.14794 6.22080 6.27679 6.30280 6.41932 6.58125 6.59287 6.63596 6.74678 6.87323 6.87383 7.00620 7.06121 7.22844 7.31019 7.51079 7.66704 7.71371 7.90642 7.91572 8.28658 8.40971 8.52757 8.61791 8.70446 9.58067 9.98096 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.011715 B = 0.008311 C = 0.005545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.528764 B = 3368.411434 C = 5048.453337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.047 4.047 3 C -0.140 4.140 4 C -0.148 4.148 5 C -0.081 4.081 6 C -0.212 4.212 7 C 0.224 3.776 8 N -0.869 5.869 9 C -0.053 4.053 10 C 0.024 3.976 11 N -0.455 5.455 12 C -0.041 4.041 13 C -0.150 4.150 14 C -0.134 4.134 15 C 0.083 3.917 16 C -0.433 4.433 17 H 0.089 0.911 18 C 0.075 3.925 19 N -0.785 5.785 20 Si 0.906 3.094 21 H -0.256 1.256 22 H -0.271 1.271 23 H -0.271 1.271 24 C -0.041 4.041 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.402 0.598 35 H 0.385 0.615 36 H 0.118 0.882 37 H 0.096 0.904 38 H 0.124 0.876 39 H 0.284 0.716 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.261 6.344 2.507 8.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.065 4.065 3 C -0.197 4.197 4 C -0.150 4.150 5 C -0.099 4.099 6 C -0.235 4.235 7 C 0.118 3.882 8 N -0.407 5.407 9 C -0.058 4.058 10 C -0.115 4.115 11 N -0.163 5.163 12 C -0.201 4.201 13 C -0.171 4.171 14 C -0.160 4.160 15 C 0.079 3.921 16 C -0.462 4.462 17 H 0.107 0.893 18 C -0.144 4.144 19 N -0.409 5.409 20 Si 0.730 3.270 21 H -0.179 1.179 22 H -0.197 1.197 23 H -0.196 1.196 24 C -0.060 4.060 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.233 0.767 35 H 0.212 0.788 36 H 0.136 0.864 37 H 0.114 0.886 38 H 0.142 0.858 39 H 0.095 0.905 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.936 6.892 2.781 8.409 hybrid contribution -0.669 -1.271 -0.666 1.583 sum -4.605 5.621 2.115 7.568 Atomic orbital electron populations 1.21843 0.95354 1.01832 1.00810 1.19929 0.95112 0.95291 0.96209 1.21841 1.01149 0.95884 1.00859 1.19325 1.03476 0.98345 0.93826 1.20460 0.99157 0.98697 0.91629 1.20281 1.05934 0.99198 0.98116 1.17844 0.91879 0.91342 0.87158 1.42325 1.65917 1.27500 1.04992 1.17886 1.01037 0.96294 0.90631 1.19413 0.93495 0.93813 1.04732 1.67107 1.03823 1.25043 1.20361 1.21626 1.00343 0.92608 1.05506 1.21395 0.97942 0.98801 0.98939 1.21371 0.95185 0.98767 1.00677 1.18368 0.93053 0.90054 0.90653 1.19611 0.99158 1.22589 1.04889 0.89294 1.26010 0.98711 0.93203 0.96521 1.69790 1.31247 1.25476 1.14426 0.86265 0.82333 0.79095 0.79339 1.17914 1.19655 1.19623 1.20980 0.94462 0.92391 0.98212 0.92522 0.92939 0.93320 0.90918 0.92740 0.93323 0.92922 0.87524 0.87461 0.76696 0.78815 0.86433 0.88582 0.85812 0.90544 0.85826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.01 37.16 0.33 -1.56 16 2 C -0.05 -0.71 3.09 -91.77 -0.28 -0.99 16 3 C -0.14 -1.81 9.00 37.16 0.33 -1.48 16 4 C -0.15 -2.64 4.78 -104.65 -0.50 -3.14 16 5 C -0.08 -1.34 8.69 -39.51 -0.34 -1.68 16 6 C -0.21 -3.68 9.88 -39.42 -0.39 -4.07 16 7 C 0.22 4.44 6.75 -83.51 -0.56 3.88 16 8 N -0.87 -15.42 8.86 32.58 0.29 -15.14 16 9 C -0.05 -1.19 5.03 -104.72 -0.53 -1.72 16 10 C 0.02 0.60 5.68 -82.27 -0.47 0.13 16 11 N -0.46 -10.87 8.88 -9.20 -0.08 -10.95 16 12 C -0.04 -0.92 11.16 -17.36 -0.19 -1.11 16 13 C -0.15 -3.41 10.03 -39.84 -0.40 -3.81 16 14 C -0.13 -3.35 8.74 -38.99 -0.34 -3.69 16 15 C 0.08 2.14 5.57 -106.40 -0.59 1.54 16 16 C -0.43 -10.82 7.23 -37.93 -0.27 -11.09 16 17 H 0.09 2.22 6.66 -52.49 -0.35 1.87 16 18 C 0.07 1.77 5.18 -17.31 -0.09 1.68 16 19 N -0.79 -19.10 10.99 55.55 0.61 -18.49 16 20 Si 0.91 17.91 29.59 -169.99 -5.03 12.88 16 21 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16 22 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 23 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 24 C -0.04 -0.86 7.64 -39.19 -0.30 -1.16 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.65 7.37 -51.93 -0.38 0.27 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 1.14 7.86 -51.93 -0.41 0.73 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.55 8.14 -51.92 -0.42 0.12 16 31 H 0.05 0.64 7.37 -51.93 -0.38 0.26 16 32 H 0.11 1.50 7.07 -52.49 -0.37 1.13 16 33 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.40 7.77 6.81 -40.82 -0.28 7.50 16 35 H 0.39 5.48 8.84 -40.82 -0.36 5.12 16 36 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 37 H 0.10 1.90 8.06 -52.48 -0.42 1.48 16 38 H 0.12 3.14 6.31 -52.48 -0.33 2.80 16 39 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 40 H 0.12 2.77 7.29 -52.49 -0.38 2.39 16 LS Contribution 327.71 15.07 4.94 4.94 Total: -1.00 -26.75 327.71 -9.21 -35.96 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: -5.34 Total: 19.07 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: -4.59 Total: -28.27 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: 0.82 Total: -44.57 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -26.75 -9.21 -35.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244208183.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.865 kcal (2) G-P(sol) polarization free energy of solvation -26.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds