Wall clock time and date at job start Tue Mar 31 2020 05:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47010 * 2 1 4 4 C 1.50705 * 109.47379 * 240.00036 * 2 1 3 5 5 C 1.38475 * 119.84729 * 59.72538 * 4 2 1 6 6 C 1.38083 * 120.34586 * 179.72511 * 5 4 2 7 7 C 1.38836 * 120.04700 * 0.54513 * 6 5 4 8 8 N 1.39295 * 120.14876 * 179.70030 * 7 6 5 9 9 C 1.40073 * 119.70240 * 359.73336 * 7 6 5 10 10 C 1.48130 * 120.17427 * 180.02562 * 9 7 6 11 11 C 1.40004 * 119.62047 * 131.91401 * 10 9 7 12 12 C 1.38643 * 119.46070 * 180.02562 * 11 10 9 13 13 C 1.38333 * 118.70078 * 359.97438 * 12 11 10 14 14 C 1.40670 * 119.20306 * 0.02562 * 13 12 11 15 15 C 1.41357 * 119.76570 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99700 * 0.02562 * 15 14 13 17 17 C 1.40006 * 120.00249 * 179.97438 * 15 14 13 18 18 N 1.30750 * 119.99928 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00051 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.46921 * 90.00745 * 19 17 15 21 21 H 1.48504 * 109.47258 * 210.00509 * 19 17 15 22 22 H 1.48495 * 109.47314 * 330.00421 * 19 17 15 23 23 N 1.32279 * 119.61152 * 311.64173 * 10 9 7 24 24 C 1.37931 * 119.85084 * 239.99725 * 4 2 1 25 25 H 1.08994 * 109.47516 * 299.99857 * 1 2 3 26 26 H 1.09003 * 109.46932 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47115 * 60.00357 * 1 2 3 28 28 H 1.09001 * 109.47736 * 120.00033 * 2 1 3 29 29 H 1.08994 * 109.47379 * 59.99634 * 3 2 1 30 30 H 1.09002 * 109.47234 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47296 * 299.99691 * 3 2 1 32 32 H 1.08000 * 119.82902 * 359.97438 * 5 4 2 33 33 H 1.08003 * 119.97785 * 180.25251 * 6 5 4 34 34 H 0.97003 * 120.00168 * 173.37252 * 8 7 6 35 35 H 0.97003 * 120.00420 * 353.37916 * 8 7 6 36 36 H 1.07998 * 120.26909 * 0.02562 * 11 10 9 37 37 H 1.07994 * 120.65168 * 180.02562 * 12 11 10 38 38 H 1.07996 * 120.39509 * 180.02562 * 13 12 11 39 39 H 0.97006 * 120.00129 * 179.97438 * 18 17 15 40 40 H 1.08003 * 120.03031 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 1.6912 -0.2379 -2.4866 6 6 2.1505 -0.8775 -3.6210 7 6 2.9494 -2.0072 -3.5068 8 7 3.4088 -2.6577 -4.6497 9 6 3.2910 -2.4903 -2.2371 10 6 4.1433 -3.6944 -2.1031 11 6 5.2380 -3.6737 -1.2306 12 6 6.0338 -4.8024 -1.1082 13 6 5.7186 -5.9219 -1.8570 14 6 4.6057 -5.8816 -2.7166 15 6 4.2731 -7.0187 -3.4878 16 1 4.8724 -7.9143 -3.4154 17 6 3.1663 -6.9843 -4.3445 18 7 2.4406 -5.9002 -4.4316 19 14 2.7264 -8.4871 -5.3630 20 1 1.7921 -9.3492 -4.5952 21 1 2.0768 -8.0558 -6.6268 22 1 3.9605 -9.2511 -5.6765 23 7 3.8580 -4.7785 -2.8052 24 6 2.8252 -1.8315 -1.1003 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6766 1.9564 0.8899 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.0660 0.6378 -2.5797 33 1 1.8841 -0.5015 -4.5978 34 1 4.0434 -3.3871 -4.5706 35 1 3.0941 -2.3813 -5.5246 36 1 5.4607 -2.7858 -0.6576 37 1 6.8827 -4.8077 -0.4406 38 1 6.3196 -6.8161 -1.7827 39 1 1.6739 -5.8761 -5.0255 40 1 3.0853 -2.1986 -0.1185 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244209817.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:44 Heat of formation + Delta-G solvation = 37.800647 kcal Electronic energy + Delta-G solvation = -21561.191953 eV Core-core repulsion = 18532.472822 eV Total energy + Delta-G solvation = -3028.719131 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.28786 -37.85536 -35.67019 -33.68967 -32.58835 -31.47621 -30.39618 -28.95026 -27.25036 -26.95177 -25.51953 -23.04744 -22.06759 -21.39127 -20.75276 -18.95711 -17.37861 -16.48993 -16.18914 -15.40887 -14.91241 -14.57129 -14.27491 -14.14377 -13.78601 -13.26760 -13.15996 -13.02971 -12.60440 -12.44079 -12.24128 -12.08041 -11.97806 -11.83401 -11.23007 -11.09411 -11.00835 -10.87718 -10.76847 -10.63184 -10.33881 -10.24667 -9.87002 -9.63066 -9.41393 -8.51778 -8.07464 -7.61136 -7.51638 -6.54109 -6.39702 -4.54852 1.90177 2.29445 2.77120 3.01486 3.06449 3.08806 3.18599 3.91871 4.46091 4.72598 4.81265 5.06910 5.12451 5.45441 5.49998 5.54931 5.69920 5.76114 5.83651 5.89597 5.97809 5.99447 6.11188 6.14778 6.23312 6.36686 6.44570 6.49727 6.53997 6.64289 6.74006 6.84552 6.91663 7.06821 7.17942 7.23640 7.38425 7.53300 7.61257 7.73704 8.00713 8.19677 8.36385 8.61282 8.72019 8.89809 10.03550 10.27388 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.019921 B = 0.005018 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.237372 B = 5578.912529 C = 6268.508221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.044 4.044 3 C -0.141 4.141 4 C -0.156 4.156 5 C -0.068 4.068 6 C -0.217 4.217 7 C 0.257 3.743 8 N -0.849 5.849 9 C -0.093 4.093 10 C 0.187 3.813 11 C -0.301 4.301 12 C -0.059 4.059 13 C -0.277 4.277 14 C 0.254 3.746 15 C -0.433 4.433 16 H 0.082 0.918 17 C 0.070 3.930 18 N -0.708 5.708 19 Si 0.904 3.096 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.263 1.263 23 N -0.471 5.471 24 C -0.053 4.053 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.412 0.588 35 H 0.385 0.615 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.271 0.729 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.406 9.477 2.098 10.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.063 4.063 3 C -0.198 4.198 4 C -0.158 4.158 5 C -0.087 4.087 6 C -0.240 4.240 7 C 0.148 3.852 8 N -0.385 5.385 9 C -0.099 4.099 10 C 0.042 3.958 11 C -0.324 4.324 12 C -0.083 4.083 13 C -0.300 4.300 14 C 0.129 3.871 15 C -0.464 4.464 16 H 0.100 0.900 17 C -0.156 4.156 18 N -0.329 5.329 19 Si 0.728 3.272 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.187 1.187 23 N -0.184 5.184 24 C -0.073 4.073 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.245 0.755 35 H 0.211 0.789 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.082 0.918 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.285 9.488 1.410 10.139 hybrid contribution 0.613 -0.993 -0.166 1.179 sum -2.672 8.495 1.244 8.992 Atomic orbital electron populations 1.21852 0.95287 1.01798 1.00989 1.19900 0.95151 0.95355 0.95870 1.21848 1.01140 0.95817 1.01019 1.19233 1.03966 0.98632 0.93979 1.20485 0.98257 0.98401 0.91592 1.20372 1.06624 0.98707 0.98331 1.17705 0.90555 0.89761 0.87216 1.42535 1.51238 1.40136 1.04629 1.18182 1.03743 0.96621 0.91353 1.19737 0.91266 0.92085 0.92698 1.21227 1.02541 0.99343 1.09310 1.20791 0.97105 0.93442 0.96949 1.21768 1.03666 0.98642 1.05956 1.18562 0.87381 0.91410 0.89733 1.19566 1.09658 0.98120 1.19046 0.89981 1.26032 0.95796 0.96891 0.96861 1.70142 1.10682 1.25668 1.26373 0.86388 0.79518 0.81981 0.79291 1.19526 1.20250 1.18691 1.68922 1.28299 0.97952 1.23241 1.20763 0.95582 0.93768 0.97162 0.93257 0.92617 0.92800 0.91211 0.93256 0.92712 0.92811 0.87339 0.87137 0.75524 0.78883 0.88722 0.88647 0.88465 0.91765 0.86810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.00 37.16 0.33 -1.34 16 2 C -0.04 -0.58 3.09 -91.77 -0.28 -0.86 16 3 C -0.14 -1.59 9.01 37.16 0.33 -1.25 16 4 C -0.16 -2.52 4.78 -104.64 -0.50 -3.02 16 5 C -0.07 -1.07 8.69 -39.55 -0.34 -1.42 16 6 C -0.22 -3.70 9.89 -39.42 -0.39 -4.09 16 7 C 0.26 5.13 6.74 -83.56 -0.56 4.56 16 8 N -0.85 -16.49 8.84 32.55 0.29 -16.20 16 9 C -0.09 -2.01 5.62 -104.72 -0.59 -2.60 16 10 C 0.19 4.50 5.75 -82.95 -0.48 4.02 16 11 C -0.30 -6.86 9.50 -38.77 -0.37 -7.23 16 12 C -0.06 -1.32 10.15 -39.40 -0.40 -1.72 16 13 C -0.28 -6.75 9.83 -38.63 -0.38 -7.13 16 14 C 0.25 6.77 6.55 -85.01 -0.56 6.21 16 15 C -0.43 -11.24 9.14 -37.73 -0.34 -11.58 16 16 H 0.08 2.02 7.85 -52.49 -0.41 1.61 16 17 C 0.07 1.71 5.50 -17.35 -0.10 1.61 16 18 N -0.71 -17.85 11.46 55.55 0.64 -17.21 16 19 Si 0.90 18.22 29.56 -169.99 -5.02 13.20 16 20 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 21 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 22 H -0.26 -5.24 7.11 56.52 0.40 -4.83 16 23 N -0.47 -12.33 6.13 -7.70 -0.05 -12.38 16 24 C -0.05 -1.00 9.06 -39.26 -0.36 -1.36 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.61 7.36 -51.93 -0.38 0.23 16 28 H 0.07 0.91 7.86 -51.93 -0.41 0.50 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.58 7.39 -51.93 -0.38 0.20 16 32 H 0.11 1.43 7.07 -52.49 -0.37 1.05 16 33 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 34 H 0.41 9.10 6.66 -40.82 -0.27 8.83 16 35 H 0.38 6.29 8.85 -40.82 -0.36 5.93 16 36 H 0.09 1.96 7.99 -52.49 -0.42 1.54 16 37 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 38 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 39 H 0.27 6.35 8.29 -40.82 -0.34 6.01 16 40 H 0.11 2.07 7.87 -52.48 -0.41 1.66 16 LS Contribution 333.52 15.07 5.03 5.03 Total: -1.00 -27.55 333.52 -9.61 -37.16 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: -5.52 Total: 17.58 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: -4.98 Total: -27.18 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: 0.88 Total: -45.78 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.02 Total: 13.20 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.55 -9.61 -37.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244209817.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.962 kcal (2) G-P(sol) polarization free energy of solvation -27.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds