Wall clock time and date at job start Tue Mar 31 2020 05:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46746 * 2 1 4 4 C 1.50693 * 109.47075 * 120.00035 * 2 1 3 5 5 C 1.38419 * 119.86346 * 300.00530 * 4 2 1 6 6 C 1.38125 * 120.32486 * 179.97438 * 5 4 2 7 7 C 1.38786 * 120.04162 * 0.02562 * 6 5 4 8 8 N 1.39473 * 120.13651 * 179.97438 * 7 6 5 9 9 C 1.39962 * 119.72278 * 359.96845 * 7 6 5 10 10 C 1.48321 * 120.15834 * 180.02562 * 9 7 6 11 11 C 1.39754 * 120.41714 * 130.00505 * 10 9 7 12 12 N 1.31906 * 121.15019 * 180.30049 * 11 10 9 13 13 C 1.31529 * 122.12047 * 359.42361 * 12 11 10 14 14 C 1.40784 * 120.67101 * 0.57436 * 13 12 11 15 15 C 1.41438 * 120.59680 * 179.70076 * 14 13 12 16 16 H 1.08007 * 119.99583 * 155.57419 * 15 14 13 17 17 C 1.39933 * 120.00498 * 335.56913 * 15 14 13 18 18 N 1.30830 * 119.99823 * 342.35782 * 17 15 14 19 19 Si 1.86799 * 120.00155 * 162.34958 * 17 15 14 20 20 H 1.48498 * 109.46994 * 94.67735 * 19 17 15 21 21 H 1.48496 * 109.47296 * 214.67893 * 19 17 15 22 22 H 1.48502 * 109.47062 * 334.67699 * 19 17 15 23 23 C 1.39181 * 120.41731 * 310.02639 * 10 9 7 24 24 C 1.38016 * 119.86292 * 120.27903 * 4 2 1 25 25 H 1.08991 * 109.47222 * 299.99908 * 1 2 3 26 26 H 1.09002 * 109.47247 * 59.99938 * 1 2 3 27 27 H 1.09002 * 109.46597 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47410 * 240.00380 * 2 1 3 29 29 H 1.08999 * 109.46856 * 60.00040 * 3 2 1 30 30 H 1.09000 * 109.46823 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47564 * 299.99823 * 3 2 1 32 32 H 1.08000 * 119.83629 * 0.02562 * 5 4 2 33 33 H 1.07998 * 119.97765 * 179.97438 * 6 5 4 34 34 H 0.96999 * 119.99741 * 180.02562 * 8 7 6 35 35 H 0.96999 * 120.00077 * 0.02562 * 8 7 6 36 36 H 1.08008 * 119.42510 * 0.02562 * 11 10 9 37 37 H 1.07994 * 119.66371 * 180.27302 * 13 12 11 38 38 H 0.96998 * 119.99785 * 179.97438 * 18 17 15 39 39 H 1.08003 * 120.95060 * 359.97438 * 23 10 9 40 40 H 1.08003 * 120.02380 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6961 -0.2351 2.4862 6 6 2.1509 -0.8791 3.6204 7 6 2.9494 -2.0083 3.5052 8 7 3.4101 -2.6598 4.6491 9 6 3.2905 -2.4906 2.2363 10 6 4.1429 -3.6969 2.1019 11 6 3.7552 -4.7477 1.2661 12 7 4.4992 -5.8297 1.1404 13 6 5.6400 -5.9721 1.7794 14 6 6.1099 -4.9646 2.6432 15 6 7.3338 -5.1221 3.3344 16 1 7.8833 -4.2528 3.6643 17 6 7.8326 -6.4041 3.5910 18 7 7.0397 -7.4419 3.5145 19 14 9.6306 -6.6337 4.0424 20 1 9.7701 -6.6616 5.5206 21 1 10.1241 -7.9138 3.4743 22 1 10.4270 -5.5079 3.4913 23 6 5.3387 -3.7968 2.8070 24 6 2.8304 -1.8289 1.1005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.0745 0.6431 2.5797 33 1 1.8854 -0.5032 4.5974 34 1 3.9685 -3.4487 4.5662 35 1 3.1722 -2.3241 5.5275 36 1 2.8280 -4.6746 0.7170 37 1 6.2197 -6.8731 1.6438 38 1 7.3856 -8.3306 3.6919 39 1 5.6661 -3.0020 3.4608 40 1 3.0936 -2.1939 0.1187 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244222464.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:07 Heat of formation + Delta-G solvation = 23.594025 kcal Electronic energy + Delta-G solvation = -21122.243888 eV Core-core repulsion = 18092.908711 eV Total energy + Delta-G solvation = -3029.335176 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.57084 -38.05119 -35.97372 -34.07401 -32.90223 -31.98315 -30.60222 -28.73012 -27.25067 -27.07078 -25.63613 -23.08256 -22.30090 -21.58489 -20.94453 -19.26007 -17.34002 -16.62173 -16.47635 -15.63211 -15.21658 -15.10766 -14.49250 -14.30050 -13.86448 -13.45148 -13.30089 -13.23461 -12.75635 -12.58257 -12.43900 -12.22091 -12.09372 -11.59713 -11.53045 -11.29412 -11.16884 -11.14686 -10.88827 -10.80182 -10.61417 -10.44158 -10.02352 -9.95916 -9.43945 -8.79673 -8.23731 -7.85080 -7.54201 -6.96458 -6.80584 -4.55494 1.69127 2.00745 2.64001 2.83344 2.99570 3.03557 3.12889 3.81057 4.26377 4.38181 4.54996 4.92674 4.97595 5.32017 5.32377 5.35264 5.58449 5.63197 5.65219 5.74271 5.81351 5.86516 6.00601 6.05989 6.09318 6.22276 6.29488 6.31851 6.38735 6.47702 6.66287 6.70572 6.76473 7.00222 7.03040 7.08969 7.22847 7.35236 7.58215 7.70003 7.94274 8.02389 8.23519 8.27437 8.63423 8.65992 9.68461 10.00555 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.027912 B = 0.003875 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.916772 B = 7224.165205 C = 7524.563601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.047 4.047 3 C -0.142 4.142 4 C -0.143 4.143 5 C -0.075 4.075 6 C -0.205 4.205 7 C 0.226 3.774 8 N -0.874 5.874 9 C -0.094 4.094 10 C -0.066 4.066 11 C -0.028 4.028 12 N -0.476 5.476 13 C 0.045 3.955 14 C 0.066 3.934 15 C -0.453 4.453 16 H 0.081 0.919 17 C 0.076 3.924 18 N -0.788 5.788 19 Si 0.912 3.088 20 H -0.270 1.270 21 H -0.273 1.273 22 H -0.259 1.259 23 C -0.197 4.197 24 C -0.060 4.060 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.409 0.591 35 H 0.390 0.610 36 H 0.119 0.881 37 H 0.150 0.850 38 H 0.285 0.715 39 H 0.104 0.896 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.043 11.168 -0.720 13.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.066 4.066 3 C -0.199 4.199 4 C -0.145 4.145 5 C -0.094 4.094 6 C -0.228 4.228 7 C 0.120 3.880 8 N -0.414 5.414 9 C -0.100 4.100 10 C -0.068 4.068 11 C -0.182 4.182 12 N -0.183 5.183 13 C -0.119 4.119 14 C 0.062 3.938 15 C -0.483 4.483 16 H 0.099 0.901 17 C -0.143 4.143 18 N -0.413 5.413 19 Si 0.736 3.264 20 H -0.195 1.195 21 H -0.198 1.198 22 H -0.183 1.183 23 C -0.223 4.223 24 C -0.079 4.079 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.242 0.758 35 H 0.217 0.783 36 H 0.136 0.864 37 H 0.167 0.833 38 H 0.096 0.904 39 H 0.122 0.878 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.376 10.256 -1.258 12.695 hybrid contribution 1.204 0.304 1.297 1.796 sum -6.171 10.560 0.039 12.231 Atomic orbital electron populations 1.21850 0.95086 1.01803 1.01169 1.19949 0.95286 0.95534 0.95811 1.21852 1.01260 0.95652 1.01172 1.19385 1.02791 0.98197 0.94140 1.20532 0.98704 0.98612 0.91530 1.20386 1.05481 0.98423 0.98534 1.17786 0.92155 0.90992 0.87083 1.42825 1.59296 1.34357 1.04963 1.18436 1.02666 0.97693 0.91165 1.19210 0.94866 0.93509 0.99259 1.21854 1.01024 0.91311 1.03976 1.67135 1.06151 1.22827 1.22200 1.23067 0.93070 1.00609 0.95194 1.18465 0.92845 0.91580 0.90957 1.19526 1.04135 0.92945 1.31659 0.90105 1.25967 0.99909 0.95474 0.92982 1.69770 1.36431 1.00471 1.34610 0.86234 0.81890 0.79032 0.79285 1.19471 1.19793 1.18295 1.21370 0.95354 1.00556 1.05018 1.20874 0.95606 0.93926 0.97485 0.92787 0.93052 0.92602 0.90952 0.92786 0.92625 0.93043 0.87023 0.86884 0.75827 0.78342 0.86373 0.83315 0.90353 0.87806 0.86391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.01 37.16 0.33 -1.12 16 2 C -0.05 -0.56 3.09 -91.77 -0.28 -0.84 16 3 C -0.14 -1.47 9.01 37.16 0.33 -1.14 16 4 C -0.14 -2.07 4.78 -104.64 -0.50 -2.57 16 5 C -0.08 -1.04 8.69 -39.56 -0.34 -1.38 16 6 C -0.21 -3.03 9.88 -39.42 -0.39 -3.42 16 7 C 0.23 3.90 6.69 -83.53 -0.56 3.34 16 8 N -0.87 -14.09 8.66 32.55 0.28 -13.81 16 9 C -0.09 -1.80 5.50 -104.72 -0.58 -2.38 16 10 C -0.07 -1.47 5.08 -104.83 -0.53 -2.00 16 11 C -0.03 -0.65 10.69 -16.95 -0.18 -0.83 16 12 N -0.48 -12.22 10.32 -12.27 -0.13 -12.35 16 13 C 0.04 1.18 9.89 -16.72 -0.17 1.02 16 14 C 0.07 1.70 5.58 -106.71 -0.60 1.10 16 15 C -0.45 -11.39 9.08 -37.73 -0.34 -11.74 16 16 H 0.08 1.95 7.91 -52.48 -0.41 1.54 16 17 C 0.08 1.80 5.15 -17.34 -0.09 1.71 16 18 N -0.79 -19.47 10.96 55.55 0.61 -18.86 16 19 Si 0.91 17.75 29.59 -169.99 -5.03 12.72 16 20 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 21 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 22 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 23 C -0.20 -4.63 7.61 -38.23 -0.29 -4.92 16 24 C -0.06 -1.02 9.14 -39.28 -0.36 -1.38 16 25 H 0.05 0.53 7.37 -51.93 -0.38 0.14 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.85 7.86 -51.93 -0.41 0.44 16 29 H 0.05 0.53 7.37 -51.93 -0.38 0.15 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.11 1.28 7.07 -52.49 -0.37 0.91 16 33 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 34 H 0.41 7.48 5.98 -40.82 -0.24 7.24 16 35 H 0.39 5.01 8.84 -40.82 -0.36 4.65 16 36 H 0.12 2.53 8.04 -52.48 -0.42 2.11 16 37 H 0.15 4.02 6.15 -52.49 -0.32 3.69 16 38 H 0.29 6.39 8.30 -40.82 -0.34 6.06 16 39 H 0.10 2.33 7.54 -52.48 -0.40 1.93 16 40 H 0.12 1.96 7.93 -52.48 -0.42 1.54 16 LS Contribution 330.72 15.07 4.98 4.98 Total: -1.00 -27.08 330.72 -9.19 -36.27 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: -5.37 Total: 17.59 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: -4.54 Total: -26.55 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 0.76 Total: -45.02 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.72 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.08 -9.19 -36.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244222464.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.864 kcal (2) G-P(sol) polarization free energy of solvation -27.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds