Wall clock time and date at job start Tue Mar 31 2020 05:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47312 * 2 1 4 4 C 1.50700 * 109.47275 * 119.99612 * 2 1 3 5 5 C 1.38584 * 119.83452 * 300.00318 * 4 2 1 6 6 C 1.38102 * 120.39918 * 179.97438 * 5 4 2 7 7 C 1.38798 * 120.06656 * 0.27867 * 6 5 4 8 8 N 1.39199 * 120.16648 * 179.72045 * 7 6 5 9 9 C 1.40381 * 119.66887 * 359.47069 * 7 6 5 10 10 C 1.47758 * 120.19677 * 180.24682 * 9 7 6 11 11 C 1.40377 * 120.35421 * 310.00366 * 10 9 7 12 12 C 1.36607 * 118.59781 * 179.72384 * 11 10 9 13 13 C 1.40924 * 119.26860 * 0.54986 * 12 11 10 14 14 C 1.40906 * 119.67309 * 179.69640 * 13 12 11 15 15 H 1.08001 * 120.00054 * 0.02562 * 14 13 12 16 16 C 1.40064 * 120.00199 * 180.02562 * 14 13 12 17 17 N 1.30737 * 119.99923 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00206 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47100 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47166 * 120.00485 * 18 16 14 21 21 H 1.48505 * 109.46885 * 239.99871 * 18 16 14 22 22 N 1.33809 * 120.65619 * 359.70821 * 13 12 11 23 23 C 1.31166 * 121.50526 * 0.02562 * 22 13 12 24 24 C 1.37839 * 119.83315 * 120.01820 * 4 2 1 25 25 H 1.09000 * 109.47137 * 300.00360 * 1 2 3 26 26 H 1.08999 * 109.46715 * 60.00333 * 1 2 3 27 27 H 1.09004 * 109.46893 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47137 * 239.99640 * 2 1 3 29 29 H 1.09000 * 109.47627 * 180.02562 * 3 2 1 30 30 H 1.09008 * 109.47086 * 299.99763 * 3 2 1 31 31 H 1.09000 * 109.47313 * 59.99748 * 3 2 1 32 32 H 1.07994 * 119.79862 * 359.97329 * 5 4 2 33 33 H 1.08002 * 119.96240 * 179.97438 * 6 5 4 34 34 H 0.96998 * 119.99320 * 0.02562 * 8 7 6 35 35 H 0.96997 * 119.99999 * 179.97438 * 8 7 6 36 36 H 1.07991 * 120.70041 * 359.97396 * 11 10 9 37 37 H 1.08001 * 120.36689 * 180.26121 * 12 11 10 38 38 H 0.97004 * 120.00156 * 180.02562 * 17 16 14 39 39 H 1.08010 * 119.66012 * 179.97438 * 23 22 13 40 40 H 1.08002 * 120.03691 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.6954 -0.2338 2.4875 6 6 2.1489 -0.8760 3.6229 7 6 2.9520 -2.0024 3.5109 8 7 3.4151 -2.6479 4.6539 9 6 3.2907 -2.4907 2.2390 10 6 4.1404 -3.6922 2.1062 11 6 5.3490 -3.7880 2.8138 12 6 6.1038 -4.9174 2.6689 13 6 5.6550 -5.9404 1.8098 14 6 6.4300 -7.1062 1.6490 15 1 7.3627 -7.2126 2.1830 16 6 5.9908 -8.1271 0.7965 17 7 4.8621 -7.9981 0.1496 18 14 7.0185 -9.6722 0.5827 19 1 8.2429 -9.5717 1.4171 20 1 6.2269 -10.8556 1.0048 21 1 7.4031 -9.8174 -0.8443 22 7 4.5004 -5.8157 1.1451 23 6 3.7512 -4.7460 1.2675 24 6 2.8249 -1.8305 1.1001 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9563 0.8900 32 1 1.0745 0.6449 2.5796 33 1 1.8824 -0.4983 4.5990 34 1 3.1763 -2.3108 5.5315 35 1 3.9759 -3.4352 4.5728 36 1 5.6732 -2.9877 3.4623 37 1 7.0364 -5.0231 3.2031 38 1 4.5577 -8.7053 -0.4405 39 1 2.8248 -4.6764 0.7165 40 1 3.0844 -2.1978 0.1182 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244223107.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:11 Heat of formation + Delta-G solvation = 34.520693 kcal Electronic energy + Delta-G solvation = -21055.692442 eV Core-core repulsion = 18026.831082 eV Total energy + Delta-G solvation = -3028.861360 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.40588 -37.94294 -35.90780 -33.76167 -32.85029 -31.54554 -30.55333 -29.01660 -27.54576 -27.01241 -25.42454 -22.70561 -22.33988 -21.52992 -20.89252 -19.03588 -17.63512 -16.63020 -16.37330 -15.61281 -15.30311 -14.52711 -14.36004 -14.09310 -13.86955 -13.36562 -13.20420 -13.08523 -12.64281 -12.48153 -12.36367 -12.14457 -12.06618 -12.01004 -11.27920 -11.21775 -11.10921 -11.05436 -10.86846 -10.65415 -10.38250 -10.24382 -9.93095 -9.88353 -9.48390 -8.56207 -8.24533 -7.62402 -7.56501 -6.75892 -6.48344 -4.58014 1.84559 2.12058 2.71396 3.00454 3.03260 3.07395 3.13116 3.86064 4.37311 4.43754 4.67694 5.01617 5.05327 5.39135 5.42570 5.50747 5.70348 5.70790 5.84070 5.87697 5.91044 5.91965 6.04601 6.07090 6.10879 6.16595 6.37596 6.37976 6.41894 6.58095 6.66759 6.78801 6.85684 7.00187 7.01436 7.23712 7.32864 7.40256 7.57894 7.69437 7.95313 8.05050 8.14020 8.28308 8.54788 8.83303 10.03395 10.20218 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.025368 B = 0.003883 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.489117 B = 7208.606214 C = 7909.663553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.048 4.048 3 C -0.141 4.141 4 C -0.136 4.136 5 C -0.089 4.089 6 C -0.202 4.202 7 C 0.208 3.792 8 N -0.877 5.877 9 C -0.055 4.055 10 C -0.261 4.261 11 C -0.049 4.049 12 C -0.272 4.272 13 C 0.252 3.748 14 C -0.420 4.420 15 H 0.085 0.915 16 C 0.066 3.934 17 N -0.706 5.706 18 Si 0.909 3.091 19 H -0.260 1.260 20 H -0.272 1.272 21 H -0.272 1.272 22 N -0.486 5.486 23 C 0.150 3.850 24 C -0.077 4.077 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.387 0.613 35 H 0.403 0.597 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.274 0.726 39 H 0.119 0.881 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.158 10.821 2.383 12.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.067 4.067 3 C -0.198 4.198 4 C -0.138 4.138 5 C -0.108 4.108 6 C -0.225 4.225 7 C 0.103 3.897 8 N -0.417 5.417 9 C -0.060 4.060 10 C -0.266 4.266 11 C -0.073 4.073 12 C -0.294 4.294 13 C 0.128 3.872 14 C -0.450 4.450 15 H 0.103 0.897 16 C -0.161 4.161 17 N -0.326 5.326 18 Si 0.732 3.268 19 H -0.183 1.183 20 H -0.197 1.197 21 H -0.197 1.197 22 N -0.197 5.197 23 C -0.017 4.017 24 C -0.096 4.096 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.214 0.786 35 H 0.235 0.765 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.086 0.914 39 H 0.136 0.864 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.508 9.977 1.652 11.516 hybrid contribution 0.809 -0.111 0.851 1.179 sum -4.699 9.866 2.502 11.210 Atomic orbital electron populations 1.21845 0.95163 1.01790 1.01062 1.19958 0.95242 0.95490 0.95988 1.21844 1.01189 0.95740 1.01071 1.19377 1.02483 0.98002 0.93941 1.20465 0.99754 0.99038 0.91561 1.20338 1.05361 0.98562 0.98252 1.17881 0.93008 0.91593 0.87257 1.42583 1.59605 1.34552 1.04964 1.18360 1.00714 0.96541 0.90430 1.18920 0.99102 0.97453 1.11171 1.20598 0.93640 0.96042 0.96994 1.21406 1.02417 0.97440 1.08176 1.18634 0.89212 0.91735 0.87573 1.19698 1.05290 0.99030 1.21008 0.89660 1.26141 0.95100 1.00090 0.94728 1.70146 1.16244 1.30538 1.15677 0.86251 0.80640 0.80767 0.79104 1.18314 1.19702 1.19685 1.68800 1.05684 1.21467 1.23776 1.22750 0.97118 0.89032 0.92849 1.20956 0.96932 0.94120 0.97624 0.92835 0.93144 0.92599 0.91005 0.92694 0.93142 0.92831 0.87375 0.87322 0.78579 0.76501 0.88667 0.88368 0.91429 0.86386 0.86683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.01 37.16 0.33 -1.23 16 2 C -0.05 -0.60 3.09 -91.78 -0.28 -0.89 16 3 C -0.14 -1.55 9.00 37.16 0.33 -1.22 16 4 C -0.14 -2.06 4.78 -104.64 -0.50 -2.56 16 5 C -0.09 -1.29 8.69 -39.50 -0.34 -1.64 16 6 C -0.20 -3.06 9.88 -39.42 -0.39 -3.45 16 7 C 0.21 3.57 6.70 -83.50 -0.56 3.01 16 8 N -0.88 -13.42 8.65 32.59 0.28 -13.14 16 9 C -0.06 -1.06 5.51 -104.68 -0.58 -1.64 16 10 C -0.26 -5.71 5.11 -104.46 -0.53 -6.25 16 11 C -0.05 -1.06 7.78 -39.37 -0.31 -1.37 16 12 C -0.27 -6.45 9.76 -39.15 -0.38 -6.83 16 13 C 0.25 6.73 6.55 -84.98 -0.56 6.17 16 14 C -0.42 -10.94 9.11 -37.89 -0.35 -11.29 16 15 H 0.09 2.07 7.85 -52.49 -0.41 1.66 16 16 C 0.07 1.63 5.50 -17.33 -0.10 1.54 16 17 N -0.71 -18.41 11.44 55.55 0.64 -17.77 16 18 Si 0.91 18.06 29.56 -169.99 -5.02 13.04 16 19 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 20 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 21 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 22 N -0.49 -13.15 7.83 -10.82 -0.08 -13.24 16 23 C 0.15 3.63 10.70 -17.10 -0.18 3.44 16 24 C -0.08 -1.37 9.14 -39.20 -0.36 -1.73 16 25 H 0.05 0.56 7.37 -51.93 -0.38 0.18 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.91 7.86 -51.93 -0.41 0.50 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.48 8.14 -51.92 -0.42 0.05 16 31 H 0.05 0.56 7.37 -51.93 -0.38 0.17 16 32 H 0.11 1.32 7.07 -52.49 -0.37 0.95 16 33 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.39 4.70 8.84 -40.82 -0.36 4.34 16 35 H 0.40 6.74 5.98 -40.82 -0.24 6.49 16 36 H 0.10 1.87 7.55 -52.49 -0.40 1.47 16 37 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 38 H 0.27 6.45 8.29 -40.82 -0.34 6.11 16 39 H 0.12 2.66 8.05 -52.48 -0.42 2.24 16 40 H 0.12 2.03 7.92 -52.49 -0.42 1.61 16 LS Contribution 331.93 15.07 5.00 5.00 Total: -1.00 -28.16 331.93 -9.40 -37.56 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -5.47 Total: 14.47 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: -4.74 Total: -25.92 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.83 Total: -44.15 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.02 Total: 13.04 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.16 -9.40 -37.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244223107.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.081 kcal (2) G-P(sol) polarization free energy of solvation -28.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds