Wall clock time and date at job start Tue Mar 31 2020 05:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47146 * 2 1 4 4 C 1.50699 * 109.47572 * 120.00024 * 2 1 3 5 5 C 1.38588 * 119.82905 * 300.02399 * 4 2 1 6 6 C 1.38100 * 120.40969 * 179.97438 * 5 4 2 7 7 C 1.38802 * 120.07310 * 359.97438 * 6 5 4 8 8 N 1.39179 * 120.16961 * 179.97438 * 7 6 5 9 9 C 1.40431 * 119.66130 * 0.02562 * 7 6 5 10 10 C 1.47629 * 120.19975 * 180.02562 * 9 7 6 11 11 C 1.39446 * 120.79606 * 244.66824 * 10 9 7 12 12 N 1.31619 * 120.64422 * 179.73012 * 11 10 9 13 13 C 1.32258 * 122.51861 * 0.59698 * 12 11 10 14 14 C 1.36426 * 121.53702 * 359.66779 * 13 12 11 15 15 C 1.41146 * 119.11962 * 0.03324 * 14 13 12 16 16 C 1.40840 * 121.11415 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00031 * 204.32466 * 16 15 14 18 18 C 1.40151 * 120.00110 * 24.32989 * 16 15 14 19 19 N 1.30709 * 119.99794 * 14.27140 * 18 16 15 20 20 Si 1.86805 * 120.00126 * 194.27306 * 18 16 15 21 21 H 1.48496 * 109.46837 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.46700 * 119.99801 * 20 18 16 23 23 H 1.48497 * 109.46954 * 239.99894 * 20 18 16 24 24 C 1.37822 * 119.82953 * 120.00105 * 4 2 1 25 25 H 1.08994 * 109.46906 * 299.99691 * 1 2 3 26 26 H 1.08999 * 109.47568 * 59.99991 * 1 2 3 27 27 H 1.09005 * 109.47069 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47047 * 240.00239 * 2 1 3 29 29 H 1.08999 * 109.47378 * 300.00203 * 3 2 1 30 30 H 1.09000 * 109.47137 * 59.99924 * 3 2 1 31 31 H 1.09002 * 109.47133 * 180.02562 * 3 2 1 32 32 H 1.07995 * 119.79578 * 0.02562 * 5 4 2 33 33 H 1.08000 * 119.96788 * 179.97438 * 6 5 4 34 34 H 0.96995 * 120.00050 * 0.02562 * 8 7 6 35 35 H 0.96998 * 119.99819 * 179.97438 * 8 7 6 36 36 H 1.08003 * 119.67688 * 0.02562 * 11 10 9 37 37 H 1.07992 * 119.23256 * 179.69838 * 13 12 11 38 38 H 1.07999 * 120.44058 * 180.02562 * 14 13 12 39 39 H 0.97000 * 119.99657 * 180.02562 * 19 18 16 40 40 H 1.08000 * 120.04237 * 359.72483 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6951 -0.2342 2.4874 6 6 2.1485 -0.8761 3.6230 7 6 2.9468 -2.0060 3.5114 8 7 3.4053 -2.6543 4.6545 9 6 3.2905 -2.4912 2.2391 10 6 4.1384 -3.6924 2.1066 11 6 5.4068 -3.6111 1.5329 12 7 6.1624 -4.6830 1.4210 13 6 5.7663 -5.8777 1.8272 14 6 4.5416 -6.0677 2.3973 15 6 3.6786 -4.9621 2.5557 16 6 2.4054 -5.1103 3.1393 17 1 1.6223 -4.4015 2.9139 18 6 2.1548 -6.1774 4.0126 19 7 3.1503 -6.8663 4.5052 20 14 0.3979 -6.6151 4.4724 21 1 -0.5386 -5.6892 3.7864 22 1 0.1100 -8.0107 4.0545 23 1 0.2260 -6.4931 5.9423 24 6 2.8246 -1.8306 1.0998 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.0732 0.6439 2.5795 33 1 1.8816 -0.4986 4.5990 34 1 3.1667 -2.3168 5.5320 35 1 3.9627 -3.4439 4.5736 36 1 5.7746 -2.6585 1.1812 37 1 6.4280 -6.7224 1.7051 38 1 4.2363 -7.0511 2.7231 39 1 2.9768 -7.6052 5.1094 40 1 3.0805 -2.2004 0.1179 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244227557.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:51 Heat of formation + Delta-G solvation = 25.004261 kcal Electronic energy + Delta-G solvation = -21846.351298 eV Core-core repulsion = 18817.077275 eV Total energy + Delta-G solvation = -3029.274024 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.27649 -37.95964 -35.68430 -34.20523 -32.54861 -31.74115 -30.20795 -28.62815 -27.10570 -26.91881 -25.85404 -22.89301 -22.00763 -21.34308 -20.89992 -18.82668 -17.59131 -16.39412 -16.17091 -15.61816 -15.07535 -14.53685 -14.36245 -14.26039 -13.71831 -13.21047 -13.07380 -12.96196 -12.70473 -12.30474 -12.27606 -12.20608 -12.08275 -11.91729 -11.48621 -11.31953 -11.10706 -10.96255 -10.82051 -10.52517 -10.27024 -10.21111 -9.72809 -9.65677 -9.49265 -8.33463 -8.04148 -7.82914 -7.54321 -6.95673 -6.46582 -4.65346 2.07559 2.36525 2.67003 2.81304 2.97010 3.03456 3.18808 3.78655 4.55584 4.59914 4.78765 5.12767 5.16962 5.49403 5.53723 5.63383 5.69961 5.79089 5.81113 5.86911 6.01062 6.03319 6.06330 6.20441 6.30689 6.31958 6.47887 6.50836 6.62714 6.77699 6.82721 6.88182 7.05722 7.09436 7.25506 7.30557 7.43897 7.49693 7.66358 7.84382 8.05757 8.34645 8.44881 8.63614 8.65853 8.71989 9.61293 9.93995 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014871 B = 0.006471 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.466373 B = 4326.243645 C = 5307.843504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.045 4.045 3 C -0.140 4.140 4 C -0.150 4.150 5 C -0.081 4.081 6 C -0.214 4.214 7 C 0.239 3.761 8 N -0.859 5.859 9 C -0.059 4.059 10 C -0.223 4.223 11 C 0.124 3.876 12 N -0.578 5.578 13 C 0.078 3.922 14 C -0.211 4.211 15 C 0.137 3.863 16 C -0.428 4.428 17 H 0.083 0.917 18 C 0.078 3.922 19 N -0.783 5.783 20 Si 0.907 3.093 21 H -0.258 1.258 22 H -0.271 1.271 23 H -0.273 1.273 24 C -0.070 4.070 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.385 0.615 35 H 0.409 0.591 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.128 0.872 39 H 0.283 0.717 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.601 8.441 -1.299 9.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.064 4.064 3 C -0.198 4.198 4 C -0.152 4.152 5 C -0.099 4.099 6 C -0.237 4.237 7 C 0.131 3.869 8 N -0.395 5.395 9 C -0.064 4.064 10 C -0.228 4.228 11 C -0.034 4.034 12 N -0.293 5.293 13 C -0.070 4.070 14 C -0.233 4.233 15 C 0.129 3.871 16 C -0.459 4.459 17 H 0.101 0.899 18 C -0.142 4.142 19 N -0.408 5.408 20 Si 0.731 3.269 21 H -0.182 1.182 22 H -0.196 1.196 23 H -0.199 1.199 24 C -0.089 4.089 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.211 0.789 35 H 0.240 0.760 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.145 0.855 39 H 0.094 0.906 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.682 8.266 -1.522 9.176 hybrid contribution -1.575 -0.678 1.117 2.046 sum -5.257 7.588 -0.405 9.240 Atomic orbital electron populations 1.21846 0.95359 1.01755 1.00909 1.19913 0.95104 0.95341 0.96017 1.21844 1.01122 0.95870 1.00946 1.19261 1.03613 0.98515 0.93791 1.20434 0.99180 0.98719 0.91616 1.20331 1.06179 0.99091 0.98137 1.17856 0.91406 0.90253 0.87353 1.42442 1.58651 1.33864 1.04524 1.18096 1.01552 0.96286 0.90480 1.19438 0.96247 0.92367 1.14762 1.22128 0.90333 0.95571 0.95360 1.67303 1.37202 0.99366 1.25414 1.21703 0.94857 0.93878 0.96576 1.21973 0.95913 1.00325 1.05075 1.17796 0.92426 0.89201 0.87698 1.19530 0.96984 1.08091 1.21265 0.89869 1.26004 0.99131 0.94579 0.94494 1.69750 1.32925 1.15815 1.22297 0.86249 0.82404 0.79365 0.78837 1.18162 1.19590 1.19872 1.20905 0.96387 0.94298 0.97333 0.92854 0.93331 0.92635 0.91271 0.93332 0.92851 0.92730 0.87636 0.87469 0.78930 0.76010 0.86340 0.86673 0.85463 0.90594 0.87178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.00 37.16 0.33 -1.39 16 2 C -0.05 -0.61 3.09 -91.77 -0.28 -0.89 16 3 C -0.14 -1.64 9.01 37.16 0.33 -1.31 16 4 C -0.15 -2.46 4.78 -104.65 -0.50 -2.96 16 5 C -0.08 -1.29 8.69 -39.50 -0.34 -1.64 16 6 C -0.21 -3.67 9.88 -39.42 -0.39 -4.06 16 7 C 0.24 4.64 6.13 -83.49 -0.51 4.13 16 8 N -0.86 -15.98 8.40 32.59 0.27 -15.71 16 9 C -0.06 -1.23 4.50 -104.69 -0.47 -1.70 16 10 C -0.22 -5.12 4.57 -104.05 -0.48 -5.60 16 11 C 0.12 2.85 10.92 -17.19 -0.19 2.66 16 12 N -0.58 -13.88 10.32 -13.35 -0.14 -14.02 16 13 C 0.08 1.84 11.08 -18.02 -0.20 1.64 16 14 C -0.21 -5.19 8.73 -39.13 -0.34 -5.53 16 15 C 0.14 3.37 4.76 -106.25 -0.51 2.86 16 16 C -0.43 -10.38 7.26 -37.88 -0.27 -10.65 16 17 H 0.08 2.09 7.18 -52.49 -0.38 1.71 16 18 C 0.08 1.79 5.25 -17.31 -0.09 1.70 16 19 N -0.78 -18.32 10.80 55.56 0.60 -17.72 16 20 Si 0.91 17.82 29.58 -169.99 -5.03 12.79 16 21 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 22 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 23 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 24 C -0.07 -1.33 9.36 -39.19 -0.37 -1.69 16 25 H 0.05 0.63 7.37 -51.93 -0.38 0.24 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.93 7.86 -51.92 -0.41 0.52 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.60 7.37 -51.93 -0.38 0.22 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.11 1.45 7.07 -52.49 -0.37 1.07 16 33 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.38 5.98 8.84 -40.82 -0.36 5.62 16 35 H 0.41 8.61 6.62 -40.82 -0.27 8.34 16 36 H 0.12 2.48 8.06 -52.48 -0.42 2.06 16 37 H 0.12 2.43 8.06 -52.49 -0.42 2.00 16 38 H 0.13 3.20 6.13 -52.49 -0.32 2.87 16 39 H 0.28 6.06 8.29 -40.82 -0.34 5.73 16 40 H 0.11 2.03 7.93 -52.49 -0.42 1.62 16 LS Contribution 328.84 15.07 4.96 4.96 Total: -1.00 -25.80 328.84 -9.00 -34.80 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: -5.38 Total: 19.34 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: -4.27 Total: -24.43 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.74 Total: -47.45 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -25.80 -9.00 -34.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244227557.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.800 kcal (2) G-P(sol) polarization free energy of solvation -25.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds