Wall clock time and date at job start Tue Mar 31 2020 05:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50696 * 109.47049 * 2 1 4 4 C 1.37697 * 119.96185 * 264.99734 * 3 2 1 5 5 C 1.39749 * 119.92701 * 180.02562 * 4 3 2 6 6 C 1.47780 * 120.06580 * 180.02562 * 5 4 3 7 7 C 1.39994 * 119.45991 * 179.97438 * 6 5 4 8 8 C 1.36539 * 119.46832 * 180.28192 * 7 6 5 9 9 C 1.41349 * 118.41711 * 359.44324 * 8 7 6 10 10 C 1.41016 * 120.54116 * 180.29114 * 9 8 7 11 11 H 1.08008 * 119.99090 * 205.25765 * 10 9 8 12 12 C 1.39972 * 120.00379 * 25.25897 * 10 9 8 13 13 N 1.30818 * 120.00430 * 14.41625 * 12 10 9 14 14 Si 1.86804 * 119.99897 * 194.42340 * 12 10 9 15 15 H 1.48499 * 109.47546 * 59.99511 * 14 12 10 16 16 H 1.48500 * 109.47233 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46851 * 299.99642 * 14 12 10 18 18 C 1.40955 * 118.90705 * 0.59325 * 9 8 7 19 19 C 1.50702 * 119.79560 * 179.68895 * 18 9 8 20 20 N 1.31248 * 120.40668 * 359.67392 * 18 9 8 21 21 C 1.39780 * 119.86605 * 0.27350 * 5 4 3 22 22 C 1.37650 * 119.93180 * 359.46934 * 21 5 4 23 23 C 1.39173 * 119.97024 * 85.02499 * 3 2 1 24 24 N 1.39265 * 119.92910 * 359.97273 * 23 3 2 25 25 H 1.09004 * 109.46941 * 300.00155 * 1 2 3 26 26 H 1.09001 * 109.47076 * 60.00122 * 1 2 3 27 27 H 1.08997 * 109.47448 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47080 * 239.99255 * 2 1 3 29 29 H 1.09001 * 109.47076 * 119.99878 * 2 1 3 30 30 H 1.08000 * 120.03260 * 0.02562 * 4 3 2 31 31 H 1.08003 * 120.26667 * 0.02562 * 7 6 5 32 32 H 1.08000 * 120.79341 * 179.72948 * 8 7 6 33 33 H 0.96994 * 120.00589 * 180.02562 * 13 12 10 34 34 H 1.08996 * 109.47087 * 269.98006 * 19 18 9 35 35 H 1.09006 * 109.47039 * 29.98362 * 19 18 9 36 36 H 1.08999 * 109.47091 * 149.98167 * 19 18 9 37 37 H 1.08000 * 120.03604 * 179.70100 * 21 5 4 38 38 H 1.07996 * 119.96789 * 180.27017 * 22 21 5 39 39 H 0.96999 * 119.99807 * 0.02562 * 24 23 3 40 40 H 0.96995 * 120.00159 * 180.02562 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3596 2.0345 -1.1884 5 6 2.8259 3.3519 -1.1875 6 6 3.1775 4.0137 -2.4612 7 6 3.6428 5.3339 -2.4456 8 6 3.9623 5.9475 -3.6228 9 6 3.8207 5.2148 -4.8233 10 6 4.1436 5.8026 -6.0638 11 1 3.6792 5.4413 -6.9696 12 6 5.0659 6.8539 -6.1213 13 7 5.8339 7.1074 -5.0930 14 14 5.2000 7.8953 -7.6663 15 1 3.8942 8.5482 -7.9382 16 1 6.2423 8.9353 -7.4734 17 1 5.5697 7.0304 -8.8155 18 6 3.3454 3.8893 -4.7605 19 6 3.1801 3.0922 -6.0288 20 7 3.0461 3.3450 -3.6044 21 6 2.9639 4.0406 0.0210 22 6 2.6301 3.4235 1.2052 23 6 2.1655 2.1111 1.2011 24 7 1.8336 1.4876 2.4014 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 2.2561 1.4982 -2.1201 31 1 3.7444 5.8643 -1.5103 32 1 4.3190 6.9668 -3.6360 33 1 6.4727 7.8361 -5.1327 34 1 2.1751 3.2416 -6.4234 35 1 3.9126 3.4242 -6.7646 36 1 3.3331 2.0343 -5.8155 37 1 3.3286 5.0572 0.0253 38 1 2.7323 3.9565 2.1389 39 1 1.5105 0.5731 2.3996 40 1 1.9257 1.9679 3.2390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244294784.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:21 Heat of formation + Delta-G solvation = 27.471912 kcal Electronic energy + Delta-G solvation = -20989.512985 eV Core-core repulsion = 17960.345966 eV Total energy + Delta-G solvation = -3029.167018 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.34909 -38.24652 -34.86322 -33.86158 -33.43936 -31.61995 -30.70211 -29.20034 -28.06342 -26.89650 -24.67129 -23.61834 -22.24268 -21.37183 -20.37344 -19.34563 -17.38865 -16.82552 -16.58973 -15.71376 -15.22890 -14.60578 -14.18784 -13.96525 -13.61451 -13.28743 -13.10545 -13.09350 -12.86192 -12.75339 -12.04099 -11.97374 -11.69391 -11.58015 -11.53526 -11.31345 -11.31164 -11.03020 -10.88059 -10.72038 -10.50889 -10.29780 -10.04810 -9.72123 -9.41044 -8.27700 -8.21321 -7.99245 -7.74515 -6.95017 -6.64701 -4.45376 1.81486 1.99067 2.75579 2.96839 2.98757 3.00957 3.24506 3.78913 4.14724 4.30541 4.73712 5.07330 5.12226 5.37779 5.52028 5.56519 5.64813 5.67788 5.81530 5.97736 6.00888 6.10060 6.13772 6.26708 6.36186 6.42615 6.54513 6.60768 6.66902 6.75252 6.79239 6.89534 6.92457 7.02356 7.14994 7.33394 7.38367 7.45464 7.72665 7.83323 7.92898 7.98152 7.98451 8.39014 8.60435 8.70838 9.66371 9.97943 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.031791 B = 0.003772 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.543228 B = 7421.442577 C = 8164.421753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.072 4.072 3 C -0.163 4.163 4 C -0.060 4.060 5 C -0.035 4.035 6 C 0.016 3.984 7 C -0.134 4.134 8 C -0.139 4.139 9 C 0.070 3.930 10 C -0.436 4.436 11 H 0.086 0.914 12 C 0.072 3.928 13 N -0.784 5.784 14 Si 0.914 3.086 15 H -0.262 1.262 16 H -0.277 1.277 17 H -0.262 1.262 18 C 0.007 3.993 19 C -0.071 4.071 20 N -0.452 5.452 21 C -0.087 4.087 22 C -0.193 4.193 23 C 0.192 3.808 24 N -0.884 5.884 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.127 0.873 31 H 0.100 0.900 32 H 0.128 0.872 33 H 0.285 0.715 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.048 0.952 37 H 0.119 0.881 38 H 0.111 0.889 39 H 0.392 0.608 40 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.061 -6.251 8.423 11.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 C -0.167 4.167 4 C -0.079 4.079 5 C -0.038 4.038 6 C -0.119 4.119 7 C -0.154 4.154 8 C -0.164 4.164 9 C 0.066 3.934 10 C -0.465 4.465 11 H 0.104 0.896 12 C -0.148 4.148 13 N -0.408 5.408 14 Si 0.738 3.262 15 H -0.186 1.186 16 H -0.202 1.202 17 H -0.187 1.187 18 C -0.138 4.138 19 C -0.128 4.128 20 N -0.161 5.161 21 C -0.107 4.107 22 C -0.216 4.216 23 C 0.089 3.911 24 N -0.425 5.425 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.145 0.855 31 H 0.118 0.882 32 H 0.145 0.855 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.137 0.863 38 H 0.129 0.871 39 H 0.221 0.779 40 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -5.137 -6.906 8.470 12.075 hybrid contribution 0.516 1.445 -0.215 1.549 sum -4.620 -5.461 8.255 10.923 Atomic orbital electron populations 1.21768 0.95509 1.00862 1.02274 1.20275 0.95515 0.93330 1.01822 1.19213 1.08883 0.96582 0.92012 1.20924 0.96240 0.94114 0.96612 1.18457 1.00460 0.93438 0.91436 1.18768 1.10485 0.92455 0.90173 1.21305 1.00797 0.95425 0.97861 1.21357 1.03088 1.00426 0.91519 1.18392 0.90076 0.90953 0.94027 1.19600 1.19621 1.12784 0.94502 0.89560 1.26049 0.93880 0.96675 0.98186 1.69777 1.14794 1.25468 1.30770 0.86251 0.79090 0.79470 0.81364 1.18615 1.20169 1.18689 1.20981 1.08236 0.92533 0.92056 1.20248 1.00505 0.97837 0.94240 1.66760 1.13599 1.37859 0.97843 1.20932 0.99115 0.99401 0.91235 1.20319 1.09102 0.94126 0.98039 1.17512 0.95830 0.91865 0.85875 1.42317 1.77349 1.17221 1.05633 0.92987 0.92311 0.93070 0.91209 0.92370 0.85525 0.88237 0.85476 0.90380 0.93420 0.91548 0.93257 0.86314 0.87058 0.77938 0.78185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.89 37.16 0.37 -1.28 16 2 C -0.07 -0.90 5.49 -27.88 -0.15 -1.05 16 3 C -0.16 -2.58 5.15 -104.47 -0.54 -3.12 16 4 C -0.06 -1.13 9.19 -39.21 -0.36 -1.49 16 5 C -0.04 -0.73 5.88 -104.86 -0.62 -1.35 16 6 C 0.02 0.39 6.74 -82.76 -0.56 -0.17 16 7 C -0.13 -3.19 9.38 -39.54 -0.37 -3.56 16 8 C -0.14 -3.57 8.73 -39.01 -0.34 -3.91 16 9 C 0.07 1.83 5.59 -106.63 -0.60 1.24 16 10 C -0.44 -10.91 8.15 -37.88 -0.31 -11.22 16 11 H 0.09 2.03 6.84 -52.48 -0.36 1.67 16 12 C 0.07 1.70 5.22 -17.33 -0.09 1.61 16 13 N -0.78 -19.30 10.83 55.55 0.60 -18.70 16 14 Si 0.91 17.63 29.58 -169.99 -5.03 12.60 16 15 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 16 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 17 H -0.26 -4.99 7.11 56.52 0.40 -4.58 16 18 C 0.01 0.16 6.86 -81.81 -0.56 -0.40 16 19 C -0.07 -1.48 9.58 36.01 0.34 -1.14 16 20 N -0.45 -11.25 9.30 -5.41 -0.05 -11.30 16 21 C -0.09 -1.58 9.40 -39.22 -0.37 -1.95 16 22 C -0.19 -3.02 9.87 -39.43 -0.39 -3.41 16 23 C 0.19 2.84 6.74 -83.77 -0.56 2.27 16 24 N -0.88 -9.48 8.97 32.44 0.29 -9.19 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.88 8.05 -51.93 -0.42 0.46 16 29 H 0.06 0.62 6.80 -51.93 -0.35 0.27 16 30 H 0.13 2.49 7.51 -52.49 -0.39 2.10 16 31 H 0.10 2.10 6.14 -52.48 -0.32 1.77 16 32 H 0.13 3.29 6.18 -52.49 -0.32 2.97 16 33 H 0.29 6.37 8.30 -40.82 -0.34 6.04 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.36 6.75 -51.93 -0.35 1.01 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.12 2.04 6.14 -52.49 -0.32 1.72 16 38 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 39 H 0.39 3.61 6.91 -40.82 -0.28 3.33 16 40 H 0.39 3.39 8.83 -40.82 -0.36 3.03 16 LS Contribution 329.08 15.07 4.96 4.96 Total: -1.00 -28.16 329.08 -9.49 -37.65 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -5.16 Total: 12.90 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: -5.10 Total: -28.93 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.84 Total: -39.18 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.60 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.16 -9.49 -37.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244294784.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.122 kcal (2) G-P(sol) polarization free energy of solvation -28.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds