Wall clock time and date at job start Tue Mar 31 2020 05:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46938 * 2 1 4 4 C 1.37661 * 119.96369 * 265.02064 * 3 2 1 5 5 C 1.39818 * 119.92794 * 179.97438 * 4 3 2 6 6 C 1.47615 * 120.07652 * 180.02562 * 5 4 3 7 7 N 1.32670 * 120.00278 * 316.80788 * 6 5 4 8 8 C 1.31722 * 121.70827 * 179.97438 * 7 6 5 9 9 C 1.50706 * 119.23826 * 180.02562 * 8 7 6 10 10 C 1.38884 * 121.52213 * 359.97438 * 8 7 6 11 11 C 1.36867 * 119.81468 * 0.02562 * 10 8 7 12 12 C 1.41123 * 118.40638 * 359.72563 * 11 10 8 13 13 C 1.40834 * 120.72663 * 180.29310 * 12 11 10 14 14 H 1.07999 * 120.00385 * 150.70700 * 13 12 11 15 15 C 1.40030 * 119.99991 * 330.70725 * 13 12 11 16 16 N 1.30794 * 120.00174 * 162.89420 * 15 13 12 17 17 Si 1.86804 * 119.99693 * 342.89300 * 15 13 12 18 18 H 1.48499 * 109.47102 * 90.53581 * 17 15 13 19 19 H 1.48504 * 109.47123 * 210.53517 * 17 15 13 20 20 H 1.48497 * 109.47365 * 330.53528 * 17 15 13 21 21 C 1.39865 * 119.84994 * 359.75049 * 5 4 3 22 22 C 1.37617 * 119.92128 * 0.52689 * 21 5 4 23 23 C 1.39197 * 119.96446 * 85.00523 * 3 2 1 24 24 N 1.39236 * 119.92266 * 0.02562 * 23 3 2 25 25 H 1.08999 * 109.47164 * 59.99871 * 1 2 3 26 26 H 1.09001 * 109.47069 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47104 * 300.00141 * 1 2 3 28 28 H 1.08994 * 109.47172 * 239.99838 * 2 1 3 29 29 H 1.09004 * 109.46970 * 119.99667 * 2 1 3 30 30 H 1.08005 * 120.04002 * 0.02562 * 4 3 2 31 31 H 1.09000 * 109.47393 * 89.99868 * 9 8 7 32 32 H 1.08999 * 109.46854 * 210.00212 * 9 8 7 33 33 H 1.09002 * 109.47312 * 330.00141 * 9 8 7 34 34 H 1.07997 * 120.09332 * 180.02562 * 10 8 7 35 35 H 1.08004 * 120.79910 * 180.02562 * 11 10 8 36 36 H 0.97004 * 120.00046 * 179.97438 * 16 15 13 37 37 H 1.07998 * 120.03973 * 180.24938 * 21 5 4 38 38 H 1.08000 * 119.96244 * 179.73063 * 22 21 5 39 39 H 0.97006 * 119.99512 * 179.97438 * 24 23 3 40 40 H 0.96997 * 120.00022 * 359.97438 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3591 2.0346 -1.1881 5 6 2.8245 3.3530 -1.1873 6 6 3.1753 4.0145 -2.4595 7 7 3.8648 3.3556 -3.3817 8 6 4.1954 3.9128 -4.5286 9 6 4.9790 3.1125 -5.5370 10 6 3.8376 5.2203 -4.8304 11 6 3.1254 5.9576 -3.9235 12 6 2.7695 5.3535 -2.6988 13 6 2.0317 6.0652 -1.7330 14 1 1.3738 5.5370 -1.0589 15 6 2.1512 7.4577 -1.6468 16 7 1.2485 8.1531 -1.0048 17 14 3.6001 8.3221 -2.4488 18 1 3.2433 8.6991 -3.8401 19 1 3.9370 9.5445 -1.6757 20 1 4.7718 7.4101 -2.4681 21 6 2.9515 4.0457 0.0211 22 6 2.6285 3.4243 1.2058 23 6 2.1651 2.1113 1.2013 24 7 1.8339 1.4875 2.4012 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 2.2553 1.4986 -2.1200 31 1 4.2901 2.5842 -6.1961 32 1 5.6038 3.7833 -6.1267 33 1 5.6099 2.3913 -5.0174 34 1 4.1205 5.6542 -5.7781 35 1 2.8385 6.9757 -4.1419 36 1 1.3315 9.1177 -0.9448 37 1 3.3069 5.0655 0.0250 38 1 2.7305 3.9571 2.1397 39 1 1.9263 1.9676 3.2391 40 1 1.5107 0.5729 2.3993 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244295010.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:26 Heat of formation + Delta-G solvation = 31.203503 kcal Electronic energy + Delta-G solvation = -21606.846621 eV Core-core repulsion = 18577.841417 eV Total energy + Delta-G solvation = -3029.005205 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.33763 -38.36061 -34.65476 -34.00374 -33.31932 -31.75272 -31.16296 -29.08830 -28.22864 -27.33549 -24.11483 -23.48260 -22.39053 -21.15094 -21.01563 -19.34432 -17.50889 -16.69781 -16.38725 -15.83224 -15.40892 -14.66877 -14.03476 -13.81916 -13.64819 -13.54785 -13.24128 -13.02911 -12.97741 -12.69074 -12.34068 -12.05767 -11.87505 -11.67387 -11.60842 -11.49661 -11.23519 -11.01505 -10.80299 -10.62629 -10.26144 -10.14550 -10.02669 -9.72814 -9.48533 -8.46242 -8.14241 -8.05713 -7.71833 -7.08531 -6.68495 -4.53001 1.96118 2.19452 2.51730 2.80060 3.00423 3.12005 3.21777 3.85043 4.28193 4.41275 4.59498 5.18934 5.21690 5.32672 5.47879 5.61348 5.64177 5.83128 5.86566 5.92019 6.01038 6.11021 6.18065 6.22014 6.27155 6.31488 6.38231 6.38764 6.48356 6.56284 6.65283 6.87166 6.89970 6.98838 7.01708 7.29110 7.36822 7.49908 7.58287 7.73132 7.82975 8.02065 8.11944 8.21457 8.45486 8.61538 9.45261 9.90942 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014870 B = 0.006497 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.502608 B = 4308.844884 C = 5681.288865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.069 4.069 3 C -0.174 4.174 4 C -0.054 4.054 5 C -0.041 4.041 6 C 0.056 3.944 7 N -0.444 5.444 8 C -0.018 4.018 9 C -0.073 4.073 10 C -0.119 4.119 11 C -0.211 4.211 12 C 0.057 3.943 13 C -0.422 4.422 14 H 0.104 0.896 15 C 0.083 3.917 16 N -0.793 5.793 17 Si 0.909 3.091 18 H -0.267 1.267 19 H -0.288 1.288 20 H -0.247 1.247 21 C -0.042 4.042 22 C -0.202 4.202 23 C 0.204 3.796 24 N -0.883 5.883 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.115 0.885 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.288 0.712 37 H 0.132 0.868 38 H 0.112 0.888 39 H 0.392 0.608 40 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.281 -8.205 2.918 8.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 C -0.179 4.179 4 C -0.074 4.074 5 C -0.044 4.044 6 C -0.086 4.086 7 N -0.152 5.152 8 C -0.156 4.156 9 C -0.131 4.131 10 C -0.139 4.139 11 C -0.236 4.236 12 C 0.051 3.949 13 C -0.450 4.450 14 H 0.122 0.878 15 C -0.138 4.138 16 N -0.416 5.416 17 Si 0.736 3.264 18 H -0.194 1.194 19 H -0.215 1.215 20 H -0.170 1.170 21 C -0.061 4.061 22 C -0.224 4.224 23 C 0.101 3.899 24 N -0.424 5.424 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.133 0.867 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.120 0.880 35 H 0.129 0.871 36 H 0.099 0.901 37 H 0.150 0.850 38 H 0.130 0.870 39 H 0.219 0.781 40 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 1.414 -8.795 3.119 9.438 hybrid contribution 0.059 1.500 -0.235 1.519 sum 1.472 -7.296 2.883 7.982 Atomic orbital electron populations 1.21778 0.95635 1.00678 1.02379 1.20239 0.95407 0.93424 1.01590 1.19067 1.10253 0.96578 0.91972 1.20835 0.96280 0.94000 0.96237 1.18115 1.01968 0.92991 0.91296 1.19483 1.03085 0.92659 0.93323 1.66950 1.09859 1.37477 1.00888 1.20255 1.07326 0.93134 0.94891 1.20280 0.98052 0.98581 0.96207 1.21132 0.98891 0.95221 0.98636 1.21172 1.06826 1.00420 0.95187 1.18468 0.91043 0.92852 0.92497 1.19498 1.19903 0.91172 1.14420 0.87849 1.26217 0.96665 0.97664 0.93243 1.69666 1.30709 1.09056 1.32173 0.86383 0.82834 0.78501 0.78710 1.19350 1.21533 1.16982 1.21175 0.95010 0.99424 0.90519 1.20397 1.09817 0.93858 0.98369 1.17557 0.94816 0.91786 0.85760 1.42333 1.77188 1.17148 1.05744 0.92393 0.93227 0.92878 0.91485 0.92450 0.86712 0.93082 0.92926 0.92409 0.88027 0.87140 0.90139 0.85034 0.87000 0.78122 0.78029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.89 37.16 0.37 -1.43 16 2 C -0.07 -0.92 5.49 -27.88 -0.15 -1.07 16 3 C -0.17 -2.96 5.15 -104.48 -0.54 -3.50 16 4 C -0.05 -1.07 9.27 -39.20 -0.36 -1.44 16 5 C -0.04 -0.92 5.28 -104.87 -0.55 -1.47 16 6 C 0.06 1.37 6.43 -82.26 -0.53 0.84 16 7 N -0.44 -10.56 10.05 -5.46 -0.05 -10.61 16 8 C -0.02 -0.39 6.79 -82.40 -0.56 -0.95 16 9 C -0.07 -1.27 10.15 36.01 0.37 -0.90 16 10 C -0.12 -2.60 9.64 -39.84 -0.38 -2.99 16 11 C -0.21 -5.05 7.31 -38.98 -0.29 -5.34 16 12 C 0.06 1.43 5.12 -106.40 -0.54 0.88 16 13 C -0.42 -10.85 7.17 -37.93 -0.27 -11.12 16 14 H 0.10 2.82 6.70 -52.49 -0.35 2.46 16 15 C 0.08 2.06 5.43 -17.32 -0.09 1.97 16 16 N -0.79 -20.02 13.93 55.55 0.77 -19.25 16 17 Si 0.91 20.02 24.53 -169.99 -4.17 15.85 16 18 H -0.27 -5.72 6.47 56.52 0.37 -5.35 16 19 H -0.29 -6.09 7.11 56.52 0.40 -5.68 16 20 H -0.25 -5.66 7.00 56.52 0.40 -5.27 16 21 C -0.04 -0.88 7.84 -39.20 -0.31 -1.19 16 22 C -0.20 -3.65 9.87 -39.44 -0.39 -4.04 16 23 C 0.20 3.34 6.74 -83.77 -0.56 2.78 16 24 N -0.88 -10.75 8.97 32.44 0.29 -10.45 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.88 8.05 -51.93 -0.42 0.46 16 29 H 0.06 0.66 6.80 -51.93 -0.35 0.31 16 30 H 0.11 2.27 8.06 -52.48 -0.42 1.84 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.79 8.07 -51.93 -0.42 0.37 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 35 H 0.11 2.58 4.53 -52.48 -0.24 2.35 16 36 H 0.29 6.59 8.30 -40.82 -0.34 6.25 16 37 H 0.13 2.92 6.70 -52.49 -0.35 2.56 16 38 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.39 4.02 8.83 -40.82 -0.36 3.66 16 40 H 0.39 4.06 6.91 -40.82 -0.28 3.78 16 LS Contribution 325.39 15.07 4.90 4.90 Total: -1.00 -27.98 325.39 -8.39 -36.37 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -5.33 Total: 12.17 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: -4.80 Total: -28.98 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 1.01 Total: -40.32 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.17 Total: 15.85 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.98 -8.39 -36.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244295010.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.576 kcal (2) G-P(sol) polarization free energy of solvation -27.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds