Wall clock time and date at job start Tue Mar 31 2020 05:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46938 * 2 1 4 4 C 1.37661 * 119.96369 * 265.02064 * 3 2 1 5 5 C 1.39818 * 119.92794 * 179.97438 * 4 3 2 6 6 C 1.47615 * 120.07652 * 180.02562 * 5 4 3 7 7 N 1.32670 * 120.00278 * 316.80788 * 6 5 4 8 8 C 1.31722 * 121.70827 * 179.97438 * 7 6 5 9 9 C 1.50706 * 119.23826 * 180.02562 * 8 7 6 10 10 C 1.38884 * 121.52213 * 359.97438 * 8 7 6 11 11 C 1.36867 * 119.81468 * 0.02562 * 10 8 7 12 12 C 1.41123 * 118.40638 * 359.72563 * 11 10 8 13 13 C 1.40834 * 120.72663 * 180.29310 * 12 11 10 14 14 H 1.07999 * 120.00385 * 150.70700 * 13 12 11 15 15 C 1.40030 * 119.99991 * 330.70725 * 13 12 11 16 16 N 1.30794 * 120.00174 * 162.89420 * 15 13 12 17 17 Si 1.86804 * 119.99693 * 342.89300 * 15 13 12 18 18 H 1.48499 * 109.47102 * 90.53581 * 17 15 13 19 19 H 1.48504 * 109.47123 * 210.53517 * 17 15 13 20 20 H 1.48497 * 109.47365 * 330.53528 * 17 15 13 21 21 C 1.39865 * 119.84994 * 359.75049 * 5 4 3 22 22 C 1.37617 * 119.92128 * 0.52689 * 21 5 4 23 23 C 1.39197 * 119.96446 * 85.00523 * 3 2 1 24 24 N 1.39236 * 119.92266 * 0.02562 * 23 3 2 25 25 H 1.08999 * 109.47164 * 59.99871 * 1 2 3 26 26 H 1.09001 * 109.47069 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47104 * 300.00141 * 1 2 3 28 28 H 1.08994 * 109.47172 * 239.99838 * 2 1 3 29 29 H 1.09004 * 109.46970 * 119.99667 * 2 1 3 30 30 H 1.08005 * 120.04002 * 0.02562 * 4 3 2 31 31 H 1.09000 * 109.47393 * 89.99868 * 9 8 7 32 32 H 1.08999 * 109.46854 * 210.00212 * 9 8 7 33 33 H 1.09002 * 109.47312 * 330.00141 * 9 8 7 34 34 H 1.07997 * 120.09332 * 180.02562 * 10 8 7 35 35 H 1.08004 * 120.79910 * 180.02562 * 11 10 8 36 36 H 0.97004 * 120.00046 * 179.97438 * 16 15 13 37 37 H 1.07998 * 120.03973 * 180.24938 * 21 5 4 38 38 H 1.08000 * 119.96244 * 179.73063 * 22 21 5 39 39 H 0.97006 * 119.99512 * 179.97438 * 24 23 3 40 40 H 0.96997 * 120.00022 * 359.97438 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3591 2.0346 -1.1881 5 6 2.8245 3.3530 -1.1873 6 6 3.1753 4.0145 -2.4595 7 7 3.8648 3.3556 -3.3817 8 6 4.1954 3.9128 -4.5286 9 6 4.9790 3.1125 -5.5370 10 6 3.8376 5.2203 -4.8304 11 6 3.1254 5.9576 -3.9235 12 6 2.7695 5.3535 -2.6988 13 6 2.0317 6.0652 -1.7330 14 1 1.3738 5.5370 -1.0589 15 6 2.1512 7.4577 -1.6468 16 7 1.2485 8.1531 -1.0048 17 14 3.6001 8.3221 -2.4488 18 1 3.2433 8.6991 -3.8401 19 1 3.9370 9.5445 -1.6757 20 1 4.7718 7.4101 -2.4681 21 6 2.9515 4.0457 0.0211 22 6 2.6285 3.4243 1.2058 23 6 2.1651 2.1113 1.2013 24 7 1.8339 1.4875 2.4012 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 2.2553 1.4986 -2.1200 31 1 4.2901 2.5842 -6.1961 32 1 5.6038 3.7833 -6.1267 33 1 5.6099 2.3913 -5.0174 34 1 4.1205 5.6542 -5.7781 35 1 2.8385 6.9757 -4.1419 36 1 1.3315 9.1177 -0.9448 37 1 3.3069 5.0655 0.0250 38 1 2.7305 3.9571 2.1397 39 1 1.9263 1.9676 3.2391 40 1 1.5107 0.5729 2.3993 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244295010.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:25 Heat of formation + Delta-G solvation = 14.838330 kcal Electronic energy + Delta-G solvation = -21607.556268 eV Core-core repulsion = 18577.841417 eV Total energy + Delta-G solvation = -3029.714852 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.94298 -39.93517 -36.25310 -35.64431 -34.51423 -33.51608 -32.81898 -30.46503 -29.78802 -28.87175 -25.81842 -24.72263 -24.01941 -22.76801 -22.59982 -20.83130 -19.38412 -17.99126 -17.73910 -17.54806 -17.04015 -16.31097 -15.52513 -15.30670 -15.26045 -14.96268 -14.77620 -14.47652 -14.32013 -14.14192 -13.97227 -13.70182 -13.42899 -13.07669 -12.99531 -12.92459 -12.72028 -12.54154 -12.40042 -12.00144 -11.83566 -11.67698 -11.50804 -11.32092 -11.25545 -10.25258 -9.93552 -9.58975 -9.41759 -8.94347 -8.08879 -6.42520 0.28777 0.69488 0.73755 1.11365 1.21134 1.35894 1.43353 2.05790 2.59288 3.03559 3.15643 3.53576 3.79410 4.00862 4.06373 4.20108 4.31266 4.38306 4.54802 4.57026 4.62600 4.71417 4.77363 4.82764 4.85077 4.97586 5.00016 5.04184 5.08251 5.18418 5.24348 5.33954 5.35109 5.46582 5.54297 5.62859 5.63951 5.85026 6.02218 6.09348 6.13084 6.29246 6.61338 6.70774 6.74070 7.13202 7.64796 8.10850 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014870 B = 0.006497 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.502608 B = 4308.844884 C = 5681.288865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.067 4.067 3 C -0.173 4.173 4 C -0.062 4.062 5 C -0.080 4.080 6 C 0.046 3.954 7 N -0.464 5.464 8 C -0.016 4.016 9 C -0.070 4.070 10 C -0.127 4.127 11 C -0.222 4.222 12 C 0.032 3.968 13 C -0.442 4.442 14 H 0.071 0.929 15 C 0.054 3.946 16 N -0.830 5.830 17 Si 0.957 3.043 18 H -0.253 1.253 19 H -0.272 1.272 20 H -0.265 1.265 21 C -0.058 4.058 22 C -0.209 4.209 23 C 0.218 3.782 24 N -0.861 5.861 25 H 0.037 0.963 26 H 0.077 0.923 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.140 0.860 35 H 0.114 0.886 36 H 0.296 0.704 37 H 0.106 0.894 38 H 0.132 0.868 39 H 0.405 0.595 40 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.013 -10.068 2.697 10.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.104 4.104 3 C -0.178 4.178 4 C -0.082 4.082 5 C -0.083 4.083 6 C -0.094 4.094 7 N -0.172 5.172 8 C -0.155 4.155 9 C -0.128 4.128 10 C -0.146 4.146 11 C -0.247 4.247 12 C 0.028 3.972 13 C -0.471 4.471 14 H 0.090 0.910 15 C -0.163 4.163 16 N -0.455 5.455 17 Si 0.781 3.219 18 H -0.178 1.178 19 H -0.199 1.199 20 H -0.190 1.190 21 C -0.078 4.078 22 C -0.232 4.232 23 C 0.112 3.888 24 N -0.403 5.403 25 H 0.056 0.944 26 H 0.096 0.904 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.127 0.873 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.158 0.842 35 H 0.131 0.869 36 H 0.107 0.893 37 H 0.124 0.876 38 H 0.150 0.850 39 H 0.235 0.765 40 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 2.122 -10.679 2.941 11.278 hybrid contribution -0.138 1.838 -0.163 1.850 sum 1.984 -8.841 2.779 9.478 Atomic orbital electron populations 1.21745 0.94640 1.02257 1.01459 1.20320 0.96102 0.90888 1.03104 1.19436 1.08938 0.98403 0.91046 1.20859 0.96787 0.93197 0.97325 1.18230 1.04748 0.94374 0.90901 1.19921 1.02449 0.92712 0.94329 1.67105 1.10495 1.37903 1.01733 1.21224 1.05641 0.93712 0.94887 1.20384 0.98234 0.98791 0.95385 1.21545 0.98190 0.95188 0.99714 1.21376 1.07258 1.00906 0.95208 1.18681 0.91755 0.93667 0.93123 1.19278 1.20991 0.91780 1.15101 0.91048 1.26726 0.98265 0.97693 0.93651 1.69678 1.32081 1.09749 1.34007 0.85654 0.79574 0.77668 0.78965 1.17821 1.19868 1.18961 1.21032 0.96520 0.98565 0.91674 1.20576 1.09693 0.94901 0.98030 1.17570 0.93034 0.91087 0.87147 1.42249 1.75537 1.17703 1.04798 0.94401 0.90399 0.92759 0.91188 0.89759 0.87293 0.91248 0.90031 0.92124 0.84195 0.86862 0.89273 0.87560 0.85040 0.76544 0.76376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.89 71.98 0.71 -2.45 16 2 C -0.07 -1.60 5.49 29.85 0.16 -1.44 16 3 C -0.17 -5.73 5.15 -19.77 -0.10 -5.83 16 4 C -0.06 -2.53 9.27 22.52 0.21 -2.33 16 5 C -0.08 -3.74 5.28 -20.03 -0.11 -3.84 16 6 C 0.05 2.34 6.43 42.41 0.27 2.62 16 7 N -0.46 -22.32 10.05 -171.20 -1.72 -24.04 16 8 C -0.02 -0.67 6.79 42.73 0.29 -0.38 16 9 C -0.07 -2.22 10.15 71.24 0.72 -1.49 16 10 C -0.13 -5.38 9.64 22.10 0.21 -5.17 16 11 C -0.22 -10.73 7.31 22.66 0.17 -10.57 16 12 C 0.03 1.71 5.12 -21.02 -0.11 1.61 16 13 C -0.44 -24.31 7.17 23.34 0.17 -24.14 16 14 H 0.07 4.25 6.70 -2.91 -0.02 4.23 16 15 C 0.05 2.79 5.43 85.28 0.46 3.25 16 16 N -0.83 -43.79 13.93 21.84 0.30 -43.48 16 17 Si 0.96 42.06 24.53 68.60 1.68 43.74 16 18 H -0.25 -10.41 6.47 99.48 0.64 -9.77 16 19 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 20 H -0.27 -12.32 7.00 99.48 0.70 -11.63 16 21 C -0.06 -2.60 7.84 22.52 0.18 -2.43 16 22 C -0.21 -7.66 9.87 22.36 0.22 -7.44 16 23 C 0.22 6.85 6.74 38.44 0.26 7.10 16 24 N -0.86 -18.26 8.97 -51.27 -0.46 -18.72 16 25 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.07 1.67 8.05 -2.39 -0.02 1.65 16 29 H 0.08 1.59 6.80 -2.39 -0.02 1.57 16 30 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 31 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.08 2.11 8.07 -2.39 -0.02 2.09 16 33 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.14 4.78 8.06 -2.91 -0.02 4.75 16 35 H 0.11 5.30 4.53 -2.91 -0.01 5.29 16 36 H 0.30 14.01 8.30 -92.71 -0.77 13.25 16 37 H 0.11 5.18 6.70 -2.91 -0.02 5.16 16 38 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 39 H 0.41 6.98 8.83 -92.70 -0.82 6.16 16 40 H 0.41 6.76 6.91 -92.71 -0.64 6.12 16 Total: -1.00 -64.32 325.39 3.07 -61.24 By element: Atomic # 1 Polarization: 34.65 SS G_CDS: -0.46 Total: 34.19 kcal Atomic # 6 Polarization: -56.65 SS G_CDS: 3.72 Total: -52.93 kcal Atomic # 7 Polarization: -84.37 SS G_CDS: -1.88 Total: -86.25 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 1.68 Total: 43.74 kcal Total: -64.32 3.07 -61.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244295010.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.083 kcal (2) G-P(sol) polarization free energy of solvation -64.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds