Wall clock time and date at job start Tue Mar 31 2020 05:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47323 * 2 1 4 4 C 1.50707 * 109.46810 * 119.99706 * 2 1 3 5 5 C 1.37660 * 119.96524 * 305.55426 * 4 2 1 6 6 C 1.39812 * 119.92612 * 179.97438 * 5 4 2 7 7 C 1.47625 * 120.07692 * 179.97438 * 6 5 4 8 8 N 1.32678 * 119.99789 * 315.83666 * 7 6 5 9 9 C 1.31712 * 121.70723 * 180.02562 * 8 7 6 10 10 C 1.38896 * 121.51831 * 359.97438 * 9 8 7 11 11 C 1.36870 * 119.82009 * 0.02562 * 10 9 8 12 12 C 1.41125 * 118.40135 * 0.02562 * 11 10 9 13 13 C 1.40823 * 120.72225 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00180 * 151.97398 * 13 12 11 15 15 C 1.40035 * 120.00284 * 331.97128 * 13 12 11 16 16 N 1.30805 * 119.99503 * 348.24510 * 15 13 12 17 17 Si 1.86796 * 120.00307 * 168.24221 * 15 13 12 18 18 H 1.48500 * 109.47084 * 90.00464 * 17 15 13 19 19 H 1.48507 * 109.46952 * 210.00115 * 17 15 13 20 20 H 1.48502 * 109.47316 * 330.00150 * 17 15 13 21 21 C 1.39857 * 119.85286 * 0.25689 * 6 5 4 22 22 C 1.37620 * 119.92344 * 359.50967 * 21 6 5 23 23 C 1.39197 * 119.95974 * 125.57668 * 4 2 1 24 24 N 1.39231 * 119.93003 * 359.97438 * 23 4 2 25 25 H 1.09001 * 109.47195 * 300.00117 * 1 2 3 26 26 H 1.09006 * 109.46954 * 60.00150 * 1 2 3 27 27 H 1.08994 * 109.47490 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47082 * 239.99414 * 2 1 3 29 29 H 1.09001 * 109.47565 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47133 * 299.99439 * 3 2 1 31 31 H 1.09001 * 109.47080 * 59.99813 * 3 2 1 32 32 H 1.08003 * 120.03792 * 359.97438 * 5 4 2 33 33 H 1.08003 * 119.24129 * 179.97438 * 9 8 7 34 34 H 1.08001 * 120.09119 * 179.74671 * 10 9 8 35 35 H 1.07992 * 120.79992 * 179.97438 * 11 10 9 36 36 H 0.97001 * 119.99536 * 179.97438 * 16 15 13 37 37 H 1.08003 * 120.03957 * 179.74454 * 21 6 5 38 38 H 1.08002 * 119.96467 * 180.21290 * 22 21 6 39 39 H 0.97008 * 119.99360 * 9.46159 * 24 23 4 40 40 H 0.96995 * 120.00291 * 189.46270 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 1.6076 -0.3098 2.4772 6 6 2.0737 -0.9697 3.6183 7 6 1.6209 -0.5425 4.9569 8 7 1.5680 0.7485 5.2585 9 6 1.1698 1.1670 6.4422 10 6 0.7842 0.2761 7.4355 11 6 0.8147 -1.0704 7.1914 12 6 1.2432 -1.5128 5.9216 13 6 1.2941 -2.8870 5.6180 14 1 1.1732 -3.2194 4.5976 15 6 1.5014 -3.8225 6.6392 16 7 1.8748 -3.4220 7.8271 17 14 1.2446 -5.6423 6.3050 18 1 2.5184 -6.2438 5.8349 19 1 0.8092 -6.3182 7.5535 20 1 0.2022 -5.8117 5.2610 21 6 2.9744 -2.0318 3.4891 22 6 3.3912 -2.4303 2.2395 23 6 2.9254 -1.7706 1.1053 24 7 3.3529 -2.1734 -0.1571 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.9152 0.5135 2.5738 33 1 1.1425 2.2275 6.6451 34 1 0.4655 0.6445 8.3994 35 1 0.5187 -1.7771 7.9523 36 1 2.0180 -4.0700 8.5345 37 1 3.3396 -2.5410 4.3687 38 1 4.0841 -3.2526 2.1388 39 1 3.1406 -1.6350 -0.9356 40 1 3.8629 -2.9922 -0.2581 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244306750.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:07 Heat of formation + Delta-G solvation = 32.714635 kcal Electronic energy + Delta-G solvation = -21689.635231 eV Core-core repulsion = 18660.695554 eV Total energy + Delta-G solvation = -3028.939677 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.34555 -38.10063 -34.95689 -34.12437 -34.02065 -30.67584 -30.35832 -29.19665 -27.21506 -26.91572 -25.47808 -23.13215 -22.20652 -21.37439 -20.33629 -19.08573 -17.38083 -16.82662 -16.39322 -15.72170 -15.27925 -14.37817 -14.14330 -14.11660 -13.69888 -13.39354 -13.15921 -13.11797 -12.80971 -12.27216 -12.10337 -12.07273 -11.87054 -11.57321 -11.38845 -11.37235 -11.09507 -11.01213 -10.91899 -10.61398 -10.36530 -10.09344 -9.86956 -9.64836 -9.39101 -8.24938 -8.03320 -7.98775 -7.63122 -6.90120 -6.59463 -4.45101 2.09476 2.21509 2.70972 3.01200 3.04137 3.07643 3.21092 3.84742 4.27420 4.56133 4.65426 5.03870 5.13309 5.46157 5.56301 5.65220 5.72826 5.80250 5.81116 6.01387 6.04615 6.06658 6.22120 6.26512 6.31758 6.40105 6.46708 6.51428 6.59107 6.73927 6.86941 6.93320 7.04838 7.08116 7.11838 7.37256 7.57463 7.63461 7.77424 7.90583 7.96975 8.06514 8.12901 8.45176 8.66558 8.74375 9.64895 10.05705 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.015241 B = 0.006307 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.684904 B = 4438.476239 C = 5734.613380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.040 4.040 3 C -0.143 4.143 4 C -0.165 4.165 5 C -0.055 4.055 6 C -0.031 4.031 7 C 0.029 3.971 8 N -0.457 5.457 9 C -0.033 4.033 10 C -0.154 4.154 11 C -0.130 4.130 12 C 0.082 3.918 13 C -0.439 4.439 14 H 0.088 0.912 15 C 0.073 3.927 16 N -0.793 5.793 17 Si 0.909 3.091 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.259 1.259 21 C -0.049 4.049 22 C -0.202 4.202 23 C 0.197 3.803 24 N -0.886 5.886 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.096 0.904 35 H 0.126 0.874 36 H 0.283 0.717 37 H 0.131 0.869 38 H 0.110 0.890 39 H 0.390 0.610 40 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.528 0.584 -10.830 10.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.059 4.059 3 C -0.200 4.200 4 C -0.169 4.169 5 C -0.075 4.075 6 C -0.034 4.034 7 C -0.109 4.109 8 N -0.165 5.165 9 C -0.193 4.193 10 C -0.174 4.174 11 C -0.156 4.156 12 C 0.077 3.923 13 C -0.469 4.469 14 H 0.106 0.894 15 C -0.145 4.145 16 N -0.418 5.418 17 Si 0.733 3.267 18 H -0.192 1.192 19 H -0.201 1.201 20 H -0.183 1.183 21 C -0.068 4.068 22 C -0.224 4.224 23 C 0.095 3.905 24 N -0.429 5.429 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.115 0.885 35 H 0.144 0.856 36 H 0.094 0.906 37 H 0.149 0.851 38 H 0.128 0.872 39 H 0.220 0.780 40 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 0.812 1.125 -11.137 11.224 hybrid contribution -0.177 -1.605 0.547 1.705 sum 0.636 -0.480 -10.590 10.620 Atomic orbital electron populations 1.21855 0.94953 1.01757 1.01444 1.19791 0.95511 0.95344 0.95241 1.21862 1.00926 0.95699 1.01526 1.19050 1.02824 1.00330 0.94746 1.20794 0.98173 0.98093 0.90424 1.18190 0.97854 0.96242 0.91099 1.19557 1.08401 0.88335 0.94630 1.67091 1.11812 1.17554 1.20048 1.21647 1.09276 0.97774 0.90631 1.21416 1.02310 0.95090 0.98611 1.21417 1.01468 0.93988 0.98696 1.18369 0.88758 0.93755 0.91393 1.19565 1.41444 0.90412 0.95448 0.89374 1.25981 0.92347 1.01884 0.94323 1.69768 1.31944 1.37210 1.02896 0.86278 0.79975 0.81357 0.79107 1.19213 1.20059 1.18268 1.21196 0.94149 0.94919 0.96557 1.20412 1.06305 1.04144 0.91579 1.17530 0.93622 0.94045 0.85332 1.42350 1.65009 1.29553 1.05962 0.92202 0.93241 0.92751 0.91913 0.92916 0.93259 0.92105 0.86726 0.86392 0.88537 0.85582 0.90618 0.85085 0.87154 0.78031 0.78215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.94 37.16 0.33 -1.51 16 2 C -0.04 -0.54 3.01 -91.77 -0.28 -0.81 16 3 C -0.14 -1.81 9.06 37.16 0.34 -1.47 16 4 C -0.17 -2.79 4.80 -104.47 -0.50 -3.29 16 5 C -0.06 -1.10 8.36 -39.20 -0.33 -1.43 16 6 C -0.03 -0.71 5.24 -104.87 -0.55 -1.25 16 7 C 0.03 0.74 6.42 -82.25 -0.53 0.21 16 8 N -0.46 -11.40 10.16 -9.19 -0.09 -11.50 16 9 C -0.03 -0.77 11.16 -17.36 -0.19 -0.97 16 10 C -0.15 -3.58 10.03 -39.83 -0.40 -3.98 16 11 C -0.13 -3.31 8.72 -38.98 -0.34 -3.65 16 12 C 0.08 2.13 5.55 -106.40 -0.59 1.54 16 13 C -0.44 -11.04 6.76 -37.93 -0.26 -11.30 16 14 H 0.09 2.19 6.48 -52.49 -0.34 1.85 16 15 C 0.07 1.74 5.26 -17.32 -0.09 1.65 16 16 N -0.79 -19.54 10.88 55.55 0.60 -18.93 16 17 Si 0.91 18.04 29.58 -169.99 -5.03 13.01 16 18 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 19 H -0.28 -5.36 7.11 56.52 0.40 -4.95 16 20 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 21 C -0.05 -1.03 7.84 -39.20 -0.31 -1.33 16 22 C -0.20 -3.61 9.88 -39.44 -0.39 -4.00 16 23 C 0.20 3.22 6.74 -83.77 -0.56 2.66 16 24 N -0.89 -10.75 8.94 32.44 0.29 -10.46 16 25 H 0.06 0.83 7.09 -51.93 -0.37 0.47 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.73 5.74 -51.93 -0.30 0.43 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.84 7.72 -51.93 -0.40 0.44 16 32 H 0.11 2.30 7.09 -52.48 -0.37 1.93 16 33 H 0.12 2.40 8.06 -52.48 -0.42 1.97 16 34 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 35 H 0.13 3.25 6.30 -52.49 -0.33 2.92 16 36 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 37 H 0.13 2.93 6.80 -52.48 -0.36 2.57 16 38 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 39 H 0.39 4.05 6.54 -40.82 -0.27 3.78 16 40 H 0.39 3.98 8.85 -40.82 -0.36 3.62 16 LS Contribution 326.28 15.07 4.92 4.92 Total: -1.00 -27.73 326.28 -9.14 -36.87 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -5.19 Total: 15.03 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: -4.65 Total: -28.94 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 0.80 Total: -40.89 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.73 -9.14 -36.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244306750.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.589 kcal (2) G-P(sol) polarization free energy of solvation -27.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds