Wall clock time and date at job start Tue Mar 31 2020 05:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47486 * 2 1 4 4 C 1.50703 * 109.46643 * 120.00236 * 2 1 3 5 5 C 1.37692 * 119.96463 * 295.12742 * 4 2 1 6 6 C 1.39744 * 119.93075 * 180.27761 * 5 4 2 7 7 C 1.47790 * 120.06668 * 179.70445 * 6 5 4 8 8 C 1.39994 * 119.45539 * 179.73320 * 7 6 5 9 9 C 1.36531 * 119.46402 * 179.72269 * 8 7 6 10 10 C 1.41341 * 118.42396 * 0.53451 * 9 8 7 11 11 C 1.41011 * 120.55296 * 179.74572 * 10 9 8 12 12 H 1.08001 * 120.00323 * 155.05386 * 11 10 9 13 13 C 1.39984 * 119.99638 * 335.05518 * 11 10 9 14 14 N 1.30821 * 120.00324 * 345.65251 * 13 11 10 15 15 Si 1.86804 * 119.99646 * 165.64833 * 13 11 10 16 16 H 1.48506 * 109.46759 * 90.00249 * 15 13 11 17 17 H 1.48499 * 109.46729 * 209.99897 * 15 13 11 18 18 H 1.48496 * 109.47096 * 330.00182 * 15 13 11 19 19 C 1.40962 * 118.90410 * 359.73177 * 10 9 8 20 20 N 1.31248 * 120.40820 * 359.97438 * 19 10 9 21 21 C 1.39785 * 119.86424 * 359.41104 * 6 5 4 22 22 C 1.37654 * 119.92997 * 0.63433 * 21 6 5 23 23 C 1.39169 * 119.96852 * 115.15675 * 4 2 1 24 24 N 1.39270 * 119.92947 * 359.97438 * 23 4 2 25 25 H 1.09002 * 109.47323 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47241 * 300.00516 * 1 2 3 27 27 H 1.09005 * 109.46497 * 60.00372 * 1 2 3 28 28 H 1.09002 * 109.47011 * 239.99775 * 2 1 3 29 29 H 1.08991 * 109.47361 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47098 * 300.00281 * 3 2 1 31 31 H 1.09004 * 109.46772 * 59.99556 * 3 2 1 32 32 H 1.08004 * 120.03343 * 0.02562 * 5 4 2 33 33 H 1.08003 * 120.27318 * 359.97438 * 8 7 6 34 34 H 1.08004 * 120.79614 * 180.26449 * 9 8 7 35 35 H 0.96991 * 119.99927 * 180.02562 * 14 13 11 36 36 H 1.08000 * 119.79973 * 179.97438 * 19 10 9 37 37 H 1.07996 * 120.03877 * 180.31732 * 21 6 5 38 38 H 1.08000 * 119.96874 * 179.67550 * 22 21 6 39 39 H 0.96994 * 120.00003 * 7.48922 * 24 23 4 40 40 H 0.96998 * 119.99853 * 187.49301 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 1.7839 -0.1839 2.4782 6 6 2.2549 -0.8402 3.6185 7 6 1.9957 -0.2742 4.9589 8 6 2.4686 -0.9453 6.0928 9 6 2.2341 -0.4196 7.3308 10 6 1.5058 0.7882 7.4219 11 6 1.2333 1.3680 8.6781 12 1 1.0548 2.4303 8.7554 13 6 1.1943 0.5665 9.8252 14 7 1.1287 -0.7351 9.7117 15 14 1.2360 1.3557 11.5178 16 1 -0.1513 1.6351 11.9679 17 1 1.8915 0.4322 12.4784 18 1 2.0008 2.6269 11.4525 19 6 1.0564 1.4040 6.2362 20 7 1.3121 0.8624 5.0683 21 6 2.9665 -2.0364 3.4890 22 6 3.2124 -2.5574 2.2388 23 6 2.7471 -1.8979 1.1045 24 7 2.9968 -2.4280 -0.1589 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.2291 0.7377 2.5754 33 1 3.0181 -1.8693 5.9889 34 1 2.5928 -0.9171 8.2198 35 1 1.1013 -1.2904 10.5065 36 1 0.4982 2.3270 6.2890 37 1 3.3274 -2.5487 4.3686 38 1 3.7667 -3.4788 2.1378 39 1 2.7695 -1.9183 -0.9522 40 1 3.3980 -3.3068 -0.2455 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244307934.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:16 Heat of formation + Delta-G solvation = 31.101436 kcal Electronic energy + Delta-G solvation = -20970.122304 eV Core-core repulsion = 17941.112673 eV Total energy + Delta-G solvation = -3029.009630 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.48327 -38.14543 -35.16870 -34.48752 -33.76359 -30.73989 -30.42467 -29.33750 -27.82293 -26.98511 -25.07734 -23.45885 -22.20902 -21.39973 -20.49682 -19.20419 -17.45236 -17.04595 -16.59603 -15.71249 -15.32159 -14.58071 -14.20707 -14.10356 -13.66296 -13.53713 -13.23106 -13.02134 -13.01322 -12.63796 -12.20662 -12.00740 -11.96150 -11.73311 -11.52414 -11.42759 -11.21938 -11.01571 -10.98478 -10.69401 -10.34299 -10.27177 -10.08875 -9.82630 -9.41966 -8.29128 -8.23620 -8.04808 -7.85837 -6.95643 -6.67296 -4.47692 1.80908 1.99272 2.75115 2.97352 2.99547 3.02948 3.23318 3.78868 4.12435 4.30951 4.72955 4.92295 5.03046 5.37344 5.39482 5.55136 5.63845 5.71935 5.75245 5.79912 5.94540 6.00697 6.05069 6.10603 6.17956 6.34244 6.38711 6.39179 6.57998 6.65025 6.75974 6.80700 6.92148 6.94314 7.09325 7.24381 7.38306 7.44588 7.71646 7.82435 7.91910 7.96700 7.98212 8.38810 8.59384 8.68814 9.62730 9.97164 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.031229 B = 0.003625 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.397298 B = 7721.755123 C = 8370.004748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.041 4.041 3 C -0.145 4.145 4 C -0.156 4.156 5 C -0.057 4.057 6 C -0.036 4.036 7 C 0.011 3.989 8 C -0.130 4.130 9 C -0.139 4.139 10 C 0.065 3.935 11 C -0.439 4.439 12 H 0.084 0.916 13 C 0.071 3.929 14 N -0.785 5.785 15 Si 0.915 3.085 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.259 1.259 19 C -0.017 4.017 20 N -0.454 5.454 21 C -0.088 4.088 22 C -0.192 4.192 23 C 0.190 3.810 24 N -0.886 5.886 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.128 0.872 33 H 0.100 0.900 34 H 0.128 0.872 35 H 0.285 0.715 36 H 0.127 0.873 37 H 0.119 0.881 38 H 0.111 0.889 39 H 0.391 0.609 40 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.380 -2.247 -12.614 13.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.060 4.060 3 C -0.202 4.202 4 C -0.160 4.160 5 C -0.076 4.076 6 C -0.038 4.038 7 C -0.123 4.123 8 C -0.150 4.150 9 C -0.165 4.165 10 C 0.061 3.939 11 C -0.468 4.468 12 H 0.102 0.898 13 C -0.148 4.148 14 N -0.409 5.409 15 Si 0.739 3.261 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.182 1.182 19 C -0.182 4.182 20 N -0.162 5.162 21 C -0.108 4.108 22 C -0.214 4.214 23 C 0.088 3.912 24 N -0.428 5.428 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.145 0.855 33 H 0.118 0.882 34 H 0.146 0.854 35 H 0.096 0.904 36 H 0.145 0.855 37 H 0.137 0.863 38 H 0.129 0.871 39 H 0.221 0.779 40 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 2.056 -2.046 -13.159 13.474 hybrid contribution 0.368 -0.487 1.415 1.541 sum 2.423 -2.533 -11.744 12.256 Atomic orbital electron populations 1.21854 0.94756 1.01679 1.01725 1.19816 0.95588 0.95561 0.95016 1.21876 1.00975 0.95538 1.01796 1.19185 1.04933 0.96857 0.95014 1.20853 0.97574 0.99223 0.89997 1.18469 0.99014 0.94391 0.91942 1.18823 1.07308 0.95329 0.90883 1.21320 1.00907 0.99156 0.93626 1.21376 1.00377 0.98477 0.96235 1.18594 0.89187 0.92350 0.93808 1.19603 1.40215 0.96065 0.90949 0.89758 1.26044 0.92062 0.94617 1.02066 1.69781 1.33363 1.05286 1.32463 0.86190 0.79528 0.80234 0.80172 1.19226 1.19925 1.18228 1.22442 1.05983 1.02143 0.87589 1.66952 1.11017 1.09473 1.28716 1.20937 0.98141 0.95334 0.96355 1.20327 1.07458 1.02118 0.91546 1.17509 0.95207 0.93092 0.85420 1.42367 1.73610 1.22099 1.04754 0.92899 0.91987 0.93098 0.91929 0.92851 0.93088 0.91870 0.85462 0.88203 0.85436 0.90418 0.85527 0.86330 0.87065 0.77893 0.78190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.05 37.16 0.34 -1.39 16 2 C -0.04 -0.51 3.04 -91.77 -0.28 -0.79 16 3 C -0.14 -1.75 8.95 37.16 0.33 -1.41 16 4 C -0.16 -2.44 4.80 -104.47 -0.50 -2.94 16 5 C -0.06 -1.07 8.25 -39.22 -0.32 -1.39 16 6 C -0.04 -0.73 5.88 -104.85 -0.62 -1.35 16 7 C 0.01 0.27 6.74 -82.76 -0.56 -0.29 16 8 C -0.13 -3.08 9.38 -39.54 -0.37 -3.45 16 9 C -0.14 -3.57 8.73 -39.02 -0.34 -3.91 16 10 C 0.07 1.70 5.59 -106.64 -0.60 1.11 16 11 C -0.44 -11.10 9.07 -37.88 -0.34 -11.45 16 12 H 0.08 2.01 7.89 -52.49 -0.41 1.60 16 13 C 0.07 1.70 5.23 -17.33 -0.09 1.61 16 14 N -0.78 -19.36 10.81 55.55 0.60 -18.76 16 15 Si 0.92 17.68 29.58 -169.99 -5.03 12.65 16 16 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 17 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 18 H -0.26 -4.96 7.11 56.52 0.40 -4.55 16 19 C -0.02 -0.44 10.97 -16.77 -0.18 -0.62 16 20 N -0.45 -11.23 9.38 -9.12 -0.09 -11.32 16 21 C -0.09 -1.59 9.40 -39.22 -0.37 -1.96 16 22 C -0.19 -2.98 9.88 -39.43 -0.39 -3.37 16 23 C 0.19 2.80 6.74 -83.77 -0.56 2.24 16 24 N -0.89 -9.53 8.98 32.44 0.29 -9.24 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.83 7.68 -51.93 -0.40 0.43 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.67 5.67 -51.93 -0.29 0.37 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.84 7.13 -51.93 -0.37 0.47 16 32 H 0.13 2.47 6.54 -52.48 -0.34 2.13 16 33 H 0.10 2.09 6.14 -52.48 -0.32 1.77 16 34 H 0.13 3.30 6.15 -52.48 -0.32 2.97 16 35 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 36 H 0.13 2.92 8.06 -52.49 -0.42 2.49 16 37 H 0.12 2.02 6.14 -52.49 -0.32 1.70 16 38 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 39 H 0.39 3.61 6.46 -40.82 -0.26 3.35 16 40 H 0.39 3.40 8.84 -40.82 -0.36 3.04 16 LS Contribution 327.38 15.07 4.93 4.93 Total: -1.00 -27.92 327.38 -9.23 -37.15 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -5.08 Total: 13.95 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: -4.86 Total: -29.37 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.81 Total: -39.32 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.92 -9.23 -37.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244307934.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.247 kcal (2) G-P(sol) polarization free energy of solvation -27.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds