Wall clock time and date at job start Tue Mar 31 2020 05:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47632 * 2 1 4 4 C 1.50697 * 109.47216 * 120.00442 * 2 1 3 5 5 C 1.37813 * 119.97396 * 295.02318 * 4 2 1 6 6 C 1.39479 * 119.95090 * 180.02562 * 5 4 2 7 7 C 1.48190 * 120.05177 * 179.97438 * 6 5 4 8 8 C 1.39981 * 119.61368 * 185.01921 * 7 6 5 9 9 C 1.38655 * 119.45642 * 179.97438 * 8 7 6 10 10 C 1.38319 * 118.70173 * 359.97438 * 9 8 7 11 11 C 1.40676 * 119.19768 * 0.02562 * 10 9 8 12 12 C 1.41360 * 119.76085 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00414 * 359.97438 * 12 11 10 14 14 C 1.40010 * 119.99814 * 180.02562 * 12 11 10 15 15 N 1.30758 * 119.99919 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00029 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47371 * 59.99587 * 16 14 12 18 18 H 1.48504 * 109.47303 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.46865 * 299.99504 * 16 14 12 20 20 N 1.32268 * 119.60889 * 4.74329 * 7 6 5 21 21 C 1.39522 * 119.90076 * 359.97438 * 6 5 4 22 22 C 1.37765 * 119.94892 * 0.02562 * 21 6 5 23 23 C 1.39063 * 119.97981 * 115.04119 * 4 2 1 24 24 N 1.39409 * 119.94846 * 359.97438 * 23 4 2 25 25 H 1.09002 * 109.46587 * 300.00304 * 1 2 3 26 26 H 1.09000 * 109.46718 * 59.99460 * 1 2 3 27 27 H 1.08989 * 109.47653 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47052 * 239.99952 * 2 1 3 29 29 H 1.09000 * 109.47080 * 300.00377 * 3 2 1 30 30 H 1.09002 * 109.46941 * 59.99884 * 3 2 1 31 31 H 1.08996 * 109.47587 * 180.02562 * 3 2 1 32 32 H 1.07997 * 120.02098 * 359.97438 * 5 4 2 33 33 H 1.08002 * 120.26873 * 0.02562 * 8 7 6 34 34 H 1.07998 * 120.64423 * 180.02562 * 9 8 7 35 35 H 1.07994 * 120.39762 * 180.02562 * 10 9 8 36 36 H 0.96998 * 119.99752 * 180.02562 * 15 14 12 37 37 H 1.08001 * 120.02834 * 180.02562 * 21 6 5 38 38 H 1.07999 * 119.97720 * 179.72302 * 22 21 6 39 39 H 0.97002 * 120.00323 * 186.46437 * 24 23 4 40 40 H 0.97003 * 119.99700 * 6.45780 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.7858 -0.1825 2.4792 6 6 2.2514 -0.8402 3.6177 7 6 1.9881 -0.2742 4.9616 8 6 2.5483 -0.8832 6.0906 9 6 2.3002 -0.3505 7.3465 10 6 1.5015 0.7745 7.4450 11 6 0.9670 1.3413 6.2736 12 6 0.1488 2.4907 6.3605 13 1 -0.0644 2.9304 7.3236 14 6 -0.3861 3.0587 5.1979 15 7 -0.1284 2.5261 4.0318 16 14 -1.4668 4.5780 5.3125 17 1 -0.6978 5.6868 5.9324 18 1 -1.9027 4.9793 3.9508 19 1 -2.6586 4.2760 6.1454 20 7 1.2308 0.8039 5.0798 21 6 2.9656 -2.0319 3.4892 22 6 3.2097 -2.5560 2.2388 23 6 2.7447 -1.8982 1.1048 24 7 2.9928 -2.4306 -0.1595 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0275 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.2331 0.7403 2.5763 33 1 3.1694 -1.7603 5.9842 34 1 2.7230 -0.8047 8.2304 35 1 1.2907 1.2123 8.4094 36 1 -0.4987 2.9198 3.2264 37 1 3.3267 -2.5431 4.3694 38 1 3.7663 -3.4761 2.1386 39 1 3.4062 -3.3039 -0.2455 40 1 2.7519 -1.9277 -0.9533 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244318993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:26 Heat of formation + Delta-G solvation = 43.271985 kcal Electronic energy + Delta-G solvation = -21680.609774 eV Core-core repulsion = 18652.127898 eV Total energy + Delta-G solvation = -3028.481876 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.40770 -37.93270 -35.02648 -34.25050 -33.41141 -30.75574 -30.19685 -29.20817 -27.41063 -26.79526 -25.45646 -23.15448 -22.39299 -21.16702 -20.37415 -19.04683 -17.34343 -16.99182 -16.43301 -15.56149 -14.68747 -14.65506 -14.21056 -13.96004 -13.55793 -13.39820 -13.08584 -12.96449 -12.88893 -12.46290 -12.19638 -12.00129 -11.80037 -11.45059 -11.20453 -11.18954 -11.01067 -10.84875 -10.68287 -10.46773 -10.21974 -10.18096 -10.06536 -9.80769 -9.30695 -8.26715 -8.09187 -7.74846 -7.53789 -6.60811 -6.37775 -4.48073 1.84685 2.10145 2.88890 3.09499 3.12087 3.17757 3.27324 3.96803 4.14822 4.46563 4.90936 5.06410 5.17980 5.44775 5.54472 5.66711 5.70981 5.87664 5.93948 6.01179 6.09051 6.13547 6.20609 6.23136 6.28649 6.41993 6.55022 6.58347 6.58916 6.72075 6.80072 6.86194 6.91977 7.07767 7.18956 7.43108 7.44614 7.56519 7.67965 7.80579 7.90605 8.01588 8.11063 8.27084 8.71153 8.97044 10.12881 10.34289 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014573 B = 0.006503 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.892293 B = 4304.712931 C = 6035.747995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.038 4.038 3 C -0.146 4.146 4 C -0.168 4.168 5 C -0.026 4.026 6 C -0.075 4.075 7 C 0.187 3.813 8 C -0.306 4.306 9 C -0.059 4.059 10 C -0.279 4.279 11 C 0.259 3.741 12 C -0.434 4.434 13 H 0.081 0.919 14 C 0.073 3.927 15 N -0.717 5.717 16 Si 0.905 3.095 17 H -0.266 1.266 18 H -0.278 1.278 19 H -0.266 1.266 20 N -0.471 5.471 21 C -0.067 4.067 22 C -0.208 4.208 23 C 0.207 3.793 24 N -0.885 5.885 25 H 0.067 0.933 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.155 0.845 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.271 0.729 37 H 0.120 0.880 38 H 0.111 0.889 39 H 0.391 0.609 40 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.031 -5.218 -9.199 11.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.057 4.057 3 C -0.203 4.203 4 C -0.172 4.172 5 C -0.045 4.045 6 C -0.078 4.078 7 C 0.043 3.957 8 C -0.329 4.329 9 C -0.083 4.083 10 C -0.302 4.302 11 C 0.133 3.867 12 C -0.465 4.465 13 H 0.100 0.900 14 C -0.152 4.152 15 N -0.339 5.339 16 Si 0.729 3.271 17 H -0.191 1.191 18 H -0.203 1.203 19 H -0.191 1.191 20 N -0.184 5.184 21 C -0.087 4.087 22 C -0.230 4.230 23 C 0.104 3.896 24 N -0.427 5.427 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.172 0.828 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.082 0.918 37 H 0.137 0.863 38 H 0.129 0.871 39 H 0.218 0.782 40 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 2.592 -4.725 -10.096 11.445 hybrid contribution 0.061 -0.043 0.622 0.626 sum 2.653 -4.768 -9.474 10.933 Atomic orbital electron populations 1.21864 0.94673 1.01497 1.02085 1.19781 0.95682 0.95581 0.94627 1.21889 1.00706 0.95556 1.02168 1.19287 1.05626 0.96896 0.95398 1.21375 0.94304 0.99432 0.89432 1.18608 1.01338 0.95384 0.92440 1.19757 0.93112 0.92249 0.90576 1.21217 1.12541 1.05681 0.93452 1.20767 0.96427 0.95301 0.95834 1.21756 1.08289 1.01396 0.98710 1.18506 0.90047 0.91823 0.86290 1.19522 1.24779 1.08157 0.94051 0.90040 1.25995 0.96074 0.98026 0.95110 1.70082 1.31461 1.34096 0.98264 0.86433 0.80625 0.81711 0.78284 1.19058 1.20259 1.19058 1.68761 1.15271 1.08872 1.25475 1.20976 0.96494 0.94872 0.96326 1.20295 1.08688 1.02513 0.91546 1.17600 0.93981 0.92637 0.85363 1.42461 1.72402 1.22935 1.04863 0.91361 0.93255 0.93155 0.92234 0.93243 0.91231 0.93092 0.82787 0.88614 0.88718 0.88493 0.91795 0.86256 0.87054 0.78187 0.77750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.05 37.16 0.34 -1.71 16 2 C -0.04 -0.54 3.04 -91.78 -0.28 -0.82 16 3 C -0.15 -2.09 8.95 37.16 0.33 -1.75 16 4 C -0.17 -2.87 4.80 -104.47 -0.50 -3.37 16 5 C -0.03 -0.55 8.26 -39.27 -0.32 -0.87 16 6 C -0.08 -1.64 5.88 -104.87 -0.62 -2.26 16 7 C 0.19 4.67 6.73 -82.94 -0.56 4.11 16 8 C -0.31 -7.10 9.47 -38.77 -0.37 -7.47 16 9 C -0.06 -1.36 10.15 -39.40 -0.40 -1.76 16 10 C -0.28 -6.98 9.83 -38.63 -0.38 -7.36 16 11 C 0.26 7.13 6.55 -85.01 -0.56 6.57 16 12 C -0.43 -11.56 9.14 -37.73 -0.34 -11.90 16 13 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 14 C 0.07 1.82 5.50 -17.34 -0.10 1.73 16 15 N -0.72 -18.29 11.14 55.55 0.62 -17.67 16 16 Si 0.91 18.46 29.56 -169.99 -5.02 13.44 16 17 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 18 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 19 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 20 N -0.47 -12.87 6.92 -7.69 -0.05 -12.92 16 21 C -0.07 -1.24 9.40 -39.28 -0.37 -1.61 16 22 C -0.21 -3.32 9.88 -39.43 -0.39 -3.71 16 23 C 0.21 3.22 6.74 -83.79 -0.56 2.66 16 24 N -0.88 -10.08 8.99 32.43 0.29 -9.78 16 25 H 0.07 1.12 7.69 -51.93 -0.40 0.72 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.70 8.14 -51.94 -0.42 0.28 16 28 H 0.06 0.72 5.66 -51.93 -0.29 0.42 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.15 7.12 -51.93 -0.37 0.78 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.15 3.54 6.25 -52.49 -0.33 3.21 16 33 H 0.10 1.95 6.20 -52.49 -0.33 1.62 16 34 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 35 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 36 H 0.27 6.28 8.29 -40.82 -0.34 5.94 16 37 H 0.12 2.04 6.19 -52.49 -0.32 1.71 16 38 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 39 H 0.39 3.56 8.84 -40.82 -0.36 3.20 16 40 H 0.39 3.93 6.46 -40.82 -0.26 3.67 16 LS Contribution 328.56 15.07 4.95 4.95 Total: -1.00 -29.01 328.56 -9.46 -38.47 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -5.17 Total: 13.05 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: -5.08 Total: -29.52 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 0.86 Total: -40.38 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.02 Total: 13.44 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.01 -9.46 -38.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244318993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.742 kcal (2) G-P(sol) polarization free energy of solvation -29.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds