Wall clock time and date at job start Tue Mar 31 2020 05:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47578 * 2 1 4 4 C 1.50709 * 109.47160 * 120.00034 * 2 1 3 5 5 C 1.37877 * 119.97346 * 304.89511 * 4 2 1 6 6 C 1.39375 * 119.95174 * 179.97438 * 5 4 2 7 7 C 1.48361 * 120.04374 * 180.02562 * 6 5 4 8 8 C 1.39731 * 120.41408 * 359.72710 * 7 6 5 9 9 N 1.31919 * 121.14748 * 179.76979 * 8 7 6 10 10 C 1.31527 * 122.11838 * 0.49036 * 9 8 7 11 11 C 1.40774 * 120.67198 * 359.77864 * 10 9 8 12 12 C 1.41436 * 120.60481 * 179.97438 * 11 10 9 13 13 H 1.08004 * 120.00055 * 335.22897 * 12 11 10 14 14 C 1.39932 * 120.00341 * 155.22462 * 12 11 10 15 15 N 1.30824 * 120.00133 * 345.86630 * 14 12 11 16 16 Si 1.86797 * 119.99995 * 165.86117 * 14 12 11 17 17 H 1.48492 * 109.47402 * 90.00438 * 16 14 12 18 18 H 1.48503 * 109.47405 * 210.00253 * 16 14 12 19 19 H 1.48500 * 109.47094 * 330.00191 * 16 14 12 20 20 C 1.39169 * 120.41022 * 179.97438 * 7 6 5 21 21 C 1.39423 * 119.90921 * 359.74708 * 6 5 4 22 22 C 1.37830 * 119.95366 * 0.50682 * 21 6 5 23 23 C 1.38991 * 119.97721 * 124.86526 * 4 2 1 24 24 N 1.39562 * 119.95699 * 0.05379 * 23 4 2 25 25 H 1.08997 * 109.47110 * 60.00110 * 1 2 3 26 26 H 1.09001 * 109.47319 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46956 * 299.99845 * 1 2 3 28 28 H 1.09001 * 109.47421 * 239.99540 * 2 1 3 29 29 H 1.08993 * 109.47429 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46988 * 300.00537 * 3 2 1 31 31 H 1.09008 * 109.46983 * 59.99712 * 3 2 1 32 32 H 1.07996 * 120.02769 * 359.97438 * 5 4 2 33 33 H 1.07995 * 119.42858 * 359.97438 * 8 7 6 34 34 H 1.08001 * 119.66071 * 179.75048 * 10 9 8 35 35 H 0.97001 * 120.00550 * 179.97438 * 15 14 12 36 36 H 1.07991 * 120.95312 * 0.02562 * 20 7 6 37 37 H 1.07995 * 120.01971 * 180.25037 * 21 6 5 38 38 H 1.08003 * 119.97805 * 179.77102 * 22 21 6 39 39 H 0.97007 * 120.00463 * 172.57958 * 24 23 4 40 40 H 0.97001 * 119.99820 * 352.56816 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 1.6178 -0.3007 2.4800 6 6 2.0822 -0.9584 3.6177 7 6 1.6370 -0.5195 4.9631 8 6 0.7561 0.5564 5.1007 9 7 0.3474 0.9559 6.2897 10 6 0.7501 0.3753 7.3991 11 6 1.6419 -0.7130 7.3572 12 6 2.0744 -1.3360 8.5510 13 1 2.0712 -0.7845 9.4797 14 6 2.5065 -2.6667 8.5292 15 7 2.2578 -3.4182 7.4876 16 14 3.4386 -3.3702 9.9871 17 1 2.4761 -3.9589 10.9526 18 1 4.3734 -4.4233 9.5157 19 1 4.2073 -2.2876 10.6522 20 6 2.0956 -1.1711 6.1042 21 6 2.9612 -2.0330 3.4893 22 6 3.3773 -2.4361 2.2386 23 6 2.9127 -1.7786 1.1049 24 7 3.3315 -2.1915 -0.1607 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.9337 0.5293 2.5772 33 1 0.4012 1.0678 4.2182 34 1 0.3932 0.7376 8.3518 35 1 2.5576 -4.3406 7.4722 36 1 2.7803 -2.0030 6.0314 37 1 3.3191 -2.5464 4.3694 38 1 4.0611 -3.2661 2.1389 39 1 4.0260 -2.8633 -0.2467 40 1 2.9280 -1.8067 -0.9545 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244331560.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:36 Heat of formation + Delta-G solvation = 30.987730 kcal Electronic energy + Delta-G solvation = -21276.311220 eV Core-core repulsion = 18247.296659 eV Total energy + Delta-G solvation = -3029.014561 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.61977 -38.12015 -35.23310 -34.44156 -34.00408 -30.86548 -30.36647 -29.41838 -27.07556 -26.91899 -25.64065 -23.48722 -22.38149 -21.52771 -20.44767 -19.10399 -17.51322 -16.87297 -16.74330 -15.55990 -15.22340 -14.87957 -14.41883 -14.22614 -13.71708 -13.61260 -13.27880 -13.09149 -12.92729 -12.60997 -12.24309 -12.13126 -12.06417 -11.69282 -11.40218 -11.31504 -11.20011 -11.09809 -10.98457 -10.61512 -10.55913 -10.42169 -10.19648 -9.75473 -9.37915 -8.37633 -8.27567 -8.05050 -7.72308 -6.85315 -6.59346 -4.49059 1.71501 1.88815 2.74224 3.02490 3.06460 3.09971 3.20936 3.86233 4.04335 4.34382 4.69852 4.83369 4.93516 5.28813 5.34399 5.49269 5.63160 5.66854 5.71808 5.78039 5.79198 5.90788 5.98154 6.04455 6.09408 6.23400 6.30315 6.31145 6.48533 6.55876 6.67772 6.82775 6.88718 6.93048 7.08428 7.23473 7.30480 7.37649 7.75591 7.76843 7.88838 7.91413 7.98294 8.44641 8.69504 8.73125 9.65002 10.08821 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.021516 B = 0.004592 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.021099 B = 6096.325657 C = 7150.234117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.042 4.042 3 C -0.143 4.143 4 C -0.157 4.157 5 C -0.066 4.066 6 C -0.063 4.063 7 C -0.080 4.080 8 C -0.027 4.027 9 N -0.471 5.471 10 C -0.021 4.021 11 C 0.062 3.938 12 C -0.451 4.451 13 H 0.082 0.918 14 C 0.074 3.926 15 N -0.795 5.795 16 Si 0.912 3.088 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.260 1.260 20 C -0.121 4.121 21 C -0.067 4.067 22 C -0.193 4.193 23 C 0.201 3.799 24 N -0.885 5.885 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.125 0.875 35 H 0.282 0.718 36 H 0.135 0.865 37 H 0.128 0.872 38 H 0.114 0.886 39 H 0.392 0.608 40 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.776 0.315 -13.498 13.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.061 4.061 3 C -0.200 4.200 4 C -0.161 4.161 5 C -0.085 4.085 6 C -0.066 4.066 7 C -0.083 4.083 8 C -0.185 4.185 9 N -0.178 5.178 10 C -0.182 4.182 11 C 0.058 3.942 12 C -0.481 4.481 13 H 0.100 0.900 14 C -0.144 4.144 15 N -0.420 5.420 16 Si 0.736 3.264 17 H -0.194 1.194 18 H -0.200 1.200 19 H -0.184 1.184 20 C -0.147 4.147 21 C -0.085 4.085 22 C -0.216 4.216 23 C 0.098 3.902 24 N -0.428 5.428 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.143 0.857 35 H 0.093 0.907 36 H 0.152 0.848 37 H 0.145 0.855 38 H 0.132 0.868 39 H 0.220 0.780 40 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 2.204 0.786 -13.488 13.689 hybrid contribution 1.121 -1.447 0.281 1.851 sum 3.325 -0.661 -13.207 13.635 Atomic orbital electron populations 1.21881 0.94709 1.01890 1.01749 1.19828 0.95616 0.95572 0.95048 1.21856 1.01035 0.95429 1.01700 1.19115 1.03435 0.98689 0.94856 1.20803 0.98325 0.98763 0.90574 1.18721 0.98664 0.96657 0.92548 1.19436 0.99593 0.97461 0.91784 1.21762 1.03451 0.99161 0.94116 1.66927 1.23078 1.29066 0.98775 1.22523 1.00963 0.99880 0.94799 1.18471 0.90040 0.91941 0.93752 1.19544 1.37135 0.96127 0.95286 0.89988 1.25941 0.93954 0.97059 0.97432 1.69774 1.34983 1.07870 1.29411 0.86247 0.79852 0.79123 0.81193 1.19374 1.20040 1.18372 1.21876 1.01220 1.00937 0.90678 1.21126 0.95338 0.95352 0.96705 1.20443 1.06430 1.03134 0.91563 1.17526 0.94204 0.92978 0.85477 1.42470 1.46358 1.49247 1.04686 0.92960 0.92701 0.92058 0.91761 0.92796 0.92983 0.92137 0.86093 0.86298 0.85743 0.90668 0.84800 0.85461 0.86822 0.78015 0.77810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.95 37.16 0.33 -1.29 16 2 C -0.04 -0.49 3.04 -91.77 -0.28 -0.77 16 3 C -0.14 -1.57 9.05 37.16 0.34 -1.23 16 4 C -0.16 -2.33 4.80 -104.47 -0.50 -2.83 16 5 C -0.07 -1.15 8.12 -39.29 -0.32 -1.47 16 6 C -0.06 -1.28 5.88 -104.87 -0.62 -1.90 16 7 C -0.08 -1.90 5.88 -104.83 -0.62 -2.51 16 8 C -0.03 -0.64 10.60 -16.96 -0.18 -0.82 16 9 N -0.47 -11.88 10.32 -12.28 -0.13 -12.00 16 10 C -0.02 -0.53 10.96 -16.72 -0.18 -0.71 16 11 C 0.06 1.65 5.59 -106.71 -0.60 1.05 16 12 C -0.45 -11.62 9.09 -37.73 -0.34 -11.97 16 13 H 0.08 2.01 7.88 -52.48 -0.41 1.59 16 14 C 0.07 1.79 5.24 -17.35 -0.09 1.70 16 15 N -0.80 -19.82 10.80 55.55 0.60 -19.22 16 16 Si 0.91 18.09 29.58 -169.99 -5.03 13.06 16 17 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 18 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 19 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 20 C -0.12 -3.11 8.15 -38.23 -0.31 -3.42 16 21 C -0.07 -1.26 9.43 -39.29 -0.37 -1.64 16 22 C -0.19 -3.09 9.88 -39.43 -0.39 -3.48 16 23 C 0.20 2.91 6.74 -83.76 -0.56 2.35 16 24 N -0.89 -9.34 8.99 32.43 0.29 -9.05 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.73 7.13 -51.93 -0.37 0.36 16 28 H 0.06 0.64 5.67 -51.93 -0.29 0.35 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.71 7.68 -51.92 -0.40 0.31 16 32 H 0.12 2.01 5.24 -52.49 -0.28 1.73 16 33 H 0.12 2.47 6.19 -52.49 -0.33 2.15 16 34 H 0.13 2.94 8.06 -52.49 -0.42 2.52 16 35 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 36 H 0.13 3.43 4.39 -52.49 -0.23 3.20 16 37 H 0.13 2.52 6.25 -52.49 -0.33 2.20 16 38 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 39 H 0.39 3.40 8.85 -40.82 -0.36 3.04 16 40 H 0.39 3.48 6.47 -40.82 -0.26 3.22 16 LS Contribution 325.15 15.07 4.90 4.90 Total: -1.00 -28.41 325.15 -8.99 -37.40 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -4.93 Total: 13.84 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: -4.69 Total: -28.93 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.76 Total: -40.27 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.41 -8.99 -37.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244331560.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.384 kcal (2) G-P(sol) polarization free energy of solvation -28.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds