Wall clock time and date at job start Tue Mar 31 2020 05:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47349 * 2 1 4 4 C 1.50700 * 109.46997 * 120.00568 * 2 1 3 5 5 C 1.37688 * 119.96481 * 304.99938 * 4 2 1 6 6 C 1.39762 * 119.93001 * 179.97438 * 5 4 2 7 7 C 1.47799 * 120.06904 * 180.02562 * 6 5 4 8 8 C 1.40359 * 120.35534 * 180.02562 * 7 6 5 9 9 C 1.36601 * 118.60688 * 180.02562 * 8 7 6 10 10 C 1.40922 * 119.26335 * 359.97438 * 9 8 7 11 11 C 1.40911 * 119.67176 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00161 * 359.97438 * 11 10 9 13 13 C 1.40058 * 119.99624 * 180.02562 * 11 10 9 14 14 N 1.30739 * 120.00044 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99793 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47037 * 59.99753 * 15 13 11 17 17 H 1.48492 * 109.47217 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46884 * 299.99891 * 15 13 11 19 19 N 1.33812 * 120.65432 * 0.02562 * 10 9 8 20 20 C 1.31172 * 121.50222 * 359.69884 * 19 10 9 21 21 C 1.39803 * 119.86088 * 359.71130 * 6 5 4 22 22 C 1.37643 * 119.93335 * 0.56320 * 21 6 5 23 23 C 1.39180 * 119.96648 * 124.98601 * 4 2 1 24 24 N 1.39284 * 119.93430 * 0.02562 * 23 4 2 25 25 H 1.08998 * 109.47303 * 299.99586 * 1 2 3 26 26 H 1.09010 * 109.47322 * 59.99794 * 1 2 3 27 27 H 1.09005 * 109.47380 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47153 * 240.00736 * 2 1 3 29 29 H 1.08994 * 109.47289 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47190 * 300.00613 * 3 2 1 31 31 H 1.09006 * 109.46392 * 60.00270 * 3 2 1 32 32 H 1.07997 * 120.03355 * 359.95999 * 5 4 2 33 33 H 1.08003 * 120.69973 * 359.97413 * 8 7 6 34 34 H 1.08000 * 120.36642 * 179.97438 * 9 8 7 35 35 H 0.97008 * 119.99431 * 179.97438 * 14 13 11 36 36 H 1.08000 * 119.65465 * 180.31167 * 20 19 10 37 37 H 1.07998 * 120.03028 * 180.32180 * 21 6 5 38 38 H 1.07992 * 119.97180 * 179.73241 * 22 21 6 39 39 H 0.96996 * 120.00879 * 173.57082 * 24 23 4 40 40 H 0.97004 * 119.99835 * 353.57414 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6164 -0.3027 2.4780 6 6 2.0823 -0.9625 3.6186 7 6 1.6375 -0.5276 4.9593 8 6 2.1020 -1.1856 6.1088 9 6 1.6674 -0.7543 7.3299 10 6 0.7718 0.3316 7.3982 11 6 0.3184 0.7839 8.6534 12 1 0.6568 0.2985 9.5568 13 6 -0.5721 1.8623 8.7292 14 7 -0.9822 2.4495 7.6354 15 14 -1.1727 2.4624 10.3931 16 1 -0.0120 2.8973 11.2109 17 1 -2.0993 3.6068 10.2016 18 1 -1.8838 1.3603 11.0896 19 7 0.3479 0.9375 6.2830 20 6 0.7514 0.5499 5.0966 21 6 2.9648 -2.0389 3.4883 22 6 3.3812 -2.4383 2.2387 23 6 2.9158 -1.7785 1.1044 24 7 3.3348 -2.1886 -0.1590 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9562 0.8901 32 1 0.9312 0.5264 2.5751 33 1 2.7880 -2.0160 6.0295 34 1 2.0063 -1.2402 8.2329 35 1 -1.5993 3.1962 7.6880 36 1 0.3940 1.0636 4.2164 37 1 3.3225 -2.5541 4.3676 38 1 4.0663 -3.2670 2.1376 39 1 4.0202 -2.8695 -0.2455 40 1 2.9412 -1.7933 -0.9525 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244331836.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:42 Heat of formation + Delta-G solvation = 40.811814 kcal Electronic energy + Delta-G solvation = -21039.429883 eV Core-core repulsion = 18010.841326 eV Total energy + Delta-G solvation = -3028.588557 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.49638 -38.04015 -35.20642 -34.44008 -33.45102 -30.79675 -30.49085 -29.31224 -27.66361 -27.01135 -25.06785 -23.59304 -22.08083 -21.54507 -20.38362 -19.13799 -17.62439 -16.94098 -16.69770 -15.54286 -15.24671 -14.46903 -14.26413 -14.15162 -13.73584 -13.53544 -13.21444 -12.96085 -12.76919 -12.52341 -12.20617 -12.14824 -12.00626 -11.96815 -11.28774 -11.27248 -11.04709 -11.03884 -10.89973 -10.60626 -10.36103 -10.32640 -10.14333 -9.88998 -9.37114 -8.33699 -8.27471 -7.89041 -7.59165 -6.63832 -6.49016 -4.51167 1.84164 1.95074 2.85073 3.03496 3.05469 3.09132 3.25507 3.86944 4.13455 4.39840 4.81083 4.89979 5.00264 5.35175 5.39509 5.54068 5.72503 5.73564 5.82544 5.85619 5.91396 5.97687 6.01679 6.09486 6.11844 6.19103 6.35044 6.36331 6.43373 6.57672 6.66605 6.78184 6.88092 6.99348 7.05208 7.19411 7.35332 7.39459 7.63823 7.82005 7.91862 7.99015 7.99326 8.15241 8.55932 8.85406 10.05180 10.21267 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.026182 B = 0.003878 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.168251 B = 7218.184492 C = 8102.531099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.043 4.043 3 C -0.143 4.143 4 C -0.143 4.143 5 C -0.091 4.091 6 C -0.020 4.020 7 C -0.262 4.262 8 C -0.042 4.042 9 C -0.272 4.272 10 C 0.251 3.749 11 C -0.415 4.415 12 H 0.085 0.915 13 C 0.065 3.935 14 N -0.704 5.704 15 Si 0.910 3.090 16 H -0.264 1.264 17 H -0.276 1.276 18 H -0.263 1.263 19 N -0.487 5.487 20 C 0.148 3.852 21 C -0.103 4.103 22 C -0.184 4.184 23 C 0.178 3.822 24 N -0.887 5.887 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.118 0.882 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.276 0.724 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.109 0.891 39 H 0.390 0.610 40 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.135 -3.994 -12.135 13.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.062 4.062 3 C -0.200 4.200 4 C -0.147 4.147 5 C -0.110 4.110 6 C -0.023 4.023 7 C -0.267 4.267 8 C -0.065 4.065 9 C -0.295 4.295 10 C 0.128 3.872 11 C -0.446 4.446 12 H 0.103 0.897 13 C -0.162 4.162 14 N -0.324 5.324 15 Si 0.734 3.266 16 H -0.188 1.188 17 H -0.201 1.201 18 H -0.188 1.188 19 N -0.199 5.199 20 C -0.020 4.020 21 C -0.122 4.122 22 C -0.206 4.206 23 C 0.076 3.924 24 N -0.430 5.430 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.136 0.864 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.087 0.913 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.217 0.783 40 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 3.370 -3.079 -11.993 12.833 hybrid contribution 0.544 -0.690 0.307 0.930 sum 3.914 -3.769 -11.686 12.888 Atomic orbital electron populations 1.21877 0.94721 1.01800 1.01787 1.19839 0.95612 0.95571 0.95140 1.21853 1.00968 0.95457 1.01735 1.19108 1.02561 0.98214 0.94816 1.20767 0.99894 0.99720 0.90621 1.18650 0.96245 0.94850 0.92539 1.19034 1.11023 1.05583 0.91053 1.20640 0.96599 0.96793 0.92465 1.21407 1.07611 1.04071 0.96372 1.18638 0.88232 0.87944 0.92386 1.19667 1.20746 1.11381 0.92760 0.89657 1.26151 0.95662 0.96156 0.98190 1.70133 1.19587 1.14111 1.28610 0.86341 0.79370 0.78951 0.81958 1.18803 1.20067 1.18799 1.68790 1.25364 1.29213 0.96518 1.22744 0.91610 0.91651 0.95988 1.20897 0.98032 0.97159 0.96081 1.20351 1.05816 1.02729 0.91728 1.17449 0.95554 0.93958 0.85409 1.42339 1.47610 1.48341 1.04723 0.91977 0.93028 0.92783 0.91871 0.92859 0.93034 0.92066 0.86371 0.88491 0.88332 0.91296 0.86263 0.86724 0.87318 0.78276 0.77961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.95 37.16 0.33 -1.37 16 2 C -0.04 -0.52 3.04 -91.77 -0.28 -0.80 16 3 C -0.14 -1.67 9.05 37.16 0.34 -1.34 16 4 C -0.14 -2.17 4.80 -104.47 -0.50 -2.67 16 5 C -0.09 -1.61 8.12 -39.21 -0.32 -1.93 16 6 C -0.02 -0.40 5.88 -104.83 -0.62 -1.01 16 7 C -0.26 -5.94 5.92 -104.46 -0.62 -6.56 16 8 C -0.04 -0.94 9.46 -39.38 -0.37 -1.31 16 9 C -0.27 -6.66 9.76 -39.16 -0.38 -7.05 16 10 C 0.25 6.84 6.55 -84.98 -0.56 6.28 16 11 C -0.42 -10.93 9.11 -37.89 -0.35 -11.28 16 12 H 0.09 2.08 7.85 -52.49 -0.41 1.66 16 13 C 0.07 1.62 5.50 -17.33 -0.10 1.53 16 14 N -0.70 -18.41 11.44 55.55 0.64 -17.77 16 15 Si 0.91 18.11 29.56 -169.99 -5.02 13.09 16 16 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 17 H -0.28 -5.35 7.11 56.52 0.40 -4.94 16 18 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 19 N -0.49 -13.38 7.83 -10.83 -0.08 -13.47 16 20 C 0.15 3.62 10.60 -17.10 -0.18 3.44 16 21 C -0.10 -1.81 9.43 -39.21 -0.37 -2.18 16 22 C -0.18 -2.82 9.88 -39.43 -0.39 -3.21 16 23 C 0.18 2.59 6.74 -83.76 -0.56 2.02 16 24 N -0.89 -9.50 8.98 32.45 0.29 -9.21 16 25 H 0.06 0.79 7.12 -51.93 -0.37 0.42 16 26 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.66 5.66 -51.93 -0.29 0.37 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.78 7.69 -51.93 -0.40 0.38 16 32 H 0.12 2.05 5.24 -52.49 -0.27 1.78 16 33 H 0.10 1.90 6.29 -52.48 -0.33 1.57 16 34 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 35 H 0.28 6.51 8.29 -40.82 -0.34 6.17 16 36 H 0.12 2.63 6.20 -52.49 -0.33 2.31 16 37 H 0.11 1.91 6.24 -52.49 -0.33 1.58 16 38 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 39 H 0.39 3.40 8.84 -40.82 -0.36 3.04 16 40 H 0.39 3.60 6.45 -40.82 -0.26 3.33 16 LS Contribution 326.48 15.07 4.92 4.92 Total: -1.00 -29.14 326.48 -9.21 -38.35 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -5.03 Total: 11.53 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: -4.92 Total: -27.43 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.84 Total: -40.45 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.02 Total: 13.09 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.14 -9.21 -38.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244331836.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.159 kcal (2) G-P(sol) polarization free energy of solvation -29.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds