Wall clock time and date at job start Tue Mar 31 2020 05:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47255 * 2 1 4 4 C 1.50701 * 109.47090 * 119.99657 * 2 1 3 5 5 C 1.37845 * 119.97813 * 304.81821 * 4 2 1 6 6 C 1.39421 * 119.95441 * 180.20552 * 5 4 2 7 7 C 1.48299 * 120.04646 * 179.79203 * 6 5 4 8 8 C 1.40077 * 120.82613 * 359.74516 * 7 6 5 9 9 C 1.38462 * 119.42144 * 179.97438 * 8 7 6 10 10 N 1.31506 * 121.15096 * 359.71306 * 9 8 7 11 11 C 1.33657 * 121.79956 * 0.58148 * 10 9 8 12 12 C 1.41434 * 119.77595 * 179.70721 * 11 10 9 13 13 H 1.07997 * 119.99688 * 186.31466 * 12 11 10 14 14 C 1.40033 * 119.99903 * 6.30848 * 12 11 10 15 15 N 1.30738 * 119.99711 * 183.00683 * 14 12 11 16 16 Si 1.86796 * 120.00043 * 3.00635 * 14 12 11 17 17 H 1.48501 * 109.46891 * 179.97438 * 16 14 12 18 18 H 1.48496 * 109.47174 * 299.99965 * 16 14 12 19 19 H 1.48500 * 109.47142 * 60.00070 * 16 14 12 20 20 C 1.39365 * 120.82401 * 179.72685 * 7 6 5 21 21 C 1.39458 * 119.90527 * 359.51408 * 6 5 4 22 22 C 1.37806 * 119.95227 * 0.25174 * 21 6 5 23 23 C 1.39034 * 119.97625 * 124.53454 * 4 2 1 24 24 N 1.39480 * 119.95338 * 0.05236 * 23 4 2 25 25 H 1.08996 * 109.47277 * 300.00164 * 1 2 3 26 26 H 1.09000 * 109.46879 * 60.00311 * 1 2 3 27 27 H 1.09001 * 109.47131 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47565 * 239.99508 * 2 1 3 29 29 H 1.09004 * 109.47144 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47410 * 299.99460 * 3 2 1 31 31 H 1.09004 * 109.46953 * 60.00027 * 3 2 1 32 32 H 1.08002 * 120.02436 * 359.97438 * 5 4 2 33 33 H 1.08002 * 120.29086 * 0.02562 * 8 7 6 34 34 H 1.08001 * 119.42357 * 179.97438 * 9 8 7 35 35 H 0.96998 * 119.99979 * 354.87884 * 15 14 12 36 36 H 1.08007 * 120.58572 * 0.03985 * 20 7 6 37 37 H 1.07996 * 120.02524 * 180.23289 * 21 6 5 38 38 H 1.08002 * 119.97101 * 179.97438 * 22 21 6 39 39 H 0.97002 * 119.99898 * 173.03732 * 24 23 4 40 40 H 0.96998 * 119.99761 * 353.03439 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.6191 -0.2996 2.4798 6 6 2.0875 -0.9544 3.6181 7 6 1.6479 -0.5113 4.9633 8 6 0.7662 0.5670 5.1113 9 6 0.3743 0.9559 6.3812 10 7 0.8111 0.3270 7.4503 11 6 1.6576 -0.7038 7.3645 12 6 2.1050 -1.3453 8.5429 13 1 2.8655 -2.1099 8.4859 14 6 1.5619 -0.9888 9.7834 15 7 2.0167 -1.5394 10.8785 16 14 0.1878 0.2733 9.8735 17 1 -0.2091 0.4726 11.2905 18 1 0.6606 1.5613 9.3055 19 1 -0.9811 -0.2112 9.0960 20 6 2.1014 -1.1577 6.1117 21 6 2.9654 -2.0303 3.4895 22 6 3.3722 -2.4408 2.2385 23 6 2.9075 -1.7832 1.1046 24 7 3.3206 -2.2003 -0.1607 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 0.9359 0.5312 2.5770 33 1 0.3946 1.0900 4.2426 34 1 -0.3052 1.7875 6.4953 35 1 2.6773 -2.2478 10.8271 36 1 2.7823 -1.9930 6.0395 37 1 3.3264 -2.5413 4.3698 38 1 4.0524 -3.2737 2.1386 39 1 4.0069 -2.8803 -0.2471 40 1 2.9215 -1.8103 -0.9541 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244335326.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:51 Heat of formation + Delta-G solvation = 24.725990 kcal Electronic energy + Delta-G solvation = -21123.811056 eV Core-core repulsion = 18094.524965 eV Total energy + Delta-G solvation = -3029.286091 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.85245 -38.43403 -35.49809 -34.72110 -33.66591 -31.42685 -30.51866 -29.61699 -27.47811 -27.21479 -25.57120 -23.56673 -22.82778 -21.52924 -20.38844 -19.58081 -18.07707 -17.34051 -16.95743 -15.76852 -15.03404 -14.95380 -14.44977 -14.13592 -13.81994 -13.81066 -13.47384 -13.43971 -12.92379 -12.80610 -12.52681 -12.28980 -12.25357 -12.20117 -11.82826 -11.44290 -11.25156 -10.96303 -10.86722 -10.68760 -10.39994 -10.22788 -9.98093 -9.56033 -9.26047 -8.72370 -8.53172 -7.94981 -7.65484 -7.19813 -7.00284 -4.76037 1.45036 1.65138 2.59461 2.85215 3.66102 3.71466 3.84478 4.07290 4.17593 4.49942 4.65652 4.72938 4.76128 5.11889 5.13509 5.30158 5.35467 5.53309 5.54733 5.57958 5.60596 5.74862 5.76197 5.78389 5.87130 5.98564 6.13007 6.15816 6.18554 6.33558 6.40997 6.49551 6.58844 6.67922 6.90989 7.03068 7.07549 7.27829 7.45164 7.50074 7.57340 7.71628 7.74840 8.09930 8.32564 8.66584 9.51407 10.03690 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.027992 B = 0.004114 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.036637 B = 6803.962684 C = 7610.441430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.043 4.043 3 C -0.143 4.143 4 C -0.158 4.158 5 C -0.055 4.055 6 C -0.082 4.082 7 C 0.028 3.972 8 C -0.307 4.307 9 C 0.151 3.849 10 N -0.577 5.577 11 C 0.252 3.748 12 C -0.475 4.475 13 H 0.080 0.920 14 C 0.044 3.956 15 N -0.806 5.806 16 Si 1.157 2.843 17 H -0.334 1.334 18 H -0.279 1.279 19 H -0.294 1.294 20 C -0.250 4.250 21 C -0.064 4.064 22 C -0.196 4.196 23 C 0.209 3.791 24 N -0.882 5.882 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.124 0.876 33 H 0.104 0.896 34 H 0.127 0.873 35 H 0.282 0.718 36 H 0.106 0.894 37 H 0.125 0.875 38 H 0.117 0.883 39 H 0.394 0.606 40 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.491 0.953 -20.897 20.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.061 4.061 3 C -0.201 4.201 4 C -0.163 4.163 5 C -0.073 4.073 6 C -0.084 4.084 7 C 0.022 3.978 8 C -0.331 4.331 9 C -0.009 4.009 10 N -0.297 5.297 11 C 0.129 3.871 12 C -0.507 4.507 13 H 0.098 0.902 14 C -0.177 4.177 15 N -0.428 5.428 16 Si 0.992 3.008 17 H -0.268 1.268 18 H -0.207 1.207 19 H -0.222 1.222 20 C -0.272 4.272 21 C -0.082 4.082 22 C -0.218 4.218 23 C 0.106 3.894 24 N -0.424 5.424 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.142 0.858 33 H 0.122 0.878 34 H 0.145 0.855 35 H 0.093 0.907 36 H 0.124 0.876 37 H 0.143 0.857 38 H 0.135 0.865 39 H 0.222 0.778 40 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -0.597 1.927 -18.945 19.052 hybrid contribution 1.656 -1.548 -2.302 3.231 sum 1.058 0.379 -21.247 21.276 Atomic orbital electron populations 1.21882 0.94587 1.01927 1.01851 1.19842 0.95709 0.95655 0.94930 1.21862 1.01094 0.95319 1.01802 1.19170 1.03457 0.98655 0.94998 1.20848 0.97665 0.98383 0.90451 1.18747 0.99715 0.97384 0.92567 1.18659 0.94334 0.93983 0.90778 1.21151 1.10038 1.04639 0.97224 1.22008 0.94594 0.95914 0.88394 1.66474 1.19329 1.12852 1.31004 1.18580 0.87862 0.87928 0.92706 1.20777 1.19512 1.18483 0.91941 0.90168 1.27836 0.99904 0.99388 0.90608 1.70656 1.23049 1.18430 1.30674 0.81779 0.73220 0.75800 0.70014 1.26819 1.20702 1.22197 1.21705 1.08572 1.04678 0.92250 1.21071 0.95242 0.95237 0.96681 1.20452 1.06628 1.03302 0.91466 1.17571 0.93670 0.92586 0.85570 1.42499 1.47106 1.48112 1.04706 0.92086 0.92800 0.92675 0.91646 0.92744 0.92816 0.92155 0.85818 0.87765 0.85512 0.90689 0.87569 0.85736 0.86538 0.77826 0.77615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.95 37.15 0.33 -1.07 16 2 C -0.04 -0.43 3.04 -91.78 -0.28 -0.71 16 3 C -0.14 -1.39 9.05 37.16 0.34 -1.05 16 4 C -0.16 -2.08 4.80 -104.47 -0.50 -2.58 16 5 C -0.05 -0.85 8.13 -39.29 -0.32 -1.17 16 6 C -0.08 -1.49 5.88 -104.86 -0.62 -2.11 16 7 C 0.03 0.60 5.91 -104.65 -0.62 -0.02 16 8 C -0.31 -6.36 9.51 -38.81 -0.37 -6.73 16 9 C 0.15 3.37 11.17 -17.61 -0.20 3.17 16 10 N -0.58 -14.90 4.52 -11.21 -0.05 -14.96 16 11 C 0.25 6.69 6.40 -85.02 -0.54 6.14 16 12 C -0.48 -13.18 9.58 -37.69 -0.36 -13.55 16 13 H 0.08 2.21 8.05 -52.49 -0.42 1.79 16 14 C 0.04 1.21 5.52 -17.34 -0.10 1.11 16 15 N -0.81 -22.36 13.65 55.55 0.76 -21.60 16 16 Si 1.16 29.01 25.56 -169.99 -4.34 24.67 16 17 H -0.33 -8.27 7.11 56.52 0.40 -7.87 16 18 H -0.28 -6.96 6.66 56.52 0.38 -6.58 16 19 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 20 C -0.25 -5.94 9.22 -38.33 -0.35 -6.29 16 21 C -0.06 -1.05 9.44 -39.29 -0.37 -1.42 16 22 C -0.20 -2.72 9.88 -39.43 -0.39 -3.11 16 23 C 0.21 2.67 6.74 -83.78 -0.56 2.10 16 24 N -0.88 -7.93 8.99 32.43 0.29 -7.64 16 25 H 0.06 0.63 7.13 -51.93 -0.37 0.26 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.56 5.66 -51.93 -0.29 0.27 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.63 7.68 -51.93 -0.40 0.23 16 32 H 0.12 1.82 5.31 -52.49 -0.28 1.54 16 33 H 0.10 1.83 6.31 -52.49 -0.33 1.50 16 34 H 0.13 2.39 8.06 -52.49 -0.42 1.96 16 35 H 0.28 7.46 8.72 -40.82 -0.36 7.11 16 36 H 0.11 2.36 6.32 -52.48 -0.33 2.03 16 37 H 0.12 2.05 6.28 -52.49 -0.33 1.72 16 38 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.39 2.81 8.84 -40.82 -0.36 2.45 16 40 H 0.39 2.92 6.46 -40.82 -0.26 2.66 16 LS Contribution 322.26 15.07 4.86 4.86 Total: -1.00 -30.18 322.26 -8.49 -38.67 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -5.10 Total: 3.28 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: -4.91 Total: -27.28 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 1.00 Total: -44.19 kcal Atomic # 14 Polarization: 29.01 SS G_CDS: -4.34 Total: 24.67 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.18 -8.49 -38.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244335326.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.399 kcal (2) G-P(sol) polarization free energy of solvation -30.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds