Wall clock time and date at job start Tue Mar 31 2020 05:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47168 * 2 1 4 4 C 1.50692 * 109.47286 * 120.00406 * 2 1 3 5 5 C 1.37665 * 119.96208 * 295.08408 * 4 2 1 6 6 C 1.39832 * 119.92843 * 180.27677 * 5 4 2 7 7 C 1.47635 * 120.07939 * 179.74233 * 6 5 4 8 8 C 1.39796 * 120.65869 * 310.00283 * 7 6 5 9 9 C 1.38310 * 118.46731 * 179.97438 * 8 7 6 10 10 C 1.39093 * 119.75043 * 359.97438 * 9 8 7 11 11 N 1.31260 * 121.36044 * 0.02562 * 10 9 8 12 12 C 1.33737 * 121.63744 * 359.71829 * 11 10 9 13 13 C 1.40719 * 119.94810 * 180.29073 * 12 11 10 14 14 H 1.08007 * 120.00229 * 171.27501 * 13 12 11 15 15 C 1.40114 * 120.00373 * 351.27935 * 13 12 11 16 16 N 1.30723 * 119.99813 * 350.50554 * 15 13 12 17 17 Si 1.86798 * 120.00134 * 170.49914 * 15 13 12 18 18 H 1.48502 * 109.46779 * 94.94760 * 17 15 13 19 19 H 1.48499 * 109.47218 * 214.94725 * 17 15 13 20 20 H 1.48504 * 109.47503 * 334.94889 * 17 15 13 21 21 C 1.39883 * 119.84639 * 359.49263 * 6 5 4 22 22 C 1.37616 * 119.92337 * 0.50644 * 21 6 5 23 23 C 1.39210 * 119.96729 * 115.10242 * 4 2 1 24 24 N 1.39245 * 119.92016 * 359.96120 * 23 4 2 25 25 H 1.08999 * 109.47087 * 299.99233 * 1 2 3 26 26 H 1.08995 * 109.47285 * 59.99785 * 1 2 3 27 27 H 1.09008 * 109.46950 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46730 * 240.00122 * 2 1 3 29 29 H 1.08990 * 109.47274 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.47355 * 300.00569 * 3 2 1 31 31 H 1.09001 * 109.46860 * 59.99723 * 3 2 1 32 32 H 1.08007 * 120.03957 * 359.97438 * 5 4 2 33 33 H 1.07997 * 120.75954 * 359.97438 * 8 7 6 34 34 H 1.08001 * 120.12524 * 180.02562 * 9 8 7 35 35 H 1.07997 * 119.32094 * 179.97438 * 10 9 8 36 36 H 0.97001 * 119.99630 * 179.97438 * 16 15 13 37 37 H 1.08005 * 120.03424 * 180.23105 * 21 6 5 38 38 H 1.07998 * 119.96125 * 179.72740 * 22 21 6 39 39 H 0.97001 * 120.00406 * 9.77655 * 24 23 4 40 40 H 0.97003 * 119.99529 * 189.78205 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2303 5 6 1.7849 -0.1835 2.4778 6 6 2.2563 -0.8402 3.6187 7 6 1.9977 -0.2751 4.9578 8 6 2.2792 1.0666 5.2319 9 6 2.0188 1.5488 6.5017 10 6 1.4883 0.6995 7.4672 11 7 1.2271 -0.5589 7.2008 12 6 1.4527 -1.0813 5.9905 13 6 1.1538 -2.4337 5.7423 14 1 1.2011 -2.8213 4.7352 15 6 0.7946 -3.2778 6.8014 16 7 0.9153 -2.8650 8.0359 17 14 0.1432 -4.9927 6.4495 18 1 1.2598 -5.9695 6.5154 19 1 -0.8858 -5.3483 7.4594 20 1 -0.4623 -5.0238 5.0938 21 6 2.9691 -2.0368 3.4886 22 6 3.2130 -2.5581 2.2385 23 6 2.7465 -1.8987 1.1043 24 7 2.9947 -2.4292 -0.1590 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.2313 0.7389 2.5750 33 1 2.6906 1.7115 4.4695 34 1 2.2257 2.5811 6.7425 35 1 1.2880 1.0833 8.4566 36 1 0.6664 -3.4492 8.7691 37 1 3.3314 -2.5486 4.3679 38 1 3.7670 -3.4796 2.1371 39 1 2.7979 -1.9063 -0.9520 40 1 3.3644 -3.3218 -0.2461 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244340310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:47 Heat of formation + Delta-G solvation = 40.783816 kcal Electronic energy + Delta-G solvation = -21679.393302 eV Core-core repulsion = 18650.803531 eV Total energy + Delta-G solvation = -3028.589771 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.38072 -37.95210 -35.03212 -34.17969 -33.64367 -30.81733 -30.17115 -29.24086 -27.08534 -26.97877 -25.51299 -23.21215 -22.21928 -21.25953 -20.36348 -19.07903 -17.49091 -16.86433 -16.44816 -15.60170 -15.04916 -14.35853 -14.24424 -14.12032 -13.68190 -13.53073 -13.16265 -13.09689 -12.75413 -12.24931 -12.17608 -12.00918 -11.94959 -11.56552 -11.43680 -11.24609 -11.04876 -10.99582 -10.82388 -10.57393 -10.29128 -10.17998 -10.01001 -9.58100 -9.32536 -8.20724 -8.08649 -7.64586 -7.55486 -6.70643 -6.44545 -4.45270 2.11187 2.13000 2.79917 3.08404 3.10003 3.13374 3.23649 3.93844 4.23421 4.56194 4.73425 4.97339 5.07130 5.39515 5.54497 5.66259 5.74438 5.88620 5.90870 5.95724 5.98420 6.02199 6.13684 6.14751 6.24356 6.29522 6.39791 6.43717 6.56058 6.58120 6.79713 6.88997 6.99244 7.05137 7.16816 7.40194 7.46988 7.51001 7.71151 7.84310 8.00476 8.09065 8.09686 8.28346 8.65409 8.94813 10.08806 10.27632 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014889 B = 0.006291 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.167833 B = 4449.891763 C = 5652.507160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C -0.143 4.143 4 C -0.158 4.158 5 C -0.077 4.077 6 C -0.028 4.028 7 C -0.221 4.221 8 C -0.039 4.039 9 C -0.321 4.321 10 C 0.128 3.872 11 N -0.489 5.489 12 C 0.271 3.729 13 C -0.424 4.424 14 H 0.093 0.907 15 C 0.073 3.927 16 N -0.716 5.716 17 Si 0.901 3.099 18 H -0.269 1.269 19 H -0.275 1.275 20 H -0.259 1.259 21 C -0.061 4.061 22 C -0.196 4.196 23 C 0.191 3.809 24 N -0.887 5.887 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.275 0.725 37 H 0.126 0.874 38 H 0.110 0.890 39 H 0.390 0.610 40 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.819 1.292 -12.729 12.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.060 4.060 3 C -0.200 4.200 4 C -0.162 4.162 5 C -0.096 4.096 6 C -0.030 4.030 7 C -0.226 4.226 8 C -0.064 4.064 9 C -0.344 4.344 10 C -0.040 4.040 11 N -0.200 5.200 12 C 0.147 3.853 13 C -0.454 4.454 14 H 0.111 0.889 15 C -0.153 4.153 16 N -0.337 5.337 17 Si 0.725 3.275 18 H -0.194 1.194 19 H -0.200 1.200 20 H -0.183 1.183 21 C -0.079 4.079 22 C -0.218 4.218 23 C 0.089 3.911 24 N -0.430 5.430 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.129 0.871 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.134 0.866 36 H 0.086 0.914 37 H 0.144 0.856 38 H 0.128 0.872 39 H 0.219 0.781 40 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 1.430 0.654 -11.808 11.913 hybrid contribution 0.146 -0.298 -0.967 1.022 sum 1.576 0.356 -12.776 12.877 Atomic orbital electron populations 1.21846 0.94872 1.01792 1.01430 1.19802 0.95497 0.95372 0.95295 1.21866 1.00965 0.95712 1.01504 1.19044 1.05311 0.97216 0.94668 1.20826 0.98808 0.99184 0.90768 1.18486 0.97901 0.94645 0.92008 1.19353 1.14007 0.94681 0.94570 1.20893 0.96235 0.93833 0.95409 1.21182 1.17314 0.99759 0.96127 1.22516 0.93640 0.90708 0.97136 1.68633 1.20427 1.10483 1.20473 1.18517 0.87846 0.92991 0.85940 1.19683 1.37824 0.92649 0.95222 0.88927 1.26090 0.94163 1.00341 0.94685 1.70035 1.29156 1.35069 0.99393 0.86407 0.79448 0.81853 0.79826 1.19402 1.19980 1.18260 1.21167 0.95700 0.94887 0.96180 1.20444 1.07468 1.02184 0.91752 1.17500 0.95141 0.93111 0.85382 1.42342 1.75897 1.19995 1.04758 0.92249 0.93222 0.92755 0.91906 0.92834 0.93169 0.92240 0.87069 0.88747 0.88913 0.86599 0.91396 0.85610 0.87208 0.78058 0.78212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.05 37.16 0.34 -1.44 16 2 C -0.04 -0.52 3.03 -91.77 -0.28 -0.80 16 3 C -0.14 -1.70 8.95 37.16 0.33 -1.36 16 4 C -0.16 -2.56 4.80 -104.47 -0.50 -3.06 16 5 C -0.08 -1.45 8.23 -39.19 -0.32 -1.77 16 6 C -0.03 -0.60 4.98 -104.85 -0.52 -1.12 16 7 C -0.22 -5.37 5.53 -104.08 -0.58 -5.94 16 8 C -0.04 -0.89 9.66 -38.97 -0.38 -1.27 16 9 C -0.32 -7.24 10.10 -39.24 -0.40 -7.63 16 10 C 0.13 3.12 11.17 -17.48 -0.20 2.92 16 11 N -0.49 -13.46 8.02 -10.90 -0.09 -13.54 16 12 C 0.27 7.31 6.51 -84.70 -0.55 6.76 16 13 C -0.42 -11.14 7.72 -37.94 -0.29 -11.43 16 14 H 0.09 2.34 5.65 -52.48 -0.30 2.05 16 15 C 0.07 1.85 5.45 -17.32 -0.09 1.76 16 16 N -0.72 -18.90 11.63 55.56 0.65 -18.26 16 17 Si 0.90 18.65 29.57 -169.99 -5.03 13.63 16 18 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 19 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 20 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 21 C -0.06 -1.23 7.64 -39.19 -0.30 -1.53 16 22 C -0.20 -3.40 9.88 -39.43 -0.39 -3.79 16 23 C 0.19 3.02 6.74 -83.76 -0.56 2.46 16 24 N -0.89 -10.47 8.96 32.45 0.29 -10.18 16 25 H 0.06 0.80 7.68 -51.93 -0.40 0.40 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.71 8.14 -51.92 -0.42 0.28 16 28 H 0.06 0.70 5.68 -51.93 -0.29 0.41 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.50 8.14 -51.92 -0.42 0.07 16 31 H 0.06 0.75 7.12 -51.93 -0.37 0.38 16 32 H 0.11 2.03 7.08 -52.48 -0.37 1.66 16 33 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 34 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 35 H 0.12 2.51 8.06 -52.49 -0.42 2.08 16 36 H 0.27 6.57 8.29 -40.82 -0.34 6.24 16 37 H 0.13 2.69 7.30 -52.48 -0.38 2.31 16 38 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 39 H 0.39 3.92 6.49 -40.82 -0.26 3.65 16 40 H 0.39 3.88 8.85 -40.82 -0.36 3.52 16 LS Contribution 327.89 15.07 4.94 4.94 Total: -1.00 -29.17 327.89 -9.19 -38.36 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -5.26 Total: 12.31 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: -4.69 Total: -27.25 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 0.85 Total: -41.97 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.17 -9.19 -38.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244340310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.139 kcal (2) G-P(sol) polarization free energy of solvation -29.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds