Wall clock time and date at job start Tue Mar 31 2020 05:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47168 * 2 1 4 4 C 1.50692 * 109.47286 * 120.00406 * 2 1 3 5 5 C 1.37665 * 119.96208 * 295.08408 * 4 2 1 6 6 C 1.39832 * 119.92843 * 180.27677 * 5 4 2 7 7 C 1.47635 * 120.07939 * 179.74233 * 6 5 4 8 8 C 1.39796 * 120.65869 * 310.00283 * 7 6 5 9 9 C 1.38310 * 118.46731 * 179.97438 * 8 7 6 10 10 C 1.39093 * 119.75043 * 359.97438 * 9 8 7 11 11 N 1.31260 * 121.36044 * 0.02562 * 10 9 8 12 12 C 1.33737 * 121.63744 * 359.71829 * 11 10 9 13 13 C 1.40719 * 119.94810 * 180.29073 * 12 11 10 14 14 H 1.08007 * 120.00229 * 171.27501 * 13 12 11 15 15 C 1.40114 * 120.00373 * 351.27935 * 13 12 11 16 16 N 1.30723 * 119.99813 * 350.50554 * 15 13 12 17 17 Si 1.86798 * 120.00134 * 170.49914 * 15 13 12 18 18 H 1.48502 * 109.46779 * 94.94760 * 17 15 13 19 19 H 1.48499 * 109.47218 * 214.94725 * 17 15 13 20 20 H 1.48504 * 109.47503 * 334.94889 * 17 15 13 21 21 C 1.39883 * 119.84639 * 359.49263 * 6 5 4 22 22 C 1.37616 * 119.92337 * 0.50644 * 21 6 5 23 23 C 1.39210 * 119.96729 * 115.10242 * 4 2 1 24 24 N 1.39245 * 119.92016 * 359.96120 * 23 4 2 25 25 H 1.08999 * 109.47087 * 299.99233 * 1 2 3 26 26 H 1.08995 * 109.47285 * 59.99785 * 1 2 3 27 27 H 1.09008 * 109.46950 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46730 * 240.00122 * 2 1 3 29 29 H 1.08990 * 109.47274 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.47355 * 300.00569 * 3 2 1 31 31 H 1.09001 * 109.46860 * 59.99723 * 3 2 1 32 32 H 1.08007 * 120.03957 * 359.97438 * 5 4 2 33 33 H 1.07997 * 120.75954 * 359.97438 * 8 7 6 34 34 H 1.08001 * 120.12524 * 180.02562 * 9 8 7 35 35 H 1.07997 * 119.32094 * 179.97438 * 10 9 8 36 36 H 0.97001 * 119.99630 * 179.97438 * 16 15 13 37 37 H 1.08005 * 120.03424 * 180.23105 * 21 6 5 38 38 H 1.07998 * 119.96125 * 179.72740 * 22 21 6 39 39 H 0.97001 * 120.00406 * 9.77655 * 24 23 4 40 40 H 0.97003 * 119.99529 * 189.78205 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2303 5 6 1.7849 -0.1835 2.4778 6 6 2.2563 -0.8402 3.6187 7 6 1.9977 -0.2751 4.9578 8 6 2.2792 1.0666 5.2319 9 6 2.0188 1.5488 6.5017 10 6 1.4883 0.6995 7.4672 11 7 1.2271 -0.5589 7.2008 12 6 1.4527 -1.0813 5.9905 13 6 1.1538 -2.4337 5.7423 14 1 1.2011 -2.8213 4.7352 15 6 0.7946 -3.2778 6.8014 16 7 0.9153 -2.8650 8.0359 17 14 0.1432 -4.9927 6.4495 18 1 1.2598 -5.9695 6.5154 19 1 -0.8858 -5.3483 7.4594 20 1 -0.4623 -5.0238 5.0938 21 6 2.9691 -2.0368 3.4886 22 6 3.2130 -2.5581 2.2385 23 6 2.7465 -1.8987 1.1043 24 7 2.9947 -2.4292 -0.1590 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.2313 0.7389 2.5750 33 1 2.6906 1.7115 4.4695 34 1 2.2257 2.5811 6.7425 35 1 1.2880 1.0833 8.4566 36 1 0.6664 -3.4492 8.7691 37 1 3.3314 -2.5486 4.3679 38 1 3.7670 -3.4796 2.1371 39 1 2.7979 -1.9063 -0.9520 40 1 3.3644 -3.3218 -0.2461 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244340310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:46 Heat of formation + Delta-G solvation = 25.038196 kcal Electronic energy + Delta-G solvation = -21680.076083 eV Core-core repulsion = 18650.803531 eV Total energy + Delta-G solvation = -3029.272552 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.80786 -39.68289 -36.27574 -35.50886 -35.43223 -32.51695 -31.97482 -30.60618 -28.61903 -27.92576 -27.32707 -24.56271 -23.78235 -23.09512 -21.81925 -20.40389 -19.36708 -18.07700 -17.70074 -17.38277 -16.57343 -16.07379 -15.99352 -15.28208 -15.02217 -14.78018 -14.49342 -14.39197 -14.34830 -13.90674 -13.80299 -13.39896 -13.14328 -12.99343 -12.93647 -12.81490 -12.73289 -12.43433 -12.09112 -11.97414 -11.83197 -11.45938 -11.36086 -11.18808 -11.08536 -10.03373 -9.54284 -9.45740 -9.40412 -8.41344 -7.98002 -6.37590 0.53754 0.71691 1.02782 1.36642 1.37677 1.49732 1.54165 2.21314 2.84545 3.12155 3.17124 3.87845 3.95369 4.03602 4.22737 4.29476 4.38575 4.40978 4.55543 4.59177 4.68595 4.73412 4.83881 4.85299 5.00486 5.03302 5.05135 5.15374 5.19094 5.23720 5.36678 5.41610 5.44458 5.47306 5.61760 5.70204 5.83525 5.92179 6.16701 6.19319 6.26444 6.36996 6.75762 6.78929 7.03893 7.15664 8.19834 8.43870 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014889 B = 0.006291 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.167833 B = 4449.891763 C = 5652.507160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.039 4.039 3 C -0.142 4.142 4 C -0.157 4.157 5 C -0.077 4.077 6 C -0.066 4.066 7 C -0.222 4.222 8 C -0.052 4.052 9 C -0.311 4.311 10 C 0.102 3.898 11 N -0.527 5.527 12 C 0.236 3.764 13 C -0.451 4.451 14 H 0.092 0.908 15 C 0.030 3.970 16 N -0.758 5.758 17 Si 0.974 3.026 18 H -0.258 1.258 19 H -0.267 1.267 20 H -0.259 1.259 21 C -0.075 4.075 22 C -0.201 4.201 23 C 0.204 3.796 24 N -0.867 5.867 25 H 0.041 0.959 26 H 0.075 0.925 27 H 0.046 0.954 28 H 0.087 0.913 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.125 0.875 35 H 0.136 0.864 36 H 0.280 0.720 37 H 0.101 0.899 38 H 0.132 0.868 39 H 0.403 0.597 40 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.996 1.155 -16.078 16.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.057 4.057 3 C -0.199 4.199 4 C -0.162 4.162 5 C -0.096 4.096 6 C -0.069 4.069 7 C -0.227 4.227 8 C -0.076 4.076 9 C -0.334 4.334 10 C -0.064 4.064 11 N -0.239 5.239 12 C 0.112 3.888 13 C -0.481 4.481 14 H 0.110 0.890 15 C -0.192 4.192 16 N -0.380 5.380 17 Si 0.795 3.205 18 H -0.182 1.182 19 H -0.192 1.192 20 H -0.183 1.183 21 C -0.094 4.094 22 C -0.224 4.224 23 C 0.099 3.901 24 N -0.410 5.410 25 H 0.061 0.939 26 H 0.094 0.906 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.128 0.872 33 H 0.138 0.862 34 H 0.143 0.857 35 H 0.153 0.847 36 H 0.091 0.909 37 H 0.119 0.881 38 H 0.150 0.850 39 H 0.235 0.765 40 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 1.626 0.535 -15.191 15.287 hybrid contribution 0.167 -0.137 -0.091 0.234 sum 1.792 0.398 -15.282 15.392 Atomic orbital electron populations 1.21836 0.94563 1.01485 1.01945 1.19897 0.95676 0.95899 0.94275 1.21850 1.00875 0.95034 1.02117 1.19391 1.04429 0.97308 0.95083 1.20827 0.98607 0.99042 0.91080 1.18477 1.00715 0.96115 0.91553 1.19727 1.12288 0.95184 0.95509 1.21250 0.96303 0.93862 0.96231 1.21525 1.15345 1.00953 0.95577 1.22940 0.94353 0.90423 0.98638 1.68553 1.21946 1.12043 1.21376 1.18976 0.88929 0.94097 0.86767 1.19868 1.39489 0.93148 0.95641 0.88978 1.26945 0.93885 1.04228 0.94156 1.70124 1.30654 1.36888 1.00362 0.85315 0.79015 0.76743 0.79472 1.18238 1.19199 1.18261 1.21008 0.96791 0.94881 0.96740 1.20609 1.07637 1.03044 0.91077 1.17568 0.93531 0.92507 0.86491 1.42274 1.74548 1.20648 1.03579 0.93937 0.90570 0.93476 0.89458 0.92956 0.90700 0.93556 0.87162 0.86178 0.85689 0.84710 0.90914 0.88120 0.85003 0.76503 0.76650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 9.05 71.98 0.65 -2.47 16 2 C -0.04 -0.87 3.03 -11.54 -0.04 -0.90 16 3 C -0.14 -2.91 8.95 71.98 0.64 -2.26 16 4 C -0.16 -4.77 4.80 -19.77 -0.09 -4.87 16 5 C -0.08 -2.86 8.23 22.52 0.19 -2.67 16 6 C -0.07 -2.91 4.98 -20.01 -0.10 -3.00 16 7 C -0.22 -11.19 5.53 -19.51 -0.11 -11.30 16 8 C -0.05 -2.40 9.66 22.66 0.22 -2.18 16 9 C -0.31 -14.05 10.10 22.49 0.23 -13.82 16 10 C 0.10 5.12 11.17 84.98 0.95 6.07 16 11 N -0.53 -30.39 8.02 -188.40 -1.51 -31.90 16 12 C 0.24 13.43 6.51 40.37 0.26 13.69 16 13 C -0.45 -24.91 7.72 23.33 0.18 -24.73 16 14 H 0.09 4.90 5.65 -2.91 -0.02 4.89 16 15 C 0.03 1.56 5.45 85.31 0.47 2.03 16 16 N -0.76 -41.87 11.63 21.85 0.25 -41.62 16 17 Si 0.97 39.35 29.57 68.60 2.03 41.37 16 18 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 19 H -0.27 -10.35 7.11 99.48 0.71 -9.65 16 20 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 21 C -0.08 -3.14 7.64 22.52 0.17 -2.97 16 22 C -0.20 -6.74 9.88 22.36 0.22 -6.52 16 23 C 0.20 5.92 6.74 38.44 0.26 6.18 16 24 N -0.87 -16.88 8.96 -51.25 -0.46 -17.34 16 25 H 0.04 1.08 7.68 -2.39 -0.02 1.06 16 26 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.09 1.53 5.68 -2.39 -0.01 1.51 16 29 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.05 1.07 7.12 -2.39 -0.02 1.05 16 32 H 0.11 4.02 7.08 -2.91 -0.02 4.00 16 33 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 34 H 0.13 4.73 8.06 -2.91 -0.02 4.71 16 35 H 0.14 5.97 8.06 -2.91 -0.02 5.95 16 36 H 0.28 13.98 8.29 -92.71 -0.77 13.21 16 37 H 0.10 4.60 7.30 -2.91 -0.02 4.58 16 38 H 0.13 3.73 8.06 -2.91 -0.02 3.70 16 39 H 0.40 6.13 6.49 -92.71 -0.60 5.52 16 40 H 0.40 6.29 8.85 -92.71 -0.82 5.47 16 Total: -1.00 -66.69 327.89 4.06 -62.62 By element: Atomic # 1 Polarization: 36.94 SS G_CDS: -0.35 Total: 36.59 kcal Atomic # 6 Polarization: -53.82 SS G_CDS: 4.10 Total: -49.72 kcal Atomic # 7 Polarization: -89.15 SS G_CDS: -1.72 Total: -90.87 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.37 kcal Total: -66.69 4.06 -62.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244340310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.662 kcal (2) G-P(sol) polarization free energy of solvation -66.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds