Wall clock time and date at job start Tue Mar 31 2020 05:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.46774 * 2 1 4 4 C 1.50697 * 109.46870 * 119.99561 * 2 1 3 5 5 C 1.37680 * 119.96821 * 295.33250 * 4 2 1 6 6 C 1.39808 * 119.92513 * 180.02562 * 5 4 2 7 7 C 1.47675 * 120.07313 * 180.02562 * 6 5 4 8 8 C 1.39436 * 120.79197 * 309.97197 * 7 6 5 9 9 N 1.31621 * 120.64205 * 179.97438 * 8 7 6 10 10 C 1.32249 * 122.52362 * 0.02562 * 9 8 7 11 11 C 1.36421 * 121.53175 * 0.02562 * 10 9 8 12 12 C 1.41148 * 119.12035 * 359.69913 * 11 10 9 13 13 C 1.40843 * 121.11762 * 180.31757 * 12 11 10 14 14 H 1.08000 * 120.00026 * 153.36380 * 13 12 11 15 15 C 1.40133 * 119.99883 * 333.36568 * 13 12 11 16 16 N 1.30715 * 120.00359 * 347.74050 * 15 13 12 17 17 Si 1.86804 * 120.00053 * 167.74037 * 15 13 12 18 18 H 1.48504 * 109.47071 * 89.99622 * 17 15 13 19 19 H 1.48499 * 109.47331 * 209.99562 * 17 15 13 20 20 H 1.48495 * 109.46963 * 330.00246 * 17 15 13 21 21 C 1.39853 * 119.85626 * 359.97438 * 6 5 4 22 22 C 1.37636 * 119.92293 * 0.02562 * 21 6 5 23 23 C 1.39200 * 119.95736 * 115.60633 * 4 2 1 24 24 N 1.39270 * 119.92788 * 0.02562 * 23 4 2 25 25 H 1.08999 * 109.46766 * 60.00182 * 1 2 3 26 26 H 1.09000 * 109.47017 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47082 * 300.00036 * 1 2 3 28 28 H 1.08992 * 109.47213 * 240.00045 * 2 1 3 29 29 H 1.09004 * 109.46932 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47651 * 299.99839 * 3 2 1 31 31 H 1.08999 * 109.47495 * 59.99764 * 3 2 1 32 32 H 1.08001 * 120.03332 * 359.97438 * 5 4 2 33 33 H 1.07996 * 119.67515 * 0.02562 * 8 7 6 34 34 H 1.07999 * 119.23635 * 179.97438 * 10 9 8 35 35 H 1.08002 * 120.44139 * 179.97438 * 11 10 9 36 36 H 0.96996 * 120.00270 * 179.97438 * 16 15 13 37 37 H 1.08000 * 120.03834 * 179.97438 * 21 6 5 38 38 H 1.08000 * 119.96202 * 179.97438 * 22 21 6 39 39 H 0.97005 * 119.99460 * 187.27206 * 24 23 4 40 40 H 0.96997 * 120.00419 * 7.26554 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 1.7804 -0.1859 2.4783 6 6 2.2473 -0.8453 3.6193 7 6 1.9784 -0.2860 4.9593 8 6 2.2523 1.0515 5.2427 9 7 2.0111 1.5471 6.4379 10 6 1.5056 0.8201 7.4203 11 6 1.2027 -0.4989 7.2488 12 6 1.4292 -1.0978 5.9909 13 6 1.1256 -2.4545 5.7654 14 1 0.8875 -2.7962 4.7689 15 6 1.1324 -3.3610 6.8340 16 7 1.6467 -3.0120 7.9840 17 14 0.4066 -5.0683 6.6152 18 1 1.4635 -5.9988 6.1436 19 1 -0.1314 -5.5476 7.9137 20 1 -0.6891 -5.0158 5.6144 21 6 2.9685 -2.0364 3.4889 22 6 3.2169 -2.5552 2.2385 23 6 2.7555 -1.8930 1.1039 24 7 3.0139 -2.4175 -0.1601 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.2235 0.7344 2.5756 33 1 2.6656 1.6872 4.4736 34 1 1.3292 1.2812 8.3808 35 1 0.7909 -1.0762 8.0634 36 1 1.6511 -3.6393 8.7237 37 1 3.3309 -2.5480 4.3683 38 1 3.7742 -3.4748 2.1370 39 1 3.4240 -3.2922 -0.2476 40 1 2.7838 -1.9082 -0.9529 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244342789.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:55 Heat of formation + Delta-G solvation = 30.701014 kcal Electronic energy + Delta-G solvation = -21667.181923 eV Core-core repulsion = 18638.154928 eV Total energy + Delta-G solvation = -3029.026994 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.39047 -38.10654 -35.05910 -34.26746 -34.02702 -30.84643 -30.02960 -29.14695 -27.05647 -26.97268 -25.76008 -23.20209 -22.19722 -21.37741 -20.39189 -19.04399 -17.58846 -16.88407 -16.44652 -15.59128 -15.02418 -14.48158 -14.31291 -14.15811 -13.67515 -13.51413 -13.13543 -13.12292 -12.72266 -12.53164 -12.27363 -12.12601 -11.95879 -11.60066 -11.43908 -11.42357 -11.15938 -11.01167 -10.94780 -10.49968 -10.33193 -10.16389 -9.90956 -9.67925 -9.43595 -8.13133 -7.98677 -7.92882 -7.65806 -6.91739 -6.57773 -4.56868 2.08630 2.13387 2.76920 2.95364 3.00657 3.05789 3.24772 3.83832 4.22378 4.55529 4.65017 4.97544 5.07268 5.39912 5.53835 5.62186 5.71579 5.75221 5.83310 5.93468 5.95616 5.99736 6.06475 6.15703 6.25691 6.34915 6.40414 6.44269 6.56177 6.78721 6.87973 6.92133 6.98404 7.13243 7.17080 7.42059 7.45360 7.54787 7.66017 7.88383 8.01826 8.08310 8.12624 8.46859 8.72090 8.76552 9.65312 10.04195 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014888 B = 0.006268 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.300001 B = 4465.921420 C = 5698.571217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C -0.143 4.143 4 C -0.160 4.160 5 C -0.076 4.076 6 C -0.031 4.031 7 C -0.217 4.217 8 C 0.120 3.880 9 N -0.577 5.577 10 C 0.077 3.923 11 C -0.206 4.206 12 C 0.142 3.858 13 C -0.440 4.440 14 H 0.086 0.914 15 C 0.076 3.924 16 N -0.786 5.786 17 Si 0.908 3.092 18 H -0.267 1.267 19 H -0.275 1.275 20 H -0.259 1.259 21 C -0.053 4.053 22 C -0.198 4.198 23 C 0.193 3.807 24 N -0.887 5.887 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.112 0.888 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.127 0.873 36 H 0.283 0.717 37 H 0.125 0.875 38 H 0.109 0.891 39 H 0.391 0.609 40 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.260 -0.520 -12.304 12.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.060 4.060 3 C -0.201 4.201 4 C -0.164 4.164 5 C -0.094 4.094 6 C -0.034 4.034 7 C -0.223 4.223 8 C -0.037 4.037 9 N -0.292 5.292 10 C -0.071 4.071 11 C -0.228 4.228 12 C 0.134 3.866 13 C -0.471 4.471 14 H 0.104 0.896 15 C -0.143 4.143 16 N -0.411 5.411 17 Si 0.732 3.268 18 H -0.193 1.193 19 H -0.200 1.200 20 H -0.183 1.183 21 C -0.072 4.072 22 C -0.221 4.221 23 C 0.091 3.909 24 N -0.429 5.429 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.130 0.870 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.144 0.856 36 H 0.094 0.906 37 H 0.143 0.857 38 H 0.127 0.873 39 H 0.218 0.782 40 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 0.470 0.313 -11.786 11.800 hybrid contribution -0.372 -2.019 -0.368 2.086 sum 0.097 -1.706 -12.155 12.274 Atomic orbital electron populations 1.21849 0.94903 1.01738 1.01456 1.19801 0.95461 0.95432 0.95260 1.21869 1.01016 0.95644 1.01549 1.19030 1.05478 0.97213 0.94686 1.20834 0.98728 0.99117 0.90756 1.18445 0.98246 0.94807 0.91892 1.19569 1.12374 0.95605 0.94705 1.22096 0.96498 0.91822 0.93331 1.67278 1.21104 1.39492 1.01297 1.21692 0.97196 0.91972 0.96252 1.21939 1.06431 0.94669 0.99805 1.17779 0.86122 0.92636 0.90049 1.19548 1.39801 0.92278 0.95469 0.89627 1.25997 0.92728 1.01248 0.94352 1.69743 1.31693 1.36921 1.02786 0.86288 0.80358 0.81168 0.78938 1.19255 1.19994 1.18297 1.21148 0.95252 0.94657 0.96112 1.20442 1.07761 1.02119 0.91745 1.17518 0.95013 0.93017 0.85345 1.42371 1.73089 1.22711 1.04756 0.93214 0.92808 0.92233 0.91937 0.92789 0.93175 0.92167 0.86954 0.86304 0.86616 0.85576 0.90575 0.85673 0.87271 0.78213 0.78024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.05 37.16 0.34 -1.41 16 2 C -0.04 -0.52 3.04 -91.77 -0.28 -0.79 16 3 C -0.14 -1.69 8.95 37.16 0.33 -1.36 16 4 C -0.16 -2.55 4.80 -104.47 -0.50 -3.05 16 5 C -0.08 -1.39 8.22 -39.20 -0.32 -1.71 16 6 C -0.03 -0.66 5.00 -104.85 -0.52 -1.19 16 7 C -0.22 -5.19 5.53 -104.04 -0.58 -5.77 16 8 C 0.12 2.82 10.71 -17.20 -0.18 2.63 16 9 N -0.58 -14.17 10.31 -13.35 -0.14 -14.31 16 10 C 0.08 1.87 11.08 -18.03 -0.20 1.67 16 11 C -0.21 -5.27 8.71 -39.13 -0.34 -5.61 16 12 C 0.14 3.66 5.59 -106.25 -0.59 3.07 16 13 C -0.44 -11.06 7.27 -37.89 -0.28 -11.33 16 14 H 0.09 2.14 6.77 -52.49 -0.36 1.78 16 15 C 0.08 1.82 5.27 -17.32 -0.09 1.73 16 16 N -0.79 -19.35 10.84 55.56 0.60 -18.75 16 17 Si 0.91 18.07 29.58 -169.99 -5.03 13.04 16 18 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 19 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 20 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 21 C -0.05 -1.07 8.10 -39.20 -0.32 -1.39 16 22 C -0.20 -3.43 9.88 -39.43 -0.39 -3.82 16 23 C 0.19 3.03 6.74 -83.75 -0.56 2.47 16 24 N -0.89 -10.37 8.98 32.45 0.29 -10.08 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.79 7.67 -51.93 -0.40 0.39 16 28 H 0.06 0.69 5.66 -51.93 -0.29 0.40 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.75 7.13 -51.93 -0.37 0.38 16 32 H 0.11 2.00 7.08 -52.49 -0.37 1.63 16 33 H 0.12 2.48 8.05 -52.49 -0.42 2.06 16 34 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 35 H 0.13 3.27 6.23 -52.49 -0.33 2.94 16 36 H 0.28 6.35 8.29 -40.82 -0.34 6.01 16 37 H 0.13 2.72 7.38 -52.49 -0.39 2.33 16 38 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.39 3.85 8.84 -40.82 -0.36 3.49 16 40 H 0.39 3.88 6.46 -40.82 -0.26 3.62 16 LS Contribution 327.22 15.07 4.93 4.93 Total: -1.00 -27.58 327.22 -9.05 -36.64 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -5.22 Total: 14.39 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: -4.49 Total: -25.86 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 0.76 Total: -43.14 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.58 -9.05 -36.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244342789.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.336 kcal (2) G-P(sol) polarization free energy of solvation -27.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds