Wall clock time and date at job start Tue Mar 31 2020 05:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46825 * 2 1 4 4 N 1.46891 * 109.47519 * 239.99839 * 2 1 3 5 5 C 1.50703 * 109.46937 * 119.99450 * 2 1 3 6 6 C 1.38335 * 119.86935 * 150.00529 * 5 2 1 7 7 C 1.38007 * 120.12365 * 179.97438 * 6 5 2 8 8 C 1.39388 * 119.87340 * 0.02562 * 7 6 5 9 9 C 1.48303 * 120.12344 * 179.97438 * 8 7 6 10 10 C 1.39904 * 119.60669 * 193.71824 * 9 8 7 11 11 C 1.38692 * 119.46677 * 180.02562 * 10 9 8 12 12 C 1.38291 * 118.68887 * 0.02562 * 11 10 9 13 13 C 1.40691 * 119.18339 * 359.97438 * 12 11 10 14 14 C 1.41385 * 119.76147 * 180.27947 * 13 12 11 15 15 H 1.07993 * 120.00072 * 351.73661 * 14 13 12 16 16 C 1.40015 * 119.99511 * 171.73596 * 14 13 12 17 17 N 1.30747 * 120.00059 * 168.40677 * 16 14 13 18 18 Si 1.86799 * 120.00215 * 348.40931 * 16 14 13 19 19 H 1.48500 * 109.47272 * 85.28721 * 18 16 14 20 20 H 1.48503 * 109.47046 * 205.28873 * 18 16 14 21 21 H 1.48507 * 109.47015 * 325.28673 * 18 16 14 22 22 N 1.32216 * 119.60957 * 13.74156 * 9 8 7 23 23 C 1.39387 * 119.74824 * 0.24914 * 8 7 6 24 24 C 1.38010 * 119.87200 * 359.49572 * 23 8 7 25 25 H 1.08996 * 109.47245 * 300.00376 * 1 2 3 26 26 H 1.08998 * 109.46742 * 60.00388 * 1 2 3 27 27 H 1.09003 * 109.46760 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47224 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.46921 * 299.99867 * 3 2 1 30 30 H 1.09001 * 109.47221 * 59.99422 * 3 2 1 31 31 H 1.00907 * 111.00170 * 299.99917 * 4 2 1 32 32 H 1.00908 * 111.00141 * 63.95040 * 4 2 1 33 33 H 1.07997 * 119.93984 * 359.95544 * 6 5 2 34 34 H 1.07997 * 120.06437 * 180.02562 * 7 6 5 35 35 H 1.08003 * 120.26877 * 359.97438 * 10 9 8 36 36 H 1.08004 * 120.65673 * 180.02562 * 11 10 9 37 37 H 1.08000 * 120.40754 * 180.02562 * 12 11 10 38 38 H 0.96991 * 120.00455 * 180.02562 * 17 16 14 39 39 H 1.07995 * 120.06281 * 179.72808 * 23 8 7 40 40 H 1.08002 * 119.93605 * 180.25170 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6925 -1.1993 5 6 2.0323 -0.7103 1.2306 6 6 3.2415 -1.3813 1.1934 7 6 3.7067 -2.0331 2.3174 8 6 2.9555 -2.0148 3.4914 9 6 3.4499 -2.7139 4.7023 10 6 2.5794 -2.9390 5.7742 11 6 3.0450 -3.5925 6.9055 12 6 4.3650 -4.0037 6.9386 13 6 5.1912 -3.7481 5.8289 14 6 6.5410 -4.1683 5.8474 15 1 6.9716 -4.5619 6.7561 16 6 7.3194 -4.0740 4.6874 17 7 8.6141 -4.2440 4.7532 18 14 6.5082 -3.7053 3.0456 19 1 6.3587 -2.2365 2.8861 20 1 7.3512 -4.2394 1.9459 21 1 5.1697 -4.3470 2.9996 22 7 4.7081 -3.1165 4.7562 23 6 1.7351 -1.3420 3.5212 24 6 1.2823 -0.6892 2.3927 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6765 1.9564 0.8899 31 1 1.6963 -1.6480 -1.2226 32 1 1.7503 -0.1990 -2.0372 33 1 3.8223 -1.3954 0.2831 34 1 4.6510 -2.5563 2.2874 35 1 1.5534 -2.6058 5.7216 36 1 2.3896 -3.7768 7.7439 37 1 4.7565 -4.5153 7.8054 38 1 9.1534 -4.1784 3.9497 39 1 1.1469 -1.3283 4.4268 40 1 0.3389 -0.1641 2.4158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245907608.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:48 Heat of formation + Delta-G solvation = 42.578597 kcal Electronic energy + Delta-G solvation = -21425.557528 eV Core-core repulsion = 18397.045584 eV Total energy + Delta-G solvation = -3028.511943 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.72887 -38.52634 -36.42858 -33.72835 -31.75598 -31.38997 -30.71330 -29.53134 -28.45911 -27.43535 -25.77153 -23.60321 -22.44441 -21.26926 -20.61441 -19.42300 -17.67638 -17.04434 -16.00625 -15.40320 -15.26096 -14.88097 -14.65897 -14.34158 -13.93318 -13.70696 -13.40178 -13.29253 -12.93625 -12.88052 -12.57400 -12.27738 -12.03830 -11.96362 -11.79439 -11.53891 -11.37334 -10.95488 -10.80360 -10.63367 -10.47790 -10.31896 -9.89743 -9.43551 -8.89806 -8.79469 -8.53445 -8.50399 -7.72867 -7.44787 -6.93760 -4.72829 1.32011 1.80595 2.57658 2.73541 3.38883 3.47419 3.58768 4.11513 4.32247 4.33702 4.58721 4.61380 4.90085 4.99564 5.08636 5.27971 5.36473 5.41503 5.55344 5.55985 5.66200 5.72366 5.80968 5.84236 5.88469 6.02226 6.13775 6.20630 6.25251 6.41598 6.50767 6.52858 6.61850 6.77655 6.94121 7.01899 7.13258 7.15429 7.28326 7.32691 7.37689 7.48567 7.80607 8.09018 8.49035 8.55083 9.47892 9.97722 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.020594 B = 0.005299 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.315743 B = 5282.653610 C = 6412.653882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.156 3.844 3 C -0.135 4.135 4 N -0.837 5.837 5 C -0.086 4.086 6 C -0.102 4.102 7 C -0.105 4.105 8 C -0.025 4.025 9 C 0.200 3.800 10 C -0.296 4.296 11 C -0.049 4.049 12 C -0.254 4.254 13 C 0.247 3.753 14 C -0.410 4.410 15 H 0.097 0.903 16 C 0.080 3.920 17 N -0.797 5.797 18 Si 0.995 3.005 19 H -0.269 1.269 20 H -0.331 1.331 21 H -0.260 1.260 22 N -0.560 5.560 23 C -0.106 4.106 24 C -0.124 4.124 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.343 0.657 32 H 0.339 0.661 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.289 0.711 39 H 0.125 0.875 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.676 7.503 -9.368 18.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.063 3.937 3 C -0.193 4.193 4 N -0.367 5.367 5 C -0.087 4.087 6 C -0.120 4.120 7 C -0.123 4.123 8 C -0.026 4.026 9 C 0.059 3.941 10 C -0.319 4.319 11 C -0.073 4.073 12 C -0.276 4.276 13 C 0.123 3.877 14 C -0.441 4.441 15 H 0.115 0.885 16 C -0.143 4.143 17 N -0.420 5.420 18 Si 0.832 3.168 19 H -0.197 1.197 20 H -0.264 1.264 21 H -0.186 1.186 22 N -0.278 5.278 23 C -0.125 4.125 24 C -0.143 4.143 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.157 0.843 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.100 0.900 39 H 0.143 0.857 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.065 7.727 -9.725 17.316 hybrid contribution -1.744 -0.169 0.029 1.753 sum -13.809 7.558 -9.696 18.489 Atomic orbital electron populations 1.22688 0.96769 1.02192 1.02222 1.19571 0.91578 0.93785 0.88726 1.21820 1.02355 0.93671 1.01442 1.58858 1.67550 1.06555 1.03727 1.19642 0.95561 0.99445 0.94074 1.21007 0.95673 0.97006 0.98314 1.21866 1.00124 0.98213 0.92117 1.18845 0.93988 0.96932 0.92843 1.19361 0.89913 0.93337 0.91444 1.21079 0.99724 1.14332 0.96794 1.20897 0.95123 0.95078 0.96177 1.21664 0.94496 1.10357 1.01116 1.18515 0.93419 0.88723 0.87030 1.19536 0.92125 1.33582 0.98818 0.88543 1.26450 0.94339 0.89608 1.03858 1.69626 1.06484 1.33071 1.32802 0.84869 0.76862 0.79632 0.75479 1.19682 1.26399 1.18638 1.66632 1.13723 1.19978 1.27508 1.21161 0.95485 0.97562 0.98320 1.20871 0.99782 1.00909 0.92719 0.91570 0.92704 0.92364 0.91552 0.92784 0.92019 0.84336 0.84797 0.85150 0.85192 0.87657 0.87714 0.87356 0.90048 0.85697 0.86270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.59 8.06 37.16 0.30 -1.29 16 2 C 0.16 1.67 1.06 -132.75 -0.14 1.53 16 3 C -0.14 -1.38 8.72 37.16 0.32 -1.05 16 4 N -0.84 -8.24 7.75 -0.19 0.00 -8.24 16 5 C -0.09 -1.23 4.80 -104.55 -0.50 -1.73 16 6 C -0.10 -1.72 9.30 -39.63 -0.37 -2.09 16 7 C -0.10 -2.15 9.56 -39.24 -0.38 -2.52 16 8 C -0.03 -0.52 5.86 -104.90 -0.61 -1.13 16 9 C 0.20 4.66 6.69 -82.94 -0.55 4.11 16 10 C -0.30 -6.24 9.44 -38.79 -0.37 -6.60 16 11 C -0.05 -1.03 10.15 -39.39 -0.40 -1.43 16 12 C -0.25 -5.95 9.83 -38.64 -0.38 -6.33 16 13 C 0.25 6.51 6.32 -85.01 -0.54 5.97 16 14 C -0.41 -11.32 9.68 -37.72 -0.37 -11.69 16 15 H 0.10 2.68 8.06 -52.49 -0.42 2.26 16 16 C 0.08 2.19 5.52 -17.35 -0.10 2.09 16 17 N -0.80 -21.61 13.92 55.55 0.77 -20.83 16 18 Si 1.00 24.74 22.26 -169.99 -3.78 20.96 16 19 H -0.27 -6.73 6.55 56.52 0.37 -6.36 16 20 H -0.33 -7.94 7.11 56.52 0.40 -7.53 16 21 H -0.26 -6.65 6.28 56.52 0.36 -6.29 16 22 N -0.56 -14.58 4.38 -7.68 -0.03 -14.61 16 23 C -0.11 -1.77 9.38 -39.24 -0.37 -2.14 16 24 C -0.12 -1.76 9.12 -39.63 -0.36 -2.12 16 25 H 0.07 0.56 6.50 -51.93 -0.34 0.23 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.34 3.27 8.99 -39.29 -0.35 2.92 16 32 H 0.34 2.61 8.98 -39.29 -0.35 2.25 16 33 H 0.13 2.07 7.39 -52.49 -0.39 1.68 16 34 H 0.13 2.93 2.42 -52.49 -0.13 2.80 16 35 H 0.11 1.89 6.39 -52.48 -0.34 1.55 16 36 H 0.10 1.81 8.06 -52.48 -0.42 1.38 16 37 H 0.11 2.34 8.06 -52.49 -0.42 1.92 16 38 H 0.29 7.15 8.29 -40.82 -0.34 6.81 16 39 H 0.13 1.86 6.38 -52.49 -0.33 1.52 16 40 H 0.12 1.34 6.15 -52.49 -0.32 1.02 16 LS Contribution 318.11 15.07 4.79 4.79 Total: -1.00 -29.31 318.11 -8.20 -37.51 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -5.15 Total: 6.82 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: -4.81 Total: -26.41 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: 0.74 Total: -43.68 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -3.78 Total: 20.96 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.31 -8.20 -37.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245907608.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.092 kcal (2) G-P(sol) polarization free energy of solvation -29.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds