Wall clock time and date at job start Tue Mar 31 2020 05:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47335 * 2 1 4 4 N 1.46902 * 109.47225 * 239.99918 * 2 1 3 5 5 C 1.50701 * 109.47034 * 120.00197 * 2 1 3 6 6 C 1.38405 * 119.84723 * 149.99357 * 5 2 1 7 7 C 1.37918 * 120.15500 * 179.97438 * 6 5 2 8 8 C 1.39673 * 119.84173 * 0.02562 * 7 6 5 9 9 C 1.47822 * 120.14965 * 179.97438 * 8 7 6 10 10 N 1.32580 * 119.98765 * 316.27161 * 9 8 7 11 11 C 1.31741 * 121.72015 * 179.97438 * 10 9 8 12 12 C 1.38870 * 121.50650 * 0.02562 * 11 10 9 13 13 C 1.36886 * 119.79600 * 359.97438 * 12 11 10 14 14 C 1.41121 * 118.39778 * 0.26762 * 13 12 11 15 15 C 1.40881 * 120.71973 * 179.72416 * 14 13 12 16 16 H 1.08007 * 119.99910 * 150.47246 * 15 14 13 17 17 C 1.40070 * 120.00434 * 330.47698 * 15 14 13 18 18 N 1.30767 * 120.00494 * 163.31467 * 17 15 14 19 19 Si 1.86803 * 119.99735 * 343.30979 * 17 15 14 20 20 H 1.48502 * 109.47107 * 90.30772 * 19 17 15 21 21 H 1.48493 * 109.47397 * 210.30703 * 19 17 15 22 22 H 1.48499 * 109.46977 * 330.31101 * 19 17 15 23 23 C 1.39671 * 119.70118 * 0.25606 * 8 7 6 24 24 C 1.37923 * 119.84522 * 359.48340 * 23 8 7 25 25 H 1.09004 * 109.46998 * 299.99762 * 1 2 3 26 26 H 1.08996 * 109.47110 * 59.99398 * 1 2 3 27 27 H 1.09000 * 109.47645 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47150 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47513 * 300.00356 * 3 2 1 30 30 H 1.09002 * 109.46784 * 60.00936 * 3 2 1 31 31 H 1.00905 * 110.99193 * 56.04678 * 4 2 1 32 32 H 1.00895 * 111.00509 * 180.02562 * 4 2 1 33 33 H 1.07999 * 119.92114 * 0.02562 * 6 5 2 34 34 H 1.07993 * 120.08070 * 180.02562 * 7 6 5 35 35 H 1.08006 * 119.24931 * 180.02562 * 11 10 9 36 36 H 1.08004 * 120.10305 * 179.97438 * 12 11 10 37 37 H 1.08005 * 120.79843 * 179.97438 * 13 12 11 38 38 H 0.96993 * 120.00242 * 180.02562 * 18 17 15 39 39 H 1.07999 * 120.07889 * 179.72618 * 23 8 7 40 40 H 1.07997 * 119.92661 * 180.25051 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0323 -0.7105 1.2304 6 6 3.2420 -1.3818 1.1926 7 6 3.7080 -2.0337 2.3151 8 6 2.9557 -2.0157 3.4918 9 6 3.4484 -2.7126 4.6988 10 7 3.9725 -3.9260 4.5958 11 6 4.4224 -4.5779 5.6485 12 6 4.3695 -4.0253 6.9214 13 6 3.8404 -2.7754 7.0989 14 6 3.3556 -2.0849 5.9676 15 6 2.7960 -0.7983 6.0950 16 1 2.8646 -0.0962 5.2771 17 6 2.1506 -0.4296 7.2822 18 7 1.9219 0.8324 7.5374 19 14 1.6163 -1.7406 8.5008 20 1 2.7112 -1.9887 9.4728 21 1 0.4058 -1.2784 9.2262 22 1 1.3071 -2.9971 7.7722 23 6 1.7330 -1.3412 3.5212 24 6 1.2816 -0.6890 2.3929 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6768 1.9562 0.8901 31 1 1.6441 -0.2739 -2.0372 32 1 3.0282 -0.7064 -1.2226 33 1 3.8228 -1.3946 0.2822 34 1 4.6522 -2.5569 2.2844 35 1 4.8421 -5.5646 5.5186 36 1 4.7445 -4.5801 7.7688 37 1 3.7908 -2.3303 8.0817 38 1 1.4754 1.0877 8.3597 39 1 1.1443 -1.3271 4.4266 40 1 0.3383 -0.1636 2.4154 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245908764.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:02 Heat of formation + Delta-G solvation = 43.285698 kcal Electronic energy + Delta-G solvation = -21579.050758 eV Core-core repulsion = 18550.569476 eV Total energy + Delta-G solvation = -3028.481281 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.46384 -38.47980 -36.10122 -34.12639 -31.60559 -31.40663 -30.65718 -29.13796 -28.25719 -27.20012 -25.62557 -23.32997 -22.04917 -21.29281 -20.68214 -19.13536 -17.59299 -17.00391 -16.06758 -15.48545 -15.08760 -14.64255 -14.42025 -14.05823 -13.92564 -13.52121 -13.28620 -13.12848 -12.88280 -12.61296 -12.46227 -12.17793 -12.12896 -11.75919 -11.72091 -11.52672 -11.34763 -11.15389 -10.89553 -10.53733 -10.30848 -10.15265 -9.91895 -9.58008 -8.76695 -8.62258 -8.28018 -8.21338 -8.07602 -7.39400 -7.16158 -4.65280 1.74499 2.19020 2.44842 2.68520 2.95556 3.07017 3.16611 3.78848 4.34946 4.46108 4.64101 4.85623 5.11242 5.21808 5.30603 5.43751 5.58451 5.63913 5.65523 5.76433 5.89375 5.94171 5.95104 6.10323 6.11377 6.19925 6.24497 6.29735 6.44061 6.53018 6.64785 6.76753 6.80977 6.90469 7.10081 7.22566 7.28722 7.32292 7.44997 7.48312 7.57683 7.72139 7.77450 8.12234 8.35773 8.52649 9.35014 9.82886 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.019204 B = 0.005483 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.696706 B = 5105.245679 C = 6153.051289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.157 3.843 3 C -0.176 4.176 4 N -0.837 5.837 5 C -0.087 4.087 6 C -0.115 4.115 7 C -0.106 4.106 8 C 0.015 3.985 9 C 0.035 3.965 10 N -0.442 5.442 11 C -0.042 4.042 12 C -0.121 4.121 13 C -0.212 4.212 14 C 0.061 3.939 15 C -0.421 4.421 16 H 0.104 0.896 17 C 0.083 3.917 18 N -0.789 5.789 19 Si 0.910 3.090 20 H -0.266 1.266 21 H -0.287 1.287 22 H -0.246 1.246 23 C -0.087 4.087 24 C -0.124 4.124 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.336 0.664 32 H 0.340 0.660 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.126 0.874 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.289 0.711 39 H 0.132 0.868 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.770 0.696 -8.776 8.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.064 3.936 3 C -0.235 4.235 4 N -0.367 5.367 5 C -0.088 4.088 6 C -0.134 4.134 7 C -0.125 4.125 8 C 0.014 3.986 9 C -0.106 4.106 10 N -0.149 5.149 11 C -0.200 4.200 12 C -0.141 4.141 13 C -0.238 4.238 14 C 0.056 3.944 15 C -0.449 4.449 16 H 0.121 0.879 17 C -0.139 4.139 18 N -0.412 5.412 19 Si 0.737 3.263 20 H -0.193 1.193 21 H -0.214 1.214 22 H -0.170 1.170 23 C -0.106 4.106 24 C -0.142 4.142 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.148 0.852 32 H 0.154 0.846 33 H 0.128 0.872 34 H 0.134 0.866 35 H 0.144 0.856 36 H 0.122 0.878 37 H 0.130 0.870 38 H 0.100 0.900 39 H 0.150 0.850 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.186 -0.103 -9.149 9.407 hybrid contribution 0.314 0.910 1.448 1.739 sum -1.872 0.807 -7.701 7.966 Atomic orbital electron populations 1.21879 0.93638 1.02658 1.01392 1.19544 0.94898 0.90324 0.88789 1.22618 1.01472 0.97271 1.02121 1.58955 1.13923 1.60114 1.03719 1.19469 0.95493 1.00039 0.93782 1.20586 0.96085 0.99217 0.97492 1.21168 0.99738 0.99262 0.92343 1.18377 0.93301 0.95414 0.91546 1.19537 1.07377 0.91718 0.91928 1.67085 1.06557 1.07789 1.33511 1.21690 1.09474 1.00353 0.88458 1.21361 0.99128 0.95846 0.97734 1.21206 1.06602 0.97224 0.98732 1.18441 0.91389 0.93246 0.91330 1.19540 1.28346 0.96526 1.00453 0.87851 1.26238 0.93707 0.96152 0.97757 1.69639 1.29347 1.17642 1.24540 0.86361 0.77852 0.82089 0.80025 1.19253 1.21388 1.16958 1.21388 0.95409 0.95836 0.97925 1.20838 0.99742 1.01050 0.92593 0.91661 0.93116 0.91593 0.92574 0.92942 0.91626 0.85152 0.84580 0.87207 0.86639 0.85643 0.87826 0.87048 0.89980 0.85008 0.86615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.03 37.15 0.30 -1.33 16 2 C 0.16 2.01 1.08 -132.75 -0.14 1.86 16 3 C -0.18 -2.05 8.74 37.16 0.32 -1.72 16 4 N -0.84 -9.52 8.57 -0.19 0.00 -9.52 16 5 C -0.09 -1.42 4.84 -104.50 -0.51 -1.93 16 6 C -0.12 -1.97 9.27 -39.64 -0.37 -2.34 16 7 C -0.11 -2.11 9.66 -39.16 -0.38 -2.48 16 8 C 0.01 0.32 5.26 -104.91 -0.55 -0.23 16 9 C 0.04 0.85 6.43 -82.24 -0.53 0.33 16 10 N -0.44 -10.49 10.15 -9.17 -0.09 -10.58 16 11 C -0.04 -0.90 11.16 -17.36 -0.19 -1.10 16 12 C -0.12 -2.58 10.03 -39.84 -0.40 -2.97 16 13 C -0.21 -4.99 7.31 -38.98 -0.28 -5.27 16 14 C 0.06 1.52 5.12 -106.42 -0.54 0.97 16 15 C -0.42 -10.65 7.22 -37.90 -0.27 -10.92 16 16 H 0.10 2.76 6.71 -52.48 -0.35 2.41 16 17 C 0.08 2.02 5.44 -17.32 -0.09 1.93 16 18 N -0.79 -19.53 13.92 55.55 0.77 -18.76 16 19 Si 0.91 19.64 24.53 -169.99 -4.17 15.47 16 20 H -0.27 -5.57 6.46 56.52 0.37 -5.20 16 21 H -0.29 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.25 -5.55 6.99 56.52 0.40 -5.16 16 23 C -0.09 -1.81 7.87 -39.16 -0.31 -2.11 16 24 C -0.12 -2.21 9.12 -39.64 -0.36 -2.57 16 25 H 0.06 0.76 6.49 -51.93 -0.34 0.42 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.34 3.08 8.98 -39.29 -0.35 2.72 16 32 H 0.34 3.62 7.18 -39.29 -0.28 3.34 16 33 H 0.11 1.59 6.35 -52.49 -0.33 1.25 16 34 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 35 H 0.13 2.33 8.06 -52.48 -0.42 1.91 16 36 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 37 H 0.11 2.55 4.52 -52.48 -0.24 2.31 16 38 H 0.29 6.48 8.29 -40.82 -0.34 6.14 16 39 H 0.13 2.88 6.75 -52.49 -0.35 2.52 16 40 H 0.12 1.81 6.14 -52.49 -0.32 1.49 16 LS Contribution 320.62 15.07 4.83 4.83 Total: -1.00 -27.24 320.62 -8.10 -35.34 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -5.13 Total: 13.11 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: -4.31 Total: -29.89 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.68 Total: -38.86 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.17 Total: 15.47 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.24 -8.10 -35.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245908764.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.628 kcal (2) G-P(sol) polarization free energy of solvation -27.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds