Wall clock time and date at job start Tue Mar 31 2020 05:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47335 * 2 1 4 4 N 1.46902 * 109.47225 * 239.99918 * 2 1 3 5 5 C 1.50701 * 109.47034 * 120.00197 * 2 1 3 6 6 C 1.38405 * 119.84723 * 149.99357 * 5 2 1 7 7 C 1.37918 * 120.15500 * 179.97438 * 6 5 2 8 8 C 1.39673 * 119.84173 * 0.02562 * 7 6 5 9 9 C 1.47822 * 120.14965 * 179.97438 * 8 7 6 10 10 N 1.32580 * 119.98765 * 316.27161 * 9 8 7 11 11 C 1.31741 * 121.72015 * 179.97438 * 10 9 8 12 12 C 1.38870 * 121.50650 * 0.02562 * 11 10 9 13 13 C 1.36886 * 119.79600 * 359.97438 * 12 11 10 14 14 C 1.41121 * 118.39778 * 0.26762 * 13 12 11 15 15 C 1.40881 * 120.71973 * 179.72416 * 14 13 12 16 16 H 1.08007 * 119.99910 * 150.47246 * 15 14 13 17 17 C 1.40070 * 120.00434 * 330.47698 * 15 14 13 18 18 N 1.30767 * 120.00494 * 163.31467 * 17 15 14 19 19 Si 1.86803 * 119.99735 * 343.30979 * 17 15 14 20 20 H 1.48502 * 109.47107 * 90.30772 * 19 17 15 21 21 H 1.48493 * 109.47397 * 210.30703 * 19 17 15 22 22 H 1.48499 * 109.46977 * 330.31101 * 19 17 15 23 23 C 1.39671 * 119.70118 * 0.25606 * 8 7 6 24 24 C 1.37923 * 119.84522 * 359.48340 * 23 8 7 25 25 H 1.09004 * 109.46998 * 299.99762 * 1 2 3 26 26 H 1.08996 * 109.47110 * 59.99398 * 1 2 3 27 27 H 1.09000 * 109.47645 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47150 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47513 * 300.00356 * 3 2 1 30 30 H 1.09002 * 109.46784 * 60.00936 * 3 2 1 31 31 H 1.00905 * 110.99193 * 56.04678 * 4 2 1 32 32 H 1.00895 * 111.00509 * 180.02562 * 4 2 1 33 33 H 1.07999 * 119.92114 * 0.02562 * 6 5 2 34 34 H 1.07993 * 120.08070 * 180.02562 * 7 6 5 35 35 H 1.08006 * 119.24931 * 180.02562 * 11 10 9 36 36 H 1.08004 * 120.10305 * 179.97438 * 12 11 10 37 37 H 1.08005 * 120.79843 * 179.97438 * 13 12 11 38 38 H 0.96993 * 120.00242 * 180.02562 * 18 17 15 39 39 H 1.07999 * 120.07889 * 179.72618 * 23 8 7 40 40 H 1.07997 * 119.92661 * 180.25051 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0323 -0.7105 1.2304 6 6 3.2420 -1.3818 1.1926 7 6 3.7080 -2.0337 2.3151 8 6 2.9557 -2.0157 3.4918 9 6 3.4484 -2.7126 4.6988 10 7 3.9725 -3.9260 4.5958 11 6 4.4224 -4.5779 5.6485 12 6 4.3695 -4.0253 6.9214 13 6 3.8404 -2.7754 7.0989 14 6 3.3556 -2.0849 5.9676 15 6 2.7960 -0.7983 6.0950 16 1 2.8646 -0.0962 5.2771 17 6 2.1506 -0.4296 7.2822 18 7 1.9219 0.8324 7.5374 19 14 1.6163 -1.7406 8.5008 20 1 2.7112 -1.9887 9.4728 21 1 0.4058 -1.2784 9.2262 22 1 1.3071 -2.9971 7.7722 23 6 1.7330 -1.3412 3.5212 24 6 1.2816 -0.6890 2.3929 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6768 1.9562 0.8901 31 1 1.6441 -0.2739 -2.0372 32 1 3.0282 -0.7064 -1.2226 33 1 3.8228 -1.3946 0.2822 34 1 4.6522 -2.5569 2.2844 35 1 4.8421 -5.5646 5.5186 36 1 4.7445 -4.5801 7.7688 37 1 3.7908 -2.3303 8.0817 38 1 1.4754 1.0877 8.3597 39 1 1.1443 -1.3271 4.4266 40 1 0.3383 -0.1636 2.4154 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245908764.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:02 Heat of formation + Delta-G solvation = 26.895823 kcal Electronic energy + Delta-G solvation = -21579.761476 eV Core-core repulsion = 18550.569476 eV Total energy + Delta-G solvation = -3029.192000 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.98676 -40.02513 -37.36617 -35.95147 -33.31254 -33.09475 -32.04059 -30.38935 -29.66029 -28.14510 -27.40732 -24.88949 -23.70118 -22.85372 -22.26574 -20.40174 -19.44425 -18.44780 -17.58400 -16.98159 -16.62242 -16.07827 -15.68662 -15.58210 -15.35206 -15.15032 -14.72276 -14.45722 -14.23021 -14.13317 -13.96130 -13.86963 -13.35396 -13.21258 -13.04483 -12.88886 -12.71204 -12.65880 -12.20412 -12.07980 -11.87736 -11.63707 -11.48386 -11.37066 -10.40459 -10.05692 -9.93185 -9.65506 -9.58141 -9.01123 -8.98181 -6.53303 0.13258 0.67335 0.69611 0.98488 1.20408 1.34712 1.42274 2.03343 2.57583 2.95789 3.50545 3.63050 3.71738 3.85271 4.03004 4.18345 4.22252 4.27060 4.29839 4.43184 4.56028 4.63466 4.70601 4.75217 4.77628 4.90368 4.96542 5.01178 5.03408 5.10938 5.21931 5.28993 5.31637 5.37232 5.54021 5.58811 5.72770 5.78805 5.93745 5.97346 6.18577 6.26258 6.32986 6.55025 6.64556 6.70681 7.55907 8.05642 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.019204 B = 0.005483 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.696706 B = 5105.245679 C = 6153.051289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.160 3.840 3 C -0.172 4.172 4 N -0.840 5.840 5 C -0.078 4.078 6 C -0.111 4.111 7 C -0.116 4.116 8 C -0.020 4.020 9 C 0.021 3.979 10 N -0.462 5.462 11 C -0.037 4.037 12 C -0.120 4.120 13 C -0.226 4.226 14 C 0.041 3.959 15 C -0.441 4.441 16 H 0.072 0.928 17 C 0.054 3.946 18 N -0.824 5.824 19 Si 0.958 3.042 20 H -0.250 1.250 21 H -0.272 1.272 22 H -0.264 1.264 23 C -0.103 4.103 24 C -0.126 4.126 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.353 0.647 32 H 0.345 0.655 33 H 0.141 0.859 34 H 0.114 0.886 35 H 0.162 0.838 36 H 0.146 0.854 37 H 0.116 0.884 38 H 0.299 0.701 39 H 0.109 0.891 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.652 -0.085 -9.955 10.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.067 3.933 3 C -0.231 4.231 4 N -0.373 5.373 5 C -0.079 4.079 6 C -0.129 4.129 7 C -0.135 4.135 8 C -0.021 4.021 9 C -0.118 4.118 10 N -0.170 5.170 11 C -0.195 4.195 12 C -0.140 4.140 13 C -0.251 4.251 14 C 0.036 3.964 15 C -0.470 4.470 16 H 0.091 0.909 17 C -0.164 4.164 18 N -0.448 5.448 19 Si 0.782 3.218 20 H -0.176 1.176 21 H -0.198 1.198 22 H -0.189 1.189 23 C -0.122 4.122 24 C -0.144 4.144 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.167 0.833 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.132 0.868 35 H 0.180 0.820 36 H 0.164 0.836 37 H 0.134 0.866 38 H 0.109 0.891 39 H 0.127 0.873 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.067 -0.866 -10.343 10.583 hybrid contribution 0.343 1.056 1.648 1.987 sum -1.724 0.190 -8.695 8.866 Atomic orbital electron populations 1.21877 0.92746 1.02287 1.02634 1.19515 0.95552 0.90545 0.87673 1.22581 1.01326 0.96341 1.02879 1.58883 1.14453 1.60153 1.03810 1.19934 0.94622 0.98564 0.94738 1.20913 0.96446 0.97973 0.97613 1.21248 0.99636 0.99990 0.92584 1.18510 0.94457 0.97096 0.92011 1.19928 1.07152 0.92067 0.92683 1.67183 1.07452 1.07735 1.34597 1.22437 1.07471 1.01366 0.88259 1.21775 0.97944 0.95155 0.99098 1.21427 1.06888 0.98286 0.98498 1.18654 0.91934 0.93397 0.92437 1.19343 1.30605 0.96689 1.00361 0.90949 1.26761 0.93350 0.97574 0.98685 1.69648 1.30815 1.18674 1.25693 0.85642 0.78491 0.79200 0.78503 1.17560 1.19778 1.18881 1.21293 0.95450 0.97219 0.98260 1.21077 1.00679 1.00432 0.92254 0.91814 0.90581 0.92759 0.92818 0.90272 0.92818 0.83280 0.84018 0.84117 0.86835 0.82049 0.83631 0.86601 0.89051 0.87337 0.84743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.03 71.98 0.58 -2.35 16 2 C 0.16 3.71 1.08 2.78 0.00 3.72 16 3 C -0.17 -3.58 8.74 71.98 0.63 -2.95 16 4 N -0.84 -16.50 8.57 -154.53 -1.32 -17.82 16 5 C -0.08 -2.47 4.84 -19.79 -0.10 -2.57 16 6 C -0.11 -3.70 9.27 22.23 0.21 -3.49 16 7 C -0.12 -4.67 9.66 22.54 0.22 -4.45 16 8 C -0.02 -0.92 5.26 -20.05 -0.11 -1.02 16 9 C 0.02 1.07 6.43 42.47 0.27 1.34 16 10 N -0.46 -21.91 10.15 -182.92 -1.86 -23.76 16 11 C -0.04 -1.53 11.16 84.86 0.95 -0.58 16 12 C -0.12 -4.87 10.03 22.10 0.22 -4.65 16 13 C -0.23 -10.52 7.31 22.66 0.17 -10.36 16 14 C 0.04 2.09 5.12 -21.03 -0.11 1.98 16 15 C -0.44 -23.62 7.22 23.36 0.17 -23.45 16 16 H 0.07 4.20 6.71 -2.91 -0.02 4.18 16 17 C 0.05 2.74 5.44 85.30 0.46 3.21 16 18 N -0.82 -42.25 13.92 21.85 0.30 -41.95 16 19 Si 0.96 40.73 24.53 68.60 1.68 42.41 16 20 H -0.25 -9.91 6.46 99.48 0.64 -9.27 16 21 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 22 H -0.26 -11.91 6.99 99.48 0.70 -11.22 16 23 C -0.10 -4.54 7.87 22.54 0.18 -4.37 16 24 C -0.13 -4.58 9.12 22.23 0.20 -4.38 16 25 H 0.06 1.37 6.49 -2.38 -0.02 1.35 16 26 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.35 5.14 8.98 -89.69 -0.81 4.34 16 32 H 0.35 6.23 7.18 -89.70 -0.64 5.59 16 33 H 0.14 3.74 6.35 -2.91 -0.02 3.72 16 34 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 35 H 0.16 5.43 8.06 -2.91 -0.02 5.41 16 36 H 0.15 4.62 8.06 -2.91 -0.02 4.60 16 37 H 0.12 5.21 4.52 -2.91 -0.01 5.20 16 38 H 0.30 13.68 8.29 -92.71 -0.77 12.91 16 39 H 0.11 5.17 6.75 -2.91 -0.02 5.15 16 40 H 0.13 4.24 6.14 -2.91 -0.02 4.23 16 Total: -1.00 -61.12 320.62 2.31 -58.81 By element: Atomic # 1 Polarization: 37.13 SS G_CDS: -0.44 Total: 36.69 kcal Atomic # 6 Polarization: -58.32 SS G_CDS: 3.95 Total: -54.38 kcal Atomic # 7 Polarization: -80.66 SS G_CDS: -2.88 Total: -83.53 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 1.68 Total: 42.41 kcal Total: -61.12 2.31 -58.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245908764.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.705 kcal (2) G-P(sol) polarization free energy of solvation -61.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds