Wall clock time and date at job start Tue Mar 31 2020 05:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47194 * 2 1 4 4 N 1.46898 * 109.46721 * 239.99752 * 2 1 3 5 5 C 1.50697 * 109.47274 * 119.99967 * 2 1 3 6 6 C 1.38318 * 119.88200 * 149.99729 * 5 2 1 7 7 C 1.38017 * 120.12168 * 179.97438 * 6 5 2 8 8 C 1.39324 * 119.88091 * 0.02996 * 7 6 5 9 9 C 1.48412 * 120.12277 * 179.97438 * 8 7 6 10 10 C 1.39710 * 120.40675 * 359.96998 * 9 8 7 11 11 N 1.31923 * 121.14801 * 180.02562 * 10 9 8 12 12 C 1.31517 * 122.11950 * 359.70116 * 11 10 9 13 13 C 1.40775 * 120.66415 * 0.58942 * 12 11 10 14 14 C 1.41442 * 120.60044 * 179.69495 * 13 12 11 15 15 H 1.08005 * 119.99665 * 155.38371 * 14 13 12 16 16 C 1.39930 * 120.00569 * 335.39183 * 14 13 12 17 17 N 1.30838 * 119.99667 * 342.51799 * 16 14 13 18 18 Si 1.86794 * 120.00409 * 162.51968 * 16 14 13 19 19 H 1.48501 * 109.47132 * 94.67501 * 18 16 14 20 20 H 1.48503 * 109.47269 * 214.67561 * 18 16 14 21 21 H 1.48504 * 109.47019 * 334.67448 * 18 16 14 22 22 C 1.39135 * 120.41128 * 179.97438 * 9 8 7 23 23 C 1.39330 * 119.75886 * 0.24160 * 8 7 6 24 24 C 1.38017 * 119.87852 * 359.48021 * 23 8 7 25 25 H 1.09002 * 109.46726 * 300.00293 * 1 2 3 26 26 H 1.09000 * 109.47154 * 59.99847 * 1 2 3 27 27 H 1.08993 * 109.47286 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47057 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46692 * 300.00152 * 3 2 1 30 30 H 1.08997 * 109.47168 * 59.99899 * 3 2 1 31 31 H 1.00901 * 111.00015 * 176.04463 * 4 2 1 32 32 H 1.00900 * 111.00251 * 300.00247 * 4 2 1 33 33 H 1.08000 * 119.93779 * 359.97438 * 6 5 2 34 34 H 1.08004 * 120.05653 * 180.02562 * 7 6 5 35 35 H 1.07995 * 119.42816 * 0.05070 * 10 9 8 36 36 H 1.07999 * 119.66609 * 180.31637 * 12 11 10 37 37 H 0.97001 * 119.99693 * 179.97438 * 17 16 14 38 38 H 1.07996 * 120.95443 * 359.95950 * 22 9 8 39 39 H 1.08001 * 120.05865 * 179.72575 * 23 8 7 40 40 H 1.08000 * 119.94553 * 180.24741 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0324 -0.7104 1.2304 6 6 3.2413 -1.3815 1.1934 7 6 3.7064 -2.0333 2.3176 8 6 2.9555 -2.0150 3.4910 9 6 3.4502 -2.7146 4.7028 10 6 4.6694 -3.3963 4.6775 11 7 5.1228 -4.0235 5.7459 12 6 4.4614 -4.0361 6.8826 13 6 3.2208 -3.3809 6.9987 14 6 2.5077 -3.4008 8.2200 15 1 1.8007 -2.6159 8.4453 16 6 2.7180 -4.4371 9.1365 17 7 3.2917 -5.5471 8.7483 18 14 2.1797 -4.2359 10.9138 19 1 0.8267 -4.8218 11.0906 20 1 3.1416 -4.9337 11.8044 21 1 2.1430 -2.7921 11.2594 22 6 2.7054 -2.6998 5.8780 23 6 1.7357 -1.3423 3.5211 24 6 1.2829 -0.6889 2.3928 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 3.0262 -0.6502 -1.2559 32 1 1.6961 -1.6480 -1.2227 33 1 3.8224 -1.3954 0.2832 34 1 4.6507 -2.5566 2.2876 35 1 5.2511 -3.4097 3.7677 36 1 4.8722 -4.5580 7.7343 37 1 3.4379 -6.2653 9.3837 38 1 1.7595 -2.1813 5.9296 39 1 1.1476 -1.3288 4.4268 40 1 0.3395 -0.1638 2.4161 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245909022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:20 Heat of formation + Delta-G solvation = 36.187112 kcal Electronic energy + Delta-G solvation = -20825.697513 eV Core-core repulsion = 17796.908414 eV Total energy + Delta-G solvation = -3028.789099 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.82482 -38.36099 -36.39011 -34.07226 -31.92502 -31.31984 -30.45616 -29.46210 -27.83094 -27.41920 -25.72350 -23.33732 -22.71705 -20.93762 -20.74505 -19.42342 -17.69508 -16.68363 -15.93595 -15.57886 -15.53327 -15.05204 -14.79441 -14.35345 -13.80085 -13.71211 -13.32104 -13.17749 -13.06358 -12.56925 -12.24334 -12.13224 -12.01322 -11.93518 -11.58480 -11.55715 -11.30435 -11.18650 -11.07182 -10.85054 -10.82059 -10.46936 -10.13586 -9.46177 -9.24095 -8.90642 -8.68967 -8.17565 -7.88913 -7.21915 -6.97929 -4.57709 1.28789 1.66510 2.62914 2.86960 2.98662 3.02551 3.11192 3.79825 4.11045 4.35665 4.56325 4.69990 4.85374 4.99683 5.12485 5.20251 5.35156 5.55874 5.60065 5.63937 5.64625 5.71506 5.79829 5.82893 5.98510 6.06622 6.10154 6.13856 6.23192 6.41214 6.58576 6.65307 6.66070 6.69118 6.98088 7.04469 7.08445 7.15251 7.28768 7.29652 7.52660 7.64854 7.96474 8.21860 8.59011 8.62671 9.61467 9.99138 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.031773 B = 0.003413 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.029034 B = 8201.924220 C = 8822.118853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.156 3.844 3 C -0.134 4.134 4 N -0.837 5.837 5 C -0.133 4.133 6 C -0.121 4.121 7 C -0.116 4.116 8 C -0.008 4.008 9 C -0.086 4.086 10 C -0.025 4.025 11 N -0.478 5.478 12 C 0.050 3.950 13 C 0.062 3.938 14 C -0.452 4.452 15 H 0.082 0.918 16 C 0.075 3.925 17 N -0.788 5.788 18 Si 0.914 3.086 19 H -0.269 1.269 20 H -0.273 1.273 21 H -0.259 1.259 22 C -0.181 4.181 23 C -0.116 4.116 24 C -0.111 4.111 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.340 0.660 32 H 0.342 0.658 33 H 0.113 0.887 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.151 0.849 37 H 0.286 0.714 38 H 0.106 0.894 39 H 0.125 0.875 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.810 8.166 -11.327 14.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.063 3.937 3 C -0.192 4.192 4 N -0.366 5.366 5 C -0.135 4.135 6 C -0.139 4.139 7 C -0.133 4.133 8 C -0.009 4.009 9 C -0.088 4.088 10 C -0.180 4.180 11 N -0.185 5.185 12 C -0.114 4.114 13 C 0.058 3.942 14 C -0.481 4.481 15 H 0.100 0.900 16 C -0.144 4.144 17 N -0.413 5.413 18 Si 0.737 3.263 19 H -0.194 1.194 20 H -0.198 1.198 21 H -0.183 1.183 22 C -0.206 4.206 23 C -0.134 4.134 24 C -0.130 4.130 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.153 0.847 32 H 0.155 0.845 33 H 0.131 0.869 34 H 0.142 0.858 35 H 0.138 0.862 36 H 0.168 0.832 37 H 0.097 0.903 38 H 0.124 0.876 39 H 0.143 0.857 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.363 8.053 -11.768 14.651 hybrid contribution -0.569 -0.353 1.617 1.750 sum -3.932 7.700 -10.150 13.333 Atomic orbital electron populations 1.21866 0.93503 1.02175 1.01972 1.19653 0.95111 0.93555 0.85408 1.21811 1.01062 0.94312 1.01996 1.59075 1.16247 1.21444 1.39866 1.20623 0.95825 1.00507 0.96538 1.20745 0.95879 0.99148 0.98144 1.21207 1.00053 0.99781 0.92307 1.19031 0.93549 0.95223 0.93126 1.19322 0.96859 1.00068 0.92564 1.21851 0.95648 1.03258 0.97229 1.67147 1.35207 1.16118 1.00005 1.23102 0.92174 1.01710 0.94403 1.18483 0.92347 0.90812 0.92557 1.19532 1.20927 1.07732 0.99948 0.89989 1.25984 0.93261 0.93905 1.01295 1.69769 1.31549 1.03221 1.36757 0.86204 0.79172 0.79984 0.80908 1.19400 1.19767 1.18261 1.21409 0.99691 1.07252 0.92222 1.21332 0.96025 0.97566 0.98441 1.20951 0.99614 0.99891 0.92502 0.91858 0.91875 0.92548 0.92720 0.91847 0.92040 0.84675 0.84488 0.86944 0.85808 0.86167 0.83158 0.90288 0.87611 0.85713 0.86189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.07 37.16 0.30 -1.02 16 2 C 0.16 1.62 1.08 -132.75 -0.14 1.48 16 3 C -0.13 -1.31 8.72 37.16 0.32 -0.99 16 4 N -0.84 -7.96 8.49 -0.19 0.00 -7.97 16 5 C -0.13 -1.71 4.80 -104.56 -0.50 -2.21 16 6 C -0.12 -1.62 9.27 -39.63 -0.37 -1.99 16 7 C -0.12 -1.86 9.44 -39.26 -0.37 -2.23 16 8 C -0.01 -0.16 5.88 -104.90 -0.62 -0.77 16 9 C -0.09 -1.92 5.88 -104.82 -0.62 -2.53 16 10 C -0.03 -0.59 10.60 -16.96 -0.18 -0.77 16 11 N -0.48 -12.25 10.32 -12.28 -0.13 -12.37 16 12 C 0.05 1.32 9.89 -16.73 -0.17 1.16 16 13 C 0.06 1.63 5.58 -106.71 -0.60 1.03 16 14 C -0.45 -11.44 9.08 -37.73 -0.34 -11.79 16 15 H 0.08 1.97 7.90 -52.48 -0.41 1.56 16 16 C 0.07 1.79 5.15 -17.34 -0.09 1.70 16 17 N -0.79 -19.65 10.97 55.55 0.61 -19.04 16 18 Si 0.91 17.74 29.59 -169.99 -5.03 12.71 16 19 H -0.27 -5.16 7.11 56.52 0.40 -4.75 16 20 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 21 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 22 C -0.18 -4.30 9.30 -38.24 -0.36 -4.66 16 23 C -0.12 -1.93 9.43 -39.26 -0.37 -2.30 16 24 C -0.11 -1.55 9.13 -39.63 -0.36 -1.91 16 25 H 0.06 0.57 6.50 -51.93 -0.34 0.23 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.34 2.96 7.36 -39.29 -0.29 2.67 16 32 H 0.34 3.17 8.99 -39.29 -0.35 2.82 16 33 H 0.11 1.22 6.46 -52.49 -0.34 0.88 16 34 H 0.12 1.89 6.22 -52.48 -0.33 1.57 16 35 H 0.12 2.44 6.20 -52.49 -0.33 2.12 16 36 H 0.15 4.06 6.16 -52.49 -0.32 3.73 16 37 H 0.29 6.44 8.30 -40.82 -0.34 6.10 16 38 H 0.11 2.31 6.31 -52.49 -0.33 1.98 16 39 H 0.13 2.05 6.26 -52.49 -0.33 1.72 16 40 H 0.12 1.40 6.15 -52.49 -0.32 1.08 16 LS Contribution 325.50 15.07 4.91 4.91 Total: -1.00 -27.49 325.50 -9.04 -36.53 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -4.94 Total: 13.04 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: -4.45 Total: -27.81 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.48 Total: -39.38 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.71 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.49 -9.04 -36.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245909022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.715 kcal (2) G-P(sol) polarization free energy of solvation -27.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds