Wall clock time and date at job start Tue Mar 31 2020 05:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47394 * 2 1 4 4 N 1.46903 * 109.47297 * 239.99591 * 2 1 3 5 5 C 1.50703 * 109.47002 * 120.00030 * 2 1 3 6 6 C 1.38324 * 119.87876 * 149.99812 * 5 2 1 7 7 C 1.38017 * 120.12139 * 179.97438 * 6 5 2 8 8 C 1.39346 * 119.87624 * 359.97438 * 7 6 5 9 9 C 1.48387 * 120.11904 * 179.97438 * 8 7 6 10 10 C 1.40036 * 120.82256 * 0.02562 * 9 8 7 11 11 C 1.38511 * 119.42214 * 180.02562 * 10 9 8 12 12 N 1.31478 * 121.14587 * 0.03008 * 11 10 9 13 13 C 1.33647 * 121.79298 * 359.96742 * 12 11 10 14 14 C 1.41426 * 119.77696 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99912 * 187.07025 * 14 13 12 16 16 C 1.40033 * 119.99947 * 7.07167 * 14 13 12 17 17 N 1.30741 * 120.00144 * 182.56910 * 16 14 13 18 18 Si 1.86809 * 120.00169 * 2.56807 * 16 14 13 19 19 H 1.48499 * 109.47093 * 179.97438 * 18 16 14 20 20 H 1.48495 * 109.46992 * 300.00230 * 18 16 14 21 21 H 1.48506 * 109.46797 * 59.99784 * 18 16 14 22 22 C 1.39306 * 120.81975 * 180.27908 * 9 8 7 23 23 C 1.39349 * 119.75667 * 0.25241 * 8 7 6 24 24 C 1.38014 * 119.87446 * 359.51636 * 23 8 7 25 25 H 1.08999 * 109.47521 * 300.00144 * 1 2 3 26 26 H 1.09002 * 109.46758 * 60.00397 * 1 2 3 27 27 H 1.08998 * 109.47033 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47229 * 179.97438 * 3 2 1 29 29 H 1.09007 * 109.47325 * 300.00093 * 3 2 1 30 30 H 1.09004 * 109.47329 * 59.99611 * 3 2 1 31 31 H 1.00899 * 110.99957 * 179.97438 * 4 2 1 32 32 H 1.00901 * 111.00078 * 303.95788 * 4 2 1 33 33 H 1.07992 * 119.93769 * 359.97438 * 6 5 2 34 34 H 1.07996 * 120.05989 * 180.02562 * 7 6 5 35 35 H 1.07993 * 120.28840 * 0.04246 * 10 9 8 36 36 H 1.07996 * 119.42543 * 179.97438 * 11 10 9 37 37 H 0.96999 * 119.99741 * 354.84870 * 17 16 14 38 38 H 1.08005 * 120.58400 * 359.97438 * 22 9 8 39 39 H 1.08000 * 120.05454 * 179.73814 * 23 8 7 40 40 H 1.08000 * 119.93510 * 180.23226 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0323 -0.7104 1.2305 6 6 3.2413 -1.3815 1.1934 7 6 3.7063 -2.0334 2.3176 8 6 2.9558 -2.0142 3.4915 9 6 3.4504 -2.7137 4.7030 10 6 4.6711 -3.3995 4.6875 11 6 5.1048 -4.0430 5.8349 12 7 4.3899 -4.0214 6.9381 13 6 3.2185 -3.3815 7.0056 14 6 2.4843 -3.3863 8.2144 15 1 1.4881 -2.9702 8.2427 16 6 3.0490 -3.9306 9.3744 17 7 2.3519 -3.9807 10.4794 18 14 4.7984 -4.5851 9.3433 19 1 5.1570 -5.1031 10.6881 20 1 4.8990 -5.6815 8.3469 21 1 5.7299 -3.4903 8.9704 22 6 2.7092 -2.7087 5.8826 23 6 1.7363 -1.3405 3.5217 24 6 1.2832 -0.6880 2.3931 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.0284 -0.7057 -1.2229 32 1 1.6442 -1.6274 -1.2558 33 1 3.8223 -1.3955 0.2833 34 1 4.6506 -2.5567 2.2877 35 1 5.2694 -3.4264 3.7888 36 1 6.0461 -4.5723 5.8228 37 1 1.4720 -3.5741 10.5165 38 1 1.7611 -2.1940 5.9337 39 1 1.1487 -1.3260 4.4277 40 1 0.3400 -0.1624 2.4165 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245909749.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:01 Heat of formation + Delta-G solvation = 30.866615 kcal Electronic energy + Delta-G solvation = -20918.827091 eV Core-core repulsion = 17889.807278 eV Total energy + Delta-G solvation = -3029.019813 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.97764 -38.64139 -36.58329 -33.89269 -32.30529 -31.42481 -30.47007 -29.56329 -28.49462 -27.50800 -25.65284 -23.68964 -22.66051 -21.27151 -20.64127 -19.55144 -18.36930 -17.05967 -16.01933 -15.68131 -15.51171 -15.18129 -14.62561 -14.18938 -13.96118 -13.79908 -13.51220 -13.24899 -13.10189 -12.82223 -12.46101 -12.31679 -12.21205 -12.13326 -11.99379 -11.82645 -11.36806 -11.11491 -10.99854 -10.72684 -10.39717 -10.10407 -9.65724 -9.51057 -9.33755 -9.03198 -8.83272 -8.06635 -7.76393 -7.74999 -7.29878 -4.86612 1.09480 1.51806 2.47342 2.65234 3.59271 3.62701 3.97827 4.01451 4.25570 4.41709 4.57843 4.61861 4.73726 4.89830 4.98575 5.07206 5.15083 5.45252 5.46275 5.52241 5.53119 5.61990 5.65113 5.68534 5.73109 5.95048 5.97338 5.99637 6.04151 6.23737 6.35317 6.39364 6.47064 6.55257 6.72656 6.89779 6.94651 7.03695 7.17905 7.20134 7.33130 7.39695 7.58985 7.99227 8.20138 8.55226 9.39395 9.94184 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.036021 B = 0.003563 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.145108 B = 7856.437673 C = 8432.990963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.155 3.845 3 C -0.134 4.134 4 N -0.836 5.836 5 C -0.124 4.124 6 C -0.124 4.124 7 C -0.105 4.105 8 C -0.025 4.025 9 C 0.012 3.988 10 C -0.305 4.305 11 C 0.153 3.847 12 N -0.574 5.574 13 C 0.249 3.751 14 C -0.471 4.471 15 H 0.081 0.919 16 C 0.043 3.957 17 N -0.802 5.802 18 Si 1.156 2.844 19 H -0.332 1.332 20 H -0.279 1.279 21 H -0.293 1.293 22 C -0.241 4.241 23 C -0.107 4.107 24 C -0.114 4.114 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.340 0.660 32 H 0.342 0.658 33 H 0.115 0.885 34 H 0.125 0.875 35 H 0.106 0.894 36 H 0.130 0.870 37 H 0.283 0.717 38 H 0.108 0.892 39 H 0.126 0.874 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.857 6.663 -17.805 19.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.062 3.938 3 C -0.191 4.191 4 N -0.366 5.366 5 C -0.126 4.126 6 C -0.143 4.143 7 C -0.124 4.124 8 C -0.026 4.026 9 C 0.006 3.994 10 C -0.328 4.328 11 C -0.008 4.008 12 N -0.293 5.293 13 C 0.127 3.873 14 C -0.503 4.503 15 H 0.100 0.900 16 C -0.179 4.179 17 N -0.423 5.423 18 Si 0.991 3.009 19 H -0.266 1.266 20 H -0.206 1.206 21 H -0.221 1.221 22 C -0.263 4.263 23 C -0.125 4.125 24 C -0.132 4.132 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.154 0.846 32 H 0.155 0.845 33 H 0.133 0.867 34 H 0.143 0.857 35 H 0.124 0.876 36 H 0.147 0.853 37 H 0.094 0.906 38 H 0.126 0.874 39 H 0.144 0.856 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.002 6.123 -16.520 17.618 hybrid contribution -1.231 0.589 -0.970 1.674 sum -1.229 6.712 -17.490 18.774 Atomic orbital electron populations 1.21886 0.93398 1.02229 1.02171 1.19678 0.95141 0.93692 0.85318 1.21803 1.01103 0.94164 1.02058 1.59070 1.13976 1.23773 1.39799 1.20695 0.95598 0.99778 0.96559 1.20773 0.95970 0.99291 0.98247 1.21229 0.99851 0.99149 0.92131 1.19039 0.93987 0.96314 0.93220 1.18702 0.94256 0.94934 0.91494 1.21169 0.99892 1.11914 0.99819 1.22046 0.96693 0.93533 0.88541 1.66516 1.09817 1.25754 1.27206 1.18593 0.88379 0.87439 0.92936 1.20807 1.02030 1.33838 0.93615 0.90049 1.27865 1.07732 0.91601 0.90659 1.70656 1.12608 1.30267 1.28785 0.81799 0.70266 0.78076 0.70797 1.26601 1.20646 1.22139 1.21746 1.01928 1.08757 0.93877 1.21371 0.95784 0.96901 0.98484 1.20978 0.99804 0.99987 0.92443 0.91749 0.91733 0.92521 0.92696 0.91728 0.92049 0.84592 0.84498 0.86728 0.85668 0.87593 0.85291 0.90571 0.87416 0.85579 0.85971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.04 37.16 0.30 -0.95 16 2 C 0.15 1.50 1.08 -132.75 -0.14 1.35 16 3 C -0.13 -1.23 8.75 37.15 0.33 -0.91 16 4 N -0.84 -7.34 8.57 -0.19 0.00 -7.34 16 5 C -0.12 -1.49 4.82 -104.56 -0.50 -1.99 16 6 C -0.12 -1.54 9.27 -39.63 -0.37 -1.91 16 7 C -0.11 -1.57 9.45 -39.25 -0.37 -1.94 16 8 C -0.03 -0.45 5.88 -104.89 -0.62 -1.06 16 9 C 0.01 0.24 5.91 -104.65 -0.62 -0.37 16 10 C -0.30 -6.14 9.52 -38.81 -0.37 -6.51 16 11 C 0.15 3.31 11.17 -17.60 -0.20 3.12 16 12 N -0.57 -14.49 4.54 -11.20 -0.05 -14.54 16 13 C 0.25 6.46 6.39 -85.02 -0.54 5.91 16 14 C -0.47 -12.78 9.58 -37.70 -0.36 -13.14 16 15 H 0.08 2.19 8.05 -52.49 -0.42 1.76 16 16 C 0.04 1.16 5.52 -17.34 -0.10 1.07 16 17 N -0.80 -21.79 13.65 55.55 0.76 -21.03 16 18 Si 1.16 28.39 25.56 -169.99 -4.34 24.04 16 19 H -0.33 -8.06 7.11 56.52 0.40 -7.66 16 20 H -0.28 -6.80 6.67 56.52 0.38 -6.43 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 C -0.24 -5.57 9.22 -38.34 -0.35 -5.93 16 23 C -0.11 -1.70 9.45 -39.25 -0.37 -2.07 16 24 C -0.11 -1.49 9.13 -39.63 -0.36 -1.86 16 25 H 0.06 0.54 6.50 -51.93 -0.34 0.20 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.34 2.72 7.18 -39.29 -0.28 2.44 16 32 H 0.34 2.87 8.98 -39.29 -0.35 2.52 16 33 H 0.11 1.13 6.36 -52.49 -0.33 0.79 16 34 H 0.13 1.73 6.29 -52.49 -0.33 1.40 16 35 H 0.11 1.81 6.32 -52.49 -0.33 1.47 16 36 H 0.13 2.36 8.06 -52.49 -0.42 1.93 16 37 H 0.28 7.33 8.72 -40.82 -0.36 6.97 16 38 H 0.11 2.33 6.33 -52.48 -0.33 1.99 16 39 H 0.13 1.99 6.29 -52.49 -0.33 1.66 16 40 H 0.12 1.35 6.15 -52.49 -0.32 1.02 16 LS Contribution 322.30 15.07 4.86 4.86 Total: -1.00 -28.82 322.30 -8.52 -37.34 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -5.09 Total: 3.86 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: -4.65 Total: -27.19 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.71 Total: -42.92 kcal Atomic # 14 Polarization: 28.39 SS G_CDS: -4.34 Total: 24.04 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.82 -8.52 -37.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245909749.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.208 kcal (2) G-P(sol) polarization free energy of solvation -28.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds