Wall clock time and date at job start Tue Mar 31 2020 05:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47394 * 2 1 4 4 N 1.46903 * 109.47297 * 239.99591 * 2 1 3 5 5 C 1.50703 * 109.47002 * 120.00030 * 2 1 3 6 6 C 1.38324 * 119.87876 * 149.99812 * 5 2 1 7 7 C 1.38017 * 120.12139 * 179.97438 * 6 5 2 8 8 C 1.39346 * 119.87624 * 359.97438 * 7 6 5 9 9 C 1.48387 * 120.11904 * 179.97438 * 8 7 6 10 10 C 1.40036 * 120.82256 * 0.02562 * 9 8 7 11 11 C 1.38511 * 119.42214 * 180.02562 * 10 9 8 12 12 N 1.31478 * 121.14587 * 0.03008 * 11 10 9 13 13 C 1.33647 * 121.79298 * 359.96742 * 12 11 10 14 14 C 1.41426 * 119.77696 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99912 * 187.07025 * 14 13 12 16 16 C 1.40033 * 119.99947 * 7.07167 * 14 13 12 17 17 N 1.30741 * 120.00144 * 182.56910 * 16 14 13 18 18 Si 1.86809 * 120.00169 * 2.56807 * 16 14 13 19 19 H 1.48499 * 109.47093 * 179.97438 * 18 16 14 20 20 H 1.48495 * 109.46992 * 300.00230 * 18 16 14 21 21 H 1.48506 * 109.46797 * 59.99784 * 18 16 14 22 22 C 1.39306 * 120.81975 * 180.27908 * 9 8 7 23 23 C 1.39349 * 119.75667 * 0.25241 * 8 7 6 24 24 C 1.38014 * 119.87446 * 359.51636 * 23 8 7 25 25 H 1.08999 * 109.47521 * 300.00144 * 1 2 3 26 26 H 1.09002 * 109.46758 * 60.00397 * 1 2 3 27 27 H 1.08998 * 109.47033 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47229 * 179.97438 * 3 2 1 29 29 H 1.09007 * 109.47325 * 300.00093 * 3 2 1 30 30 H 1.09004 * 109.47329 * 59.99611 * 3 2 1 31 31 H 1.00899 * 110.99957 * 179.97438 * 4 2 1 32 32 H 1.00901 * 111.00078 * 303.95788 * 4 2 1 33 33 H 1.07992 * 119.93769 * 359.97438 * 6 5 2 34 34 H 1.07996 * 120.05989 * 180.02562 * 7 6 5 35 35 H 1.07993 * 120.28840 * 0.04246 * 10 9 8 36 36 H 1.07996 * 119.42543 * 179.97438 * 11 10 9 37 37 H 0.96999 * 119.99741 * 354.84870 * 17 16 14 38 38 H 1.08005 * 120.58400 * 359.97438 * 22 9 8 39 39 H 1.08000 * 120.05454 * 179.73814 * 23 8 7 40 40 H 1.08000 * 119.93510 * 180.23226 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0323 -0.7104 1.2305 6 6 3.2413 -1.3815 1.1934 7 6 3.7063 -2.0334 2.3176 8 6 2.9558 -2.0142 3.4915 9 6 3.4504 -2.7137 4.7030 10 6 4.6711 -3.3995 4.6875 11 6 5.1048 -4.0430 5.8349 12 7 4.3899 -4.0214 6.9381 13 6 3.2185 -3.3815 7.0056 14 6 2.4843 -3.3863 8.2144 15 1 1.4881 -2.9702 8.2427 16 6 3.0490 -3.9306 9.3744 17 7 2.3519 -3.9807 10.4794 18 14 4.7984 -4.5851 9.3433 19 1 5.1570 -5.1031 10.6881 20 1 4.8990 -5.6815 8.3469 21 1 5.7299 -3.4903 8.9704 22 6 2.7092 -2.7087 5.8826 23 6 1.7363 -1.3405 3.5217 24 6 1.2832 -0.6880 2.3931 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.0284 -0.7057 -1.2229 32 1 1.6442 -1.6274 -1.2558 33 1 3.8223 -1.3955 0.2833 34 1 4.6506 -2.5567 2.2877 35 1 5.2694 -3.4264 3.7888 36 1 6.0461 -4.5723 5.8228 37 1 1.4720 -3.5741 10.5165 38 1 1.7611 -2.1940 5.9337 39 1 1.1487 -1.3260 4.4277 40 1 0.3400 -0.1624 2.4165 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245909749.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:01 Heat of formation + Delta-G solvation = 14.437260 kcal Electronic energy + Delta-G solvation = -20919.539522 eV Core-core repulsion = 17889.807278 eV Total energy + Delta-G solvation = -3029.732243 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.16044 -40.22045 -37.63151 -35.79431 -33.80053 -32.66557 -32.06581 -30.46653 -29.73289 -28.23139 -27.49497 -25.04553 -24.02405 -22.64626 -22.22567 -20.61196 -20.12448 -18.31190 -17.17679 -16.98869 -16.86781 -16.45841 -15.81113 -15.78246 -15.21762 -15.00413 -14.81878 -14.72774 -14.45446 -14.30634 -14.00210 -13.93684 -13.27077 -13.15475 -12.92863 -12.79622 -12.60990 -12.48817 -12.15443 -12.02741 -11.91071 -11.66597 -11.52701 -11.33740 -10.94522 -9.95553 -9.92566 -9.76622 -9.68254 -9.27530 -9.11914 -6.86845 -0.21779 0.42281 0.64693 1.10713 1.60200 1.72039 2.05834 2.46951 2.58159 2.88449 3.49231 3.57492 3.65459 3.78152 3.80908 3.93068 4.01210 4.12573 4.21107 4.37939 4.44611 4.52040 4.57169 4.74176 4.81007 4.86830 4.91151 4.94039 4.98633 5.10363 5.13459 5.23927 5.30730 5.32248 5.35079 5.38182 5.46169 5.54129 5.68142 5.90090 5.98833 6.00530 6.23100 6.32710 6.56973 6.61480 7.53954 7.92771 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.036021 B = 0.003563 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.145108 B = 7856.437673 C = 8432.990963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.157 3.843 3 C -0.134 4.134 4 N -0.834 5.834 5 C -0.109 4.109 6 C -0.120 4.120 7 C -0.103 4.103 8 C -0.064 4.064 9 C 0.019 3.981 10 C -0.282 4.282 11 C 0.134 3.866 12 N -0.596 5.596 13 C 0.237 3.763 14 C -0.514 4.514 15 H 0.062 0.938 16 C 0.015 3.985 17 N -0.831 5.831 18 Si 1.191 2.809 19 H -0.331 1.331 20 H -0.277 1.277 21 H -0.295 1.295 22 C -0.267 4.267 23 C -0.119 4.119 24 C -0.116 4.116 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.347 0.653 32 H 0.346 0.654 33 H 0.147 0.853 34 H 0.139 0.861 35 H 0.148 0.852 36 H 0.168 0.832 37 H 0.280 0.720 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.629 7.352 -22.099 23.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.064 3.936 3 C -0.191 4.191 4 N -0.365 5.365 5 C -0.111 4.111 6 C -0.138 4.138 7 C -0.121 4.121 8 C -0.064 4.064 9 C 0.013 3.987 10 C -0.304 4.304 11 C -0.025 4.025 12 N -0.316 5.316 13 C 0.113 3.887 14 C -0.546 4.546 15 H 0.080 0.920 16 C -0.201 4.201 17 N -0.454 5.454 18 Si 1.023 2.977 19 H -0.265 1.265 20 H -0.204 1.204 21 H -0.223 1.223 22 C -0.289 4.289 23 C -0.138 4.138 24 C -0.134 4.134 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.162 0.838 32 H 0.160 0.840 33 H 0.165 0.835 34 H 0.157 0.843 35 H 0.166 0.834 36 H 0.185 0.815 37 H 0.090 0.910 38 H 0.126 0.874 39 H 0.131 0.869 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.494 6.809 -20.839 21.974 hybrid contribution -1.665 0.506 -0.105 1.743 sum -0.171 7.316 -20.944 22.186 Atomic orbital electron populations 1.21904 0.92805 1.02264 1.02819 1.19721 0.95622 0.93819 0.84417 1.21807 1.01138 0.93674 1.02498 1.59062 1.14550 1.24082 1.38788 1.21111 0.94940 0.98159 0.96876 1.21107 0.96113 0.98001 0.98628 1.21403 0.99962 0.99077 0.91654 1.18975 0.95636 0.98695 0.93058 1.19123 0.93892 0.93793 0.91909 1.21719 0.99241 1.08820 1.00652 1.22778 0.97756 0.93869 0.88080 1.66448 1.09853 1.26126 1.29156 1.18704 0.88911 0.87805 0.93238 1.20753 1.02085 1.36819 0.94972 0.91968 1.28595 1.09420 0.91572 0.90526 1.70675 1.12978 1.32577 1.29212 0.81334 0.68069 0.77593 0.70656 1.26451 1.20403 1.22349 1.21816 1.02830 1.09725 0.94506 1.21418 0.95608 0.97577 0.99161 1.21207 1.00750 0.99517 0.91931 0.91338 0.90966 0.92805 0.92650 0.90862 0.92157 0.83845 0.84050 0.83506 0.84283 0.83444 0.81492 0.90978 0.87413 0.86885 0.84032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.04 71.98 0.58 -1.47 16 2 C 0.16 2.45 1.08 2.78 0.00 2.45 16 3 C -0.13 -1.97 8.75 71.98 0.63 -1.34 16 4 N -0.83 -11.14 8.57 -154.52 -1.32 -12.47 16 5 C -0.11 -2.21 4.82 -19.82 -0.10 -2.30 16 6 C -0.12 -2.46 9.27 22.24 0.21 -2.25 16 7 C -0.10 -2.67 9.45 22.48 0.21 -2.46 16 8 C -0.06 -2.10 5.88 -20.04 -0.12 -2.22 16 9 C 0.02 0.77 5.91 -19.88 -0.12 0.65 16 10 C -0.28 -10.51 9.52 22.77 0.22 -10.29 16 11 C 0.13 5.50 11.17 84.81 0.95 6.45 16 12 N -0.60 -29.98 4.54 -189.36 -0.86 -30.84 16 13 C 0.24 12.68 6.39 40.20 0.26 12.94 16 14 C -0.51 -29.56 9.58 23.49 0.23 -29.33 16 15 H 0.06 3.65 8.05 -2.91 -0.02 3.62 16 16 C 0.01 0.85 5.52 85.29 0.47 1.32 16 17 N -0.83 -47.56 13.65 21.84 0.30 -47.27 16 18 Si 1.19 58.94 25.56 68.60 1.75 60.70 16 19 H -0.33 -16.00 7.11 99.48 0.71 -15.29 16 20 H -0.28 -13.36 6.67 99.48 0.66 -12.70 16 21 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 22 C -0.27 -12.68 9.22 23.07 0.21 -12.46 16 23 C -0.12 -3.68 9.45 22.48 0.21 -3.47 16 24 C -0.12 -2.77 9.13 22.24 0.20 -2.57 16 25 H 0.07 0.94 6.50 -2.39 -0.02 0.92 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.35 3.90 7.18 -89.69 -0.64 3.26 16 32 H 0.35 4.39 8.98 -89.69 -0.81 3.59 16 33 H 0.15 2.07 6.36 -2.91 -0.02 2.05 16 34 H 0.14 3.14 6.29 -2.91 -0.02 3.12 16 35 H 0.15 4.24 6.32 -2.91 -0.02 4.23 16 36 H 0.17 5.47 8.06 -2.91 -0.02 5.44 16 37 H 0.28 15.49 8.72 -92.71 -0.81 14.69 16 38 H 0.11 4.94 6.33 -2.91 -0.02 4.93 16 39 H 0.11 3.69 6.29 -2.91 -0.02 3.67 16 40 H 0.14 2.78 6.15 -2.91 -0.02 2.76 16 Total: -1.00 -64.79 322.30 3.46 -61.32 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -0.45 Total: 14.92 kcal Atomic # 6 Polarization: -50.41 SS G_CDS: 4.04 Total: -46.36 kcal Atomic # 7 Polarization: -88.69 SS G_CDS: -1.88 Total: -90.57 kcal Atomic # 14 Polarization: 58.94 SS G_CDS: 1.75 Total: 60.70 kcal Total: -64.79 3.46 -61.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245909749.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.761 kcal (2) G-P(sol) polarization free energy of solvation -64.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds