Wall clock time and date at job start Tue Mar 31 2020 05:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47655 * 2 1 4 4 N 1.46905 * 109.47092 * 239.99694 * 2 1 3 5 5 C 1.50702 * 109.47160 * 120.00083 * 2 1 3 6 6 C 1.38406 * 119.84802 * 149.99907 * 5 2 1 7 7 C 1.37922 * 120.15006 * 180.02562 * 6 5 2 8 8 C 1.39669 * 119.84416 * 359.97354 * 7 6 5 9 9 C 1.47854 * 120.14787 * 180.02562 * 8 7 6 10 10 C 1.39308 * 120.77928 * 309.99800 * 9 8 7 11 11 N 1.31672 * 120.66055 * 179.69936 * 10 9 8 12 12 C 1.32216 * 122.50377 * 0.03105 * 11 10 9 13 13 C 1.36492 * 121.50325 * 0.02562 * 12 11 10 14 14 C 1.41113 * 119.10552 * 359.93357 * 13 12 11 15 15 C 1.40936 * 121.10621 * 180.02562 * 14 13 12 16 16 H 1.07991 * 120.00372 * 154.62824 * 15 14 13 17 17 C 1.40184 * 119.99739 * 334.63152 * 15 14 13 18 18 N 1.30677 * 120.00317 * 344.31382 * 17 15 14 19 19 Si 1.86797 * 119.99838 * 164.31992 * 17 15 14 20 20 H 1.48506 * 109.47209 * 59.99946 * 19 17 15 21 21 H 1.48508 * 109.46941 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47435 * 299.99570 * 19 17 15 23 23 C 1.39669 * 119.70378 * 0.27887 * 8 7 6 24 24 C 1.37926 * 119.84116 * 359.46646 * 23 8 7 25 25 H 1.08998 * 109.46991 * 300.00333 * 1 2 3 26 26 H 1.08996 * 109.46996 * 59.99718 * 1 2 3 27 27 H 1.08993 * 109.47522 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47303 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47013 * 300.00045 * 3 2 1 30 30 H 1.08998 * 109.47193 * 59.99791 * 3 2 1 31 31 H 1.00896 * 111.00005 * 179.97438 * 4 2 1 32 32 H 1.00899 * 110.99870 * 303.95683 * 4 2 1 33 33 H 1.07998 * 119.92627 * 359.97438 * 6 5 2 34 34 H 1.07995 * 120.07579 * 179.97438 * 7 6 5 35 35 H 1.07997 * 119.67001 * 359.73531 * 10 9 8 36 36 H 1.07997 * 119.24678 * 179.97438 * 12 11 10 37 37 H 1.07999 * 120.44216 * 179.97438 * 13 12 11 38 38 H 0.97001 * 120.00315 * 179.97438 * 18 17 15 39 39 H 1.07997 * 120.07950 * 179.72366 * 23 8 7 40 40 H 1.08004 * 119.91814 * 180.22801 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0323 -0.7104 1.2305 6 6 3.2421 -1.3817 1.1927 7 6 3.7075 -2.0344 2.3150 8 6 2.9552 -2.0164 3.4916 9 6 3.4480 -2.7134 4.6988 10 6 3.8815 -4.0356 4.6316 11 7 4.3255 -4.6522 5.7070 12 6 4.3840 -4.0643 6.8898 13 6 3.9826 -2.7715 7.0643 14 6 3.4959 -2.0481 5.9548 15 6 3.0708 -0.7109 6.0870 16 1 3.0930 -0.0503 5.2330 17 6 2.6193 -0.2384 7.3271 18 7 2.3002 -1.0833 8.2716 19 14 2.4734 1.5991 7.6296 20 1 1.5216 2.1876 6.6533 21 1 1.9765 1.8358 9.0089 22 1 3.8056 2.2349 7.4670 23 6 1.7328 -1.3415 3.5212 24 6 1.2818 -0.6886 2.3930 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 3.0283 -0.7057 -1.2230 32 1 1.6441 -1.6274 -1.2558 33 1 3.8226 -1.3951 0.2820 34 1 4.6515 -2.5582 2.2840 35 1 3.8537 -4.5600 3.6879 36 1 4.7571 -4.6200 7.7373 37 1 4.0374 -2.3083 8.0384 38 1 1.9881 -0.7564 9.1298 39 1 1.1440 -1.3275 4.4264 40 1 0.3384 -0.1632 2.4156 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245909821.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:55 Heat of formation + Delta-G solvation = 35.479098 kcal Electronic energy + Delta-G solvation = -21516.544341 eV Core-core repulsion = 18487.724540 eV Total energy + Delta-G solvation = -3028.819801 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.52793 -38.31915 -36.09552 -34.27888 -31.65214 -30.94342 -30.13984 -29.23368 -27.89826 -27.24122 -26.03818 -23.05557 -22.09369 -21.19773 -20.62159 -19.12784 -17.72194 -16.60319 -15.76080 -15.64690 -14.96562 -14.85596 -14.55137 -14.34042 -13.78204 -13.67166 -13.06072 -12.88536 -12.74726 -12.62096 -12.32865 -12.03222 -11.80275 -11.72709 -11.68518 -11.51925 -11.34896 -11.15900 -10.99227 -10.77822 -10.41172 -10.32764 -9.85173 -9.55119 -8.80981 -8.49669 -8.34838 -8.07215 -7.91567 -7.36388 -6.96488 -4.70474 1.74220 2.01079 2.67766 2.78712 2.93456 2.96286 3.16525 3.74286 4.34840 4.51972 4.54672 4.93341 5.06299 5.20611 5.39783 5.46248 5.58165 5.69562 5.74231 5.83272 5.88029 5.89808 5.93246 6.07712 6.13058 6.24104 6.24945 6.31500 6.60334 6.62957 6.75446 6.80359 6.94935 6.99347 7.00223 7.24908 7.27590 7.31404 7.44478 7.47604 7.59915 7.77684 7.98539 8.32614 8.58098 8.62226 9.53087 9.90135 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.015247 B = 0.005851 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.019949 B = 4784.026936 C = 6220.599699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.157 3.843 3 C -0.132 4.132 4 N -0.837 5.837 5 C -0.140 4.140 6 C -0.125 4.125 7 C -0.127 4.127 8 C 0.025 3.975 9 C -0.237 4.237 10 C 0.129 3.871 11 N -0.578 5.578 12 C 0.081 3.919 13 C -0.208 4.208 14 C 0.146 3.854 15 C -0.441 4.441 16 H 0.086 0.914 17 C 0.078 3.922 18 N -0.778 5.778 19 Si 0.909 3.091 20 H -0.261 1.261 21 H -0.276 1.276 22 H -0.261 1.261 23 C -0.096 4.096 24 C -0.117 4.117 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.339 0.661 32 H 0.340 0.660 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.126 0.874 38 H 0.286 0.714 39 H 0.127 0.873 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.261 4.218 -9.713 10.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.064 3.936 3 C -0.190 4.190 4 N -0.367 5.367 5 C -0.142 4.142 6 C -0.143 4.143 7 C -0.145 4.145 8 C 0.024 3.976 9 C -0.243 4.243 10 C -0.029 4.029 11 N -0.293 5.293 12 C -0.066 4.066 13 C -0.230 4.230 14 C 0.138 3.862 15 C -0.471 4.471 16 H 0.104 0.896 17 C -0.143 4.143 18 N -0.402 5.402 19 Si 0.733 3.267 20 H -0.186 1.186 21 H -0.200 1.200 22 H -0.185 1.185 23 C -0.114 4.114 24 C -0.136 4.136 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.125 0.875 34 H 0.132 0.868 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.143 0.857 38 H 0.098 0.902 39 H 0.145 0.855 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.438 3.897 -9.896 10.911 hybrid contribution 0.108 0.985 1.191 1.549 sum -2.329 4.881 -8.704 10.248 Atomic orbital electron populations 1.21863 0.93742 1.02023 1.01864 1.19611 0.94847 0.93533 0.85615 1.21791 1.01028 0.94465 1.01737 1.59099 1.13895 1.23595 1.40118 1.20505 0.96122 1.01220 0.96377 1.20628 0.95937 0.99808 0.97952 1.21224 0.99603 1.00816 0.92852 1.18712 0.92564 0.94222 0.92075 1.19564 1.15101 0.95583 0.94038 1.22076 0.94165 0.91045 0.95638 1.67318 1.23283 1.39291 0.99383 1.21731 0.97803 0.93155 0.93931 1.21910 1.04731 0.95652 1.00725 1.17726 0.86429 0.92617 0.89439 1.19584 1.36051 0.95734 0.95693 0.89573 1.26029 0.92520 1.00532 0.95223 1.69726 1.28663 1.37026 1.04806 0.86324 0.80120 0.81888 0.78381 1.18564 1.20043 1.18536 1.21441 0.95811 0.96437 0.97742 1.20934 0.99612 1.00356 0.92698 0.91817 0.92121 0.92651 0.92810 0.92133 0.92106 0.84727 0.84701 0.87521 0.86815 0.86206 0.86406 0.85662 0.90249 0.85525 0.86726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.03 37.16 0.30 -1.26 16 2 C 0.16 1.92 1.08 -132.75 -0.14 1.78 16 3 C -0.13 -1.57 8.75 37.16 0.33 -1.24 16 4 N -0.84 -9.22 8.57 -0.19 0.00 -9.22 16 5 C -0.14 -2.10 4.83 -104.50 -0.50 -2.60 16 6 C -0.12 -1.92 9.27 -39.64 -0.37 -2.29 16 7 C -0.13 -2.28 9.55 -39.16 -0.37 -2.65 16 8 C 0.03 0.52 4.99 -104.89 -0.52 0.00 16 9 C -0.24 -5.56 5.54 -104.04 -0.58 -6.14 16 10 C 0.13 2.96 10.71 -17.22 -0.18 2.78 16 11 N -0.58 -13.93 10.32 -13.36 -0.14 -14.07 16 12 C 0.08 1.93 11.09 -18.02 -0.20 1.73 16 13 C -0.21 -5.20 8.72 -39.12 -0.34 -5.54 16 14 C 0.15 3.68 5.59 -106.26 -0.59 3.08 16 15 C -0.44 -10.81 7.33 -37.83 -0.28 -11.09 16 16 H 0.09 2.09 6.70 -52.49 -0.35 1.74 16 17 C 0.08 1.82 5.21 -17.31 -0.09 1.73 16 18 N -0.78 -18.65 10.95 55.56 0.61 -18.04 16 19 Si 0.91 17.57 29.59 -169.99 -5.03 12.54 16 20 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 21 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16 22 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 23 C -0.10 -1.89 8.08 -39.16 -0.32 -2.21 16 24 C -0.12 -1.95 9.12 -39.64 -0.36 -2.31 16 25 H 0.06 0.70 6.49 -51.93 -0.34 0.37 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.34 3.50 7.18 -39.29 -0.28 3.22 16 32 H 0.34 3.58 8.98 -39.29 -0.35 3.22 16 33 H 0.11 1.36 6.35 -52.49 -0.33 1.03 16 34 H 0.11 1.95 8.05 -52.49 -0.42 1.52 16 35 H 0.12 2.44 8.05 -52.49 -0.42 2.02 16 36 H 0.12 2.47 8.06 -52.49 -0.42 2.04 16 37 H 0.13 3.16 6.27 -52.49 -0.33 2.83 16 38 H 0.29 6.24 8.29 -40.82 -0.34 5.91 16 39 H 0.13 2.68 7.40 -52.49 -0.39 2.29 16 40 H 0.11 1.68 6.15 -52.48 -0.32 1.35 16 LS Contribution 327.32 15.07 4.93 4.93 Total: -1.00 -26.33 327.32 -9.07 -35.41 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -5.21 Total: 14.69 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: -4.23 Total: -26.23 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.47 Total: -41.33 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.54 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -26.33 -9.07 -35.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245909821.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.884 kcal (2) G-P(sol) polarization free energy of solvation -26.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds