Wall clock time and date at job start Tue Mar 31 2020 05:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47655 * 2 1 4 4 N 1.46905 * 109.47092 * 239.99694 * 2 1 3 5 5 C 1.50702 * 109.47160 * 120.00083 * 2 1 3 6 6 C 1.38406 * 119.84802 * 149.99907 * 5 2 1 7 7 C 1.37922 * 120.15006 * 180.02562 * 6 5 2 8 8 C 1.39669 * 119.84416 * 359.97354 * 7 6 5 9 9 C 1.47854 * 120.14787 * 180.02562 * 8 7 6 10 10 C 1.39308 * 120.77928 * 309.99800 * 9 8 7 11 11 N 1.31672 * 120.66055 * 179.69936 * 10 9 8 12 12 C 1.32216 * 122.50377 * 0.03105 * 11 10 9 13 13 C 1.36492 * 121.50325 * 0.02562 * 12 11 10 14 14 C 1.41113 * 119.10552 * 359.93357 * 13 12 11 15 15 C 1.40936 * 121.10621 * 180.02562 * 14 13 12 16 16 H 1.07991 * 120.00372 * 154.62824 * 15 14 13 17 17 C 1.40184 * 119.99739 * 334.63152 * 15 14 13 18 18 N 1.30677 * 120.00317 * 344.31382 * 17 15 14 19 19 Si 1.86797 * 119.99838 * 164.31992 * 17 15 14 20 20 H 1.48506 * 109.47209 * 59.99946 * 19 17 15 21 21 H 1.48508 * 109.46941 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47435 * 299.99570 * 19 17 15 23 23 C 1.39669 * 119.70378 * 0.27887 * 8 7 6 24 24 C 1.37926 * 119.84116 * 359.46646 * 23 8 7 25 25 H 1.08998 * 109.46991 * 300.00333 * 1 2 3 26 26 H 1.08996 * 109.46996 * 59.99718 * 1 2 3 27 27 H 1.08993 * 109.47522 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47303 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47013 * 300.00045 * 3 2 1 30 30 H 1.08998 * 109.47193 * 59.99791 * 3 2 1 31 31 H 1.00896 * 111.00005 * 179.97438 * 4 2 1 32 32 H 1.00899 * 110.99870 * 303.95683 * 4 2 1 33 33 H 1.07998 * 119.92627 * 359.97438 * 6 5 2 34 34 H 1.07995 * 120.07579 * 179.97438 * 7 6 5 35 35 H 1.07997 * 119.67001 * 359.73531 * 10 9 8 36 36 H 1.07997 * 119.24678 * 179.97438 * 12 11 10 37 37 H 1.07999 * 120.44216 * 179.97438 * 13 12 11 38 38 H 0.97001 * 120.00315 * 179.97438 * 18 17 15 39 39 H 1.07997 * 120.07950 * 179.72366 * 23 8 7 40 40 H 1.08004 * 119.91814 * 180.22801 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0323 -0.7104 1.2305 6 6 3.2421 -1.3817 1.1927 7 6 3.7075 -2.0344 2.3150 8 6 2.9552 -2.0164 3.4916 9 6 3.4480 -2.7134 4.6988 10 6 3.8815 -4.0356 4.6316 11 7 4.3255 -4.6522 5.7070 12 6 4.3840 -4.0643 6.8898 13 6 3.9826 -2.7715 7.0643 14 6 3.4959 -2.0481 5.9548 15 6 3.0708 -0.7109 6.0870 16 1 3.0930 -0.0503 5.2330 17 6 2.6193 -0.2384 7.3271 18 7 2.3002 -1.0833 8.2716 19 14 2.4734 1.5991 7.6296 20 1 1.5216 2.1876 6.6533 21 1 1.9765 1.8358 9.0089 22 1 3.8056 2.2349 7.4670 23 6 1.7328 -1.3415 3.5212 24 6 1.2818 -0.6886 2.3930 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 3.0283 -0.7057 -1.2230 32 1 1.6441 -1.6274 -1.2558 33 1 3.8226 -1.3951 0.2820 34 1 4.6515 -2.5582 2.2840 35 1 3.8537 -4.5600 3.6879 36 1 4.7571 -4.6200 7.7373 37 1 4.0374 -2.3083 8.0384 38 1 1.9881 -0.7564 9.1298 39 1 1.1440 -1.3275 4.4264 40 1 0.3384 -0.1632 2.4156 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245909821.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:55 Heat of formation + Delta-G solvation = 21.631514 kcal Electronic energy + Delta-G solvation = -21517.144817 eV Core-core repulsion = 18487.724540 eV Total energy + Delta-G solvation = -3029.420277 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.91857 -39.94671 -37.33194 -36.07619 -33.25637 -32.31691 -31.82506 -30.29138 -29.43100 -28.17251 -27.81509 -24.56169 -23.70651 -22.76168 -22.15452 -20.30655 -19.53447 -17.90048 -17.46072 -16.68357 -16.48139 -16.27662 -16.19659 -15.76650 -15.13349 -14.92407 -14.54129 -14.38410 -14.30640 -14.09137 -13.83015 -13.35353 -13.20257 -13.01445 -12.94200 -12.84543 -12.73906 -12.61431 -12.13501 -12.03279 -11.96631 -11.62934 -11.53357 -11.28927 -10.17650 -9.97982 -9.76116 -9.71384 -9.66035 -9.00313 -8.70399 -6.56193 0.24737 0.62754 0.94553 1.05335 1.34239 1.44990 1.52588 2.12400 2.70946 2.95663 3.60840 3.66979 3.84169 3.94666 4.02649 4.15727 4.24255 4.27050 4.33484 4.49163 4.64507 4.73553 4.86266 4.92460 4.95870 4.98506 5.01355 5.04861 5.15292 5.21506 5.29485 5.31666 5.35382 5.39514 5.50428 5.64583 5.69309 5.83608 6.00361 6.15959 6.22195 6.29519 6.48177 6.62370 6.74082 6.77660 7.67157 8.16417 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.015247 B = 0.005851 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.019949 B = 4784.026936 C = 6220.599699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.160 3.840 3 C -0.132 4.132 4 N -0.832 5.832 5 C -0.126 4.126 6 C -0.118 4.118 7 C -0.129 4.129 8 C -0.007 4.007 9 C -0.240 4.240 10 C 0.117 3.883 11 N -0.591 5.591 12 C 0.076 3.924 13 C -0.230 4.230 14 C 0.116 3.884 15 C -0.458 4.458 16 H 0.081 0.919 17 C 0.042 3.958 18 N -0.806 5.806 19 Si 0.976 3.024 20 H -0.256 1.256 21 H -0.264 1.264 22 H -0.261 1.261 23 C -0.112 4.112 24 C -0.117 4.117 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.345 0.655 32 H 0.345 0.655 33 H 0.140 0.860 34 H 0.119 0.881 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.116 0.884 38 H 0.294 0.706 39 H 0.099 0.901 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.640 5.666 -11.958 13.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.067 3.933 3 C -0.190 4.190 4 N -0.363 5.363 5 C -0.128 4.128 6 C -0.136 4.136 7 C -0.148 4.148 8 C -0.008 4.008 9 C -0.245 4.245 10 C -0.040 4.040 11 N -0.305 5.305 12 C -0.072 4.072 13 C -0.253 4.253 14 C 0.108 3.892 15 C -0.487 4.487 16 H 0.099 0.901 17 C -0.177 4.177 18 N -0.431 5.431 19 Si 0.796 3.204 20 H -0.180 1.180 21 H -0.188 1.188 22 H -0.185 1.185 23 C -0.130 4.130 24 C -0.135 4.135 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.159 0.841 32 H 0.159 0.841 33 H 0.158 0.842 34 H 0.137 0.863 35 H 0.161 0.839 36 H 0.159 0.841 37 H 0.133 0.867 38 H 0.106 0.894 39 H 0.117 0.883 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.816 5.324 -12.165 13.574 hybrid contribution 0.192 0.514 1.758 1.842 sum -2.625 5.838 -10.407 12.218 Atomic orbital electron populations 1.21867 0.92877 1.02180 1.02560 1.19653 0.95536 0.93617 0.84522 1.21791 1.00949 0.93990 1.02256 1.59092 1.14402 1.23955 1.38820 1.20928 0.95309 0.99696 0.96829 1.20950 0.96119 0.98318 0.98186 1.21325 0.99626 1.01153 0.92667 1.18694 0.93806 0.96091 0.92180 1.19905 1.13979 0.95877 0.94724 1.22470 0.93967 0.91226 0.96290 1.67373 1.23912 1.39528 0.99711 1.22056 0.97440 0.93004 0.94696 1.21911 1.06367 0.96490 1.00499 1.18130 0.87152 0.93448 0.90479 1.19677 1.36984 0.95689 0.96396 0.90087 1.26807 0.91628 1.04752 0.94481 1.69766 1.28919 1.38996 1.05390 0.85327 0.80009 0.76287 0.78783 1.18021 1.18775 1.18511 1.21282 0.95800 0.97926 0.98003 1.21133 1.00516 0.99700 0.92195 0.91691 0.90931 0.92798 0.92962 0.90796 0.92488 0.84070 0.84145 0.84232 0.86270 0.83867 0.84135 0.86656 0.89449 0.88255 0.84837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 8.03 71.98 0.58 -2.10 16 2 C 0.16 3.39 1.08 2.78 0.00 3.39 16 3 C -0.13 -2.69 8.75 71.98 0.63 -2.06 16 4 N -0.83 -15.18 8.57 -154.52 -1.32 -16.51 16 5 C -0.13 -3.44 4.83 -19.79 -0.10 -3.53 16 6 C -0.12 -3.31 9.27 22.23 0.21 -3.10 16 7 C -0.13 -4.52 9.55 22.54 0.22 -4.30 16 8 C -0.01 -0.29 4.99 -20.04 -0.10 -0.39 16 9 C -0.24 -11.57 5.54 -19.49 -0.11 -11.68 16 10 C 0.12 5.47 10.71 84.97 0.91 6.38 16 11 N -0.59 -28.85 10.32 -196.19 -2.02 -30.87 16 12 C 0.08 3.71 11.09 84.23 0.93 4.64 16 13 C -0.23 -11.99 8.72 22.57 0.20 -11.79 16 14 C 0.12 6.08 5.59 -20.93 -0.12 5.96 16 15 C -0.46 -23.26 7.33 23.40 0.17 -23.09 16 16 H 0.08 4.08 6.70 -2.92 -0.02 4.06 16 17 C 0.04 1.99 5.21 85.34 0.44 2.43 16 18 N -0.81 -39.70 10.95 21.87 0.24 -39.46 16 19 Si 0.98 36.08 29.59 68.60 2.03 38.11 16 20 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 21 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 22 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 23 C -0.11 -4.47 8.08 22.54 0.18 -4.28 16 24 C -0.12 -3.74 9.12 22.23 0.20 -3.54 16 25 H 0.06 1.25 6.49 -2.39 -0.02 1.23 16 26 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 27 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.34 5.71 7.18 -89.70 -0.64 5.07 16 32 H 0.35 5.98 8.98 -89.69 -0.81 5.18 16 33 H 0.14 3.00 6.35 -2.91 -0.02 2.98 16 34 H 0.12 3.95 8.05 -2.91 -0.02 3.93 16 35 H 0.14 5.81 8.05 -2.91 -0.02 5.79 16 36 H 0.14 5.97 8.06 -2.91 -0.02 5.95 16 37 H 0.12 6.10 6.27 -2.91 -0.02 6.09 16 38 H 0.29 13.05 8.29 -92.71 -0.77 12.29 16 39 H 0.10 4.43 7.40 -2.91 -0.02 4.41 16 40 H 0.13 3.68 6.15 -2.91 -0.02 3.66 16 Total: -1.00 -57.90 327.32 2.80 -55.11 By element: Atomic # 1 Polarization: 41.05 SS G_CDS: -0.38 Total: 40.67 kcal Atomic # 6 Polarization: -51.31 SS G_CDS: 4.25 Total: -47.05 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -3.11 Total: -86.84 kcal Atomic # 14 Polarization: 36.08 SS G_CDS: 2.03 Total: 38.11 kcal Total: -57.90 2.80 -55.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245909821.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.737 kcal (2) G-P(sol) polarization free energy of solvation -57.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds