Wall clock time and date at job start Tue Mar 31 2020 05:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47030 * 2 1 4 4 N 1.46897 * 109.46828 * 240.00267 * 2 1 3 5 5 C 1.50697 * 109.46894 * 120.00025 * 2 1 3 6 6 C 1.38408 * 119.84184 * 150.00324 * 5 2 1 7 7 C 1.37914 * 120.15074 * 180.02562 * 6 5 2 8 8 C 1.39680 * 119.84770 * 359.97438 * 7 6 5 9 9 C 1.47819 * 120.15604 * 180.02562 * 8 7 6 10 10 C 1.39684 * 120.64682 * 309.97477 * 9 8 7 11 11 C 1.38394 * 118.47319 * 180.02562 * 10 9 8 12 12 C 1.39054 * 119.72705 * 359.97438 * 11 10 9 13 13 N 1.31284 * 121.33873 * 0.02577 * 12 11 10 14 14 C 1.33693 * 121.63692 * 359.97438 * 13 12 11 15 15 C 1.40820 * 119.94040 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00273 * 179.97438 * 15 14 13 17 17 C 1.40151 * 119.99825 * 0.02562 * 15 14 13 18 18 N 1.30698 * 120.00211 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00193 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47035 * 60.00007 * 19 17 15 21 21 H 1.48502 * 109.47344 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47438 * 300.00205 * 19 17 15 23 23 C 1.39688 * 119.69584 * 0.27426 * 8 7 6 24 24 C 1.37919 * 119.84323 * 359.47227 * 23 8 7 25 25 H 1.09002 * 109.46834 * 300.00080 * 1 2 3 26 26 H 1.09000 * 109.46995 * 59.99589 * 1 2 3 27 27 H 1.08999 * 109.47197 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47089 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47567 * 300.00061 * 3 2 1 30 30 H 1.09002 * 109.47377 * 60.00252 * 3 2 1 31 31 H 1.00901 * 111.00264 * 59.99996 * 4 2 1 32 32 H 1.00904 * 110.99569 * 183.95178 * 4 2 1 33 33 H 1.07994 * 119.92817 * 359.96919 * 6 5 2 34 34 H 1.08001 * 120.07498 * 179.97438 * 7 6 5 35 35 H 1.07995 * 120.76107 * 0.04170 * 10 9 8 36 36 H 1.07996 * 120.13647 * 180.02562 * 11 10 9 37 37 H 1.08007 * 119.33144 * 180.29683 * 12 11 10 38 38 H 0.96997 * 120.00557 * 179.97438 * 18 17 15 39 39 H 1.08004 * 120.08032 * 179.72985 * 23 8 7 40 40 H 1.08004 * 119.92444 * 180.23319 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0323 -0.7104 1.2304 6 6 3.2422 -1.3816 1.1926 7 6 3.7077 -2.0343 2.3148 8 6 2.9554 -2.0165 3.4915 9 6 3.4481 -2.7134 4.6985 10 6 3.8817 -4.0393 4.6280 11 6 4.3336 -4.6482 5.7857 12 6 4.3466 -3.9355 6.9797 13 7 3.9369 -2.6895 7.0356 14 6 3.4898 -2.0489 5.9506 15 6 3.0584 -0.7122 6.0515 16 1 2.6974 -0.1937 5.1757 17 6 3.0985 -0.0545 7.2884 18 7 3.5358 -0.6818 8.3484 19 14 2.5269 1.7189 7.4223 20 1 1.1027 1.8122 7.0124 21 1 2.6685 2.1800 8.8268 22 1 3.3546 2.5741 6.5342 23 6 1.7328 -1.3415 3.5211 24 6 1.2818 -0.6886 2.3931 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6961 -0.2349 -2.0386 32 1 3.0262 -0.7625 -1.1909 33 1 3.8226 -1.3950 0.2820 34 1 4.6517 -2.5581 2.2837 35 1 3.8650 -4.5769 3.6914 36 1 4.6754 -5.6723 5.7618 37 1 4.7050 -4.4154 7.8784 38 1 3.5640 -0.2265 9.2044 39 1 1.1439 -1.3275 4.4264 40 1 0.3385 -0.1631 2.4156 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245909825.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:25 Heat of formation + Delta-G solvation = 50.077642 kcal Electronic energy + Delta-G solvation = -21510.677624 eV Core-core repulsion = 18482.490864 eV Total energy + Delta-G solvation = -3028.186760 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.43637 -38.13185 -36.13080 -33.73001 -31.70333 -30.81895 -30.29227 -29.12096 -27.95886 -27.24236 -25.73464 -23.14481 -21.97513 -21.10932 -20.59715 -19.12383 -17.54275 -16.84812 -15.71585 -15.29380 -14.94394 -14.45314 -14.38573 -14.25282 -13.94333 -13.41878 -13.19319 -12.91887 -12.84737 -12.43432 -12.19701 -12.14912 -11.81933 -11.68002 -11.63770 -11.29290 -11.20943 -11.11741 -10.91247 -10.65237 -10.30379 -10.21265 -9.83932 -9.44385 -8.79208 -8.48015 -8.23463 -7.97503 -7.62990 -7.24273 -6.48985 -4.56997 1.85083 2.10624 2.73645 3.01331 3.03210 3.05747 3.18831 3.87915 4.37691 4.60461 4.68571 4.80993 5.07176 5.17888 5.50782 5.54061 5.57654 5.70336 5.79343 5.82377 5.87111 5.92737 6.05584 6.07781 6.15153 6.22423 6.24058 6.38105 6.50512 6.67386 6.71387 6.83885 6.94399 7.04981 7.11838 7.26467 7.30254 7.36204 7.43428 7.53990 7.70852 7.78130 7.99895 8.18745 8.56922 8.86339 10.02971 10.21478 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.015555 B = 0.005843 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.616062 B = 4790.824615 C = 6234.829406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.158 3.842 3 C -0.176 4.176 4 N -0.837 5.837 5 C -0.099 4.099 6 C -0.109 4.109 7 C -0.130 4.130 8 C 0.027 3.973 9 C -0.237 4.237 10 C -0.033 4.033 11 C -0.321 4.321 12 C 0.132 3.868 13 N -0.483 5.483 14 C 0.268 3.732 15 C -0.421 4.421 16 H 0.094 0.906 17 C 0.068 3.932 18 N -0.708 5.708 19 Si 0.904 3.096 20 H -0.262 1.262 21 H -0.276 1.276 22 H -0.263 1.263 23 C -0.107 4.107 24 C -0.119 4.119 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.336 0.664 32 H 0.340 0.660 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.118 0.882 38 H 0.275 0.725 39 H 0.126 0.874 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.123 3.332 -11.803 12.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.065 3.935 3 C -0.235 4.235 4 N -0.368 5.368 5 C -0.100 4.100 6 C -0.127 4.127 7 C -0.148 4.148 8 C 0.026 3.974 9 C -0.242 4.242 10 C -0.058 4.058 11 C -0.345 4.345 12 C -0.037 4.037 13 N -0.194 5.194 14 C 0.145 3.855 15 C -0.450 4.450 16 H 0.112 0.888 17 C -0.158 4.158 18 N -0.329 5.329 19 Si 0.727 3.273 20 H -0.187 1.187 21 H -0.201 1.201 22 H -0.188 1.188 23 C -0.125 4.125 24 C -0.137 4.137 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.148 0.852 32 H 0.154 0.846 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.136 0.864 38 H 0.086 0.914 39 H 0.144 0.856 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.504 3.239 -10.506 11.539 hybrid contribution 0.416 1.103 -0.869 1.464 sum -3.088 4.342 -11.375 12.561 Atomic orbital electron populations 1.21866 0.93684 1.02602 1.01275 1.19531 0.94911 0.90314 0.88714 1.22621 1.01461 0.97340 1.02057 1.58982 1.16376 1.57883 1.03541 1.19406 0.95763 1.00922 0.93883 1.20580 0.95899 0.98814 0.97404 1.21212 0.99666 1.01084 0.92861 1.18721 0.92414 0.94160 0.92109 1.19394 1.15377 0.95416 0.94029 1.20894 0.94732 0.93553 0.96573 1.21221 1.17383 1.00699 0.95158 1.22606 0.93927 0.91796 0.95354 1.68766 1.14231 1.07073 1.29373 1.18517 0.88577 0.93019 0.85392 1.19795 1.34636 0.95355 0.95244 0.88822 1.26152 0.94072 0.99988 0.95617 1.70106 1.26859 1.36218 0.99686 0.86434 0.80428 0.82118 0.78297 1.18657 1.20081 1.18772 1.21377 0.95991 0.97417 0.97755 1.20860 0.99485 1.00652 0.92718 0.91810 0.93126 0.91637 0.92605 0.92938 0.91726 0.85173 0.84550 0.87361 0.86965 0.88560 0.88719 0.86402 0.91376 0.85568 0.86778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.07 37.16 0.30 -1.26 16 2 C 0.16 1.95 1.09 -132.75 -0.14 1.80 16 3 C -0.18 -1.97 8.74 37.16 0.32 -1.65 16 4 N -0.84 -9.21 8.63 -0.19 0.00 -9.21 16 5 C -0.10 -1.56 4.84 -104.50 -0.51 -2.07 16 6 C -0.11 -1.78 9.26 -39.64 -0.37 -2.14 16 7 C -0.13 -2.46 9.55 -39.16 -0.37 -2.83 16 8 C 0.03 0.57 5.02 -104.90 -0.53 0.05 16 9 C -0.24 -5.73 5.53 -104.07 -0.58 -6.30 16 10 C -0.03 -0.75 9.67 -38.98 -0.38 -1.13 16 11 C -0.32 -7.18 10.10 -39.22 -0.40 -7.57 16 12 C 0.13 3.17 11.17 -17.48 -0.20 2.97 16 13 N -0.48 -13.17 7.85 -10.91 -0.09 -13.26 16 14 C 0.27 7.18 6.56 -84.71 -0.56 6.63 16 15 C -0.42 -10.92 7.97 -37.89 -0.30 -11.23 16 16 H 0.09 2.31 5.25 -52.49 -0.28 2.04 16 17 C 0.07 1.70 5.50 -17.32 -0.10 1.61 16 18 N -0.71 -18.48 11.46 55.56 0.64 -17.85 16 19 Si 0.90 18.34 29.56 -169.99 -5.02 13.32 16 20 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 21 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 22 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 23 C -0.11 -2.15 7.57 -39.16 -0.30 -2.44 16 24 C -0.12 -2.02 9.12 -39.64 -0.36 -2.38 16 25 H 0.06 0.70 6.49 -51.93 -0.34 0.37 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.34 2.97 9.00 -39.29 -0.35 2.61 16 32 H 0.34 3.53 7.00 -39.29 -0.28 3.25 16 33 H 0.11 1.49 6.26 -52.49 -0.33 1.17 16 34 H 0.11 2.03 8.05 -52.49 -0.42 1.60 16 35 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 36 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 37 H 0.12 2.51 8.06 -52.48 -0.42 2.09 16 38 H 0.27 6.51 8.29 -40.82 -0.34 6.17 16 39 H 0.13 2.63 7.26 -52.48 -0.38 2.25 16 40 H 0.11 1.68 6.15 -52.48 -0.32 1.36 16 LS Contribution 327.22 15.07 4.93 4.93 Total: -1.00 -28.67 327.22 -9.21 -37.87 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -5.21 Total: 12.15 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: -4.45 Total: -27.95 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.55 Total: -40.32 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.02 Total: 13.32 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.67 -9.21 -37.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245909825.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.949 kcal (2) G-P(sol) polarization free energy of solvation -28.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds