Wall clock time and date at job start Tue Mar 31 2020 05:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47100 * 2 1 4 4 N 1.46900 * 109.47612 * 239.99975 * 2 1 3 5 5 C 1.50703 * 109.47091 * 119.99727 * 2 1 3 6 6 C 1.38400 * 119.85430 * 150.00097 * 5 2 1 7 7 C 1.37927 * 120.14489 * 179.97438 * 6 5 2 8 8 C 1.39619 * 119.85514 * 0.02562 * 7 6 5 9 9 C 1.47971 * 120.14765 * 179.97438 * 8 7 6 10 10 C 1.40259 * 120.34932 * 180.20321 * 9 8 7 11 11 C 1.36682 * 118.60683 * 180.26880 * 10 9 8 12 12 C 1.40879 * 119.25231 * 359.75881 * 11 10 9 13 13 C 1.40986 * 119.67981 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99986 * 353.67772 * 13 12 11 15 15 C 1.40111 * 120.00160 * 173.67979 * 13 12 11 16 16 N 1.30710 * 119.99458 * 6.30350 * 15 13 12 17 17 Si 1.86799 * 120.00265 * 186.30108 * 15 13 12 18 18 H 1.48497 * 109.46900 * 94.98295 * 17 15 13 19 19 H 1.48496 * 109.47233 * 214.98549 * 17 15 13 20 20 H 1.48505 * 109.46788 * 334.98411 * 17 15 13 21 21 N 1.33781 * 120.63661 * 0.02562 * 12 11 10 22 22 C 1.31193 * 121.50585 * 359.97438 * 21 12 11 23 23 C 1.39619 * 119.71007 * 0.25352 * 8 7 6 24 24 C 1.37940 * 119.84938 * 359.46932 * 23 8 7 25 25 H 1.08994 * 109.47467 * 300.00078 * 1 2 3 26 26 H 1.09000 * 109.46762 * 60.00233 * 1 2 3 27 27 H 1.09000 * 109.46951 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47412 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47123 * 299.99546 * 3 2 1 30 30 H 1.08999 * 109.47460 * 59.99826 * 3 2 1 31 31 H 1.00900 * 110.99927 * 59.99915 * 4 2 1 32 32 H 1.00903 * 111.00204 * 183.95562 * 4 2 1 33 33 H 1.07996 * 119.92382 * 0.02621 * 6 5 2 34 34 H 1.08005 * 120.06921 * 180.02562 * 7 6 5 35 35 H 1.07999 * 120.69810 * 0.03229 * 10 9 8 36 36 H 1.07996 * 120.37337 * 179.77294 * 11 10 9 37 37 H 0.97006 * 119.99578 * 180.02562 * 16 15 13 38 38 H 1.08000 * 119.64935 * 179.97438 * 22 21 12 39 39 H 1.07999 * 120.07553 * 179.74604 * 23 8 7 40 40 H 1.07995 * 119.92683 * 180.25855 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6925 -1.1994 5 6 2.0323 -0.7104 1.2305 6 6 3.2421 -1.3816 1.1929 7 6 3.7078 -2.0333 2.3158 8 6 2.9557 -2.0153 3.4919 9 6 3.4489 -2.7128 4.7002 10 6 2.6947 -2.7010 5.8827 11 6 3.1867 -3.3521 6.9792 12 6 4.4261 -4.0155 6.8872 13 6 4.9423 -4.6895 8.0128 14 1 4.4409 -4.6110 8.9662 15 6 6.1058 -5.4612 7.8947 16 7 6.7811 -5.4582 6.7755 17 14 6.6919 -6.4942 9.3364 18 1 6.1820 -7.8813 9.1911 19 1 8.1766 -6.5126 9.3611 20 1 6.1830 -5.9099 10.6033 21 7 5.1184 -4.0112 5.7425 22 6 4.6721 -3.3951 4.6737 23 6 1.7334 -1.3412 3.5214 24 6 1.2818 -0.6886 2.3931 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6963 -0.2350 -2.0385 32 1 3.0263 -0.7626 -1.1908 33 1 3.8230 -1.3944 0.2826 34 1 4.6522 -2.5565 2.2852 35 1 1.7471 -2.1849 5.9272 36 1 2.6315 -3.3581 7.9054 37 1 7.5864 -5.9927 6.6935 38 1 5.2560 -3.4105 3.7652 39 1 1.1448 -1.3269 4.4268 40 1 0.3385 -0.1633 2.4158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245914178.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:29 Heat of formation + Delta-G solvation = 47.432513 kcal Electronic energy + Delta-G solvation = -20748.585377 eV Core-core repulsion = 17720.283915 eV Total energy + Delta-G solvation = -3028.301462 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.52020 -38.22537 -36.29674 -33.82543 -31.50604 -31.16411 -30.37313 -29.27246 -28.37976 -27.33233 -25.56624 -22.96763 -22.65100 -20.82967 -20.73088 -19.24177 -17.63803 -17.02924 -15.74586 -15.44307 -15.09036 -14.77144 -14.46995 -14.08075 -13.73687 -13.44971 -13.22607 -13.06904 -12.88920 -12.59387 -12.44593 -12.21787 -11.99588 -11.82386 -11.70480 -11.36737 -11.23872 -11.18553 -10.97174 -10.73530 -10.33567 -10.24351 -9.99878 -9.61521 -8.88850 -8.66465 -8.42379 -8.24411 -7.67973 -7.14576 -6.59386 -4.62827 1.60086 1.95786 2.74999 2.99285 3.01732 3.02895 3.15767 3.80559 4.27196 4.49321 4.71567 4.73825 4.98826 5.09175 5.35673 5.41183 5.47935 5.61263 5.67628 5.73542 5.77197 5.81378 5.94045 5.97556 6.00996 6.09197 6.14968 6.24567 6.48264 6.56109 6.67943 6.72591 6.90154 6.94467 6.98965 7.09396 7.19391 7.28125 7.37271 7.46486 7.62725 7.75961 7.90114 8.06398 8.46113 8.75507 9.95473 10.11562 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.045717 B = 0.003131 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.319108 B = 8941.975666 C = 9367.848643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.159 3.841 3 C -0.175 4.175 4 N -0.837 5.837 5 C -0.115 4.115 6 C -0.094 4.094 7 C -0.146 4.146 8 C 0.033 3.967 9 C -0.277 4.277 10 C -0.036 4.036 11 C -0.272 4.272 12 C 0.252 3.748 13 C -0.409 4.409 14 H 0.088 0.912 15 C 0.063 3.937 16 N -0.700 5.700 17 Si 0.912 3.088 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.259 1.259 21 N -0.489 5.489 22 C 0.157 3.843 23 C -0.148 4.148 24 C -0.104 4.104 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.336 0.664 32 H 0.341 0.659 33 H 0.110 0.890 34 H 0.119 0.881 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.277 0.723 38 H 0.123 0.877 39 H 0.115 0.885 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.223 8.168 -9.739 14.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.067 3.933 3 C -0.234 4.234 4 N -0.368 5.368 5 C -0.116 4.116 6 C -0.113 4.113 7 C -0.164 4.164 8 C 0.032 3.968 9 C -0.283 4.283 10 C -0.059 4.059 11 C -0.294 4.294 12 C 0.129 3.871 13 C -0.439 4.439 14 H 0.106 0.894 15 C -0.164 4.164 16 N -0.319 5.319 17 Si 0.736 3.264 18 H -0.192 1.192 19 H -0.199 1.199 20 H -0.183 1.183 21 N -0.201 5.201 22 C -0.013 4.013 23 C -0.166 4.166 24 C -0.123 4.123 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.149 0.851 32 H 0.155 0.845 33 H 0.128 0.872 34 H 0.137 0.863 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.088 0.912 38 H 0.140 0.860 39 H 0.133 0.867 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.628 6.974 -9.509 13.067 hybrid contribution -0.069 0.913 0.385 0.993 sum -5.697 7.887 -9.124 13.338 Atomic orbital electron populations 1.21863 0.93758 1.02608 1.01192 1.19505 0.94840 0.90228 0.88748 1.22624 1.01447 0.97405 1.01963 1.58968 1.16427 1.57884 1.03534 1.19361 0.96097 1.02130 0.94002 1.20627 0.95588 0.97671 0.97375 1.21141 1.00562 1.02028 0.92691 1.18868 0.92432 0.92856 0.92673 1.19070 1.01187 1.13992 0.94012 1.20660 0.96912 0.95765 0.92560 1.21437 1.00340 1.09116 0.98547 1.18675 0.87968 0.89016 0.91469 1.19795 1.06351 1.21879 0.95830 0.89388 1.26204 0.96197 0.96977 0.97049 1.70124 1.10615 1.27042 1.24163 0.86229 0.78531 0.80261 0.81425 1.19223 1.19862 1.18299 1.68800 1.32466 1.20320 0.98494 1.22779 0.91148 0.90744 0.96592 1.21108 0.96916 1.00489 0.98112 1.20785 0.99023 0.99783 0.92679 0.91962 0.93092 0.91622 0.92613 0.92910 0.91909 0.85122 0.84493 0.87209 0.86336 0.88332 0.88141 0.91163 0.86002 0.86666 0.86926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.07 37.16 0.30 -1.12 16 2 C 0.16 1.80 1.09 -132.75 -0.14 1.66 16 3 C -0.18 -1.75 8.74 37.16 0.32 -1.42 16 4 N -0.84 -8.68 8.63 -0.19 0.00 -8.68 16 5 C -0.12 -1.67 4.84 -104.50 -0.51 -2.18 16 6 C -0.09 -1.45 9.26 -39.64 -0.37 -1.82 16 7 C -0.15 -2.59 9.44 -39.18 -0.37 -2.96 16 8 C 0.03 0.64 5.88 -104.88 -0.62 0.03 16 9 C -0.28 -6.24 5.92 -104.45 -0.62 -6.86 16 10 C -0.04 -0.80 9.46 -39.38 -0.37 -1.17 16 11 C -0.27 -6.55 9.76 -39.15 -0.38 -6.93 16 12 C 0.25 6.74 6.54 -84.98 -0.56 6.18 16 13 C -0.41 -10.57 9.11 -37.84 -0.34 -10.91 16 14 H 0.09 2.10 7.86 -52.48 -0.41 1.69 16 15 C 0.06 1.55 5.49 -17.33 -0.10 1.45 16 16 N -0.70 -18.01 11.47 55.56 0.64 -17.37 16 17 Si 0.91 17.78 29.57 -169.99 -5.03 12.76 16 18 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 19 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 20 H -0.26 -4.95 7.11 56.52 0.40 -4.54 16 21 N -0.49 -13.29 7.86 -10.84 -0.09 -13.38 16 22 C 0.16 3.79 10.60 -17.13 -0.18 3.60 16 23 C -0.15 -2.58 9.44 -39.18 -0.37 -2.95 16 24 C -0.10 -1.58 9.12 -39.63 -0.36 -1.94 16 25 H 0.06 0.60 6.49 -51.93 -0.34 0.27 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.34 2.77 9.00 -39.29 -0.35 2.42 16 32 H 0.34 3.33 7.00 -39.29 -0.28 3.05 16 33 H 0.11 1.43 6.26 -52.49 -0.33 1.10 16 34 H 0.12 2.03 6.22 -52.48 -0.33 1.70 16 35 H 0.10 1.91 6.30 -52.49 -0.33 1.57 16 36 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 37 H 0.28 6.40 8.29 -40.82 -0.34 6.06 16 38 H 0.12 2.66 6.21 -52.49 -0.33 2.33 16 39 H 0.12 1.90 6.25 -52.49 -0.33 1.57 16 40 H 0.11 1.43 6.15 -52.49 -0.32 1.11 16 LS Contribution 326.42 15.07 4.92 4.92 Total: -1.00 -28.59 326.42 -9.23 -37.82 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -5.01 Total: 11.28 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: -4.66 Total: -27.35 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.55 Total: -39.43 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.76 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.59 -9.23 -37.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245914178.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.253 kcal (2) G-P(sol) polarization free energy of solvation -28.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds